Wall clock time and date at job start Sat Apr 11 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47074 * 239.99838 * 2 1 3 5 5 C 1.52998 * 109.47152 * 174.46937 * 4 2 1 6 6 C 1.50699 * 109.47205 * 183.15580 * 5 4 2 7 7 H 1.08008 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00444 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99527 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00224 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47330 * 89.99846 * 10 8 6 12 12 H 1.48500 * 109.46636 * 209.99795 * 10 8 6 13 13 H 1.48503 * 109.47094 * 329.99497 * 10 8 6 14 14 N 1.46898 * 109.46978 * 119.99646 * 2 1 3 15 15 C 1.46891 * 111.00323 * 283.22086 * 14 2 1 16 16 C 1.50703 * 109.47503 * 173.72395 * 15 14 2 17 17 C 1.38338 * 120.44999 * 260.44851 * 16 15 14 18 18 C 1.38843 * 118.50457 * 180.26106 * 17 16 15 19 19 C 1.38067 * 119.32667 * 359.47132 * 18 17 16 20 20 N 1.31942 * 120.85409 * 0.28307 * 19 18 17 21 21 C 1.32422 * 121.62165 * 359.97438 * 20 19 18 22 22 N 1.39010 * 119.70189 * 179.97438 * 21 20 19 23 23 C 1.46506 * 119.99915 * 88.67392 * 22 21 20 24 24 S 1.65592 * 120.00125 * 268.67577 * 22 21 20 25 25 C 1.81394 * 104.45191 * 90.00134 * 24 22 21 26 26 O 1.42106 * 104.27943 * 206.07121 * 24 22 21 27 27 O 1.42096 * 104.27827 * 333.92771 * 24 22 21 28 28 H 1.09003 * 109.47051 * 60.00049 * 1 2 3 29 29 H 1.08990 * 109.47284 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46952 * 300.00370 * 1 2 3 31 31 H 1.09000 * 109.46850 * 294.47180 * 4 2 1 32 32 H 1.09004 * 109.47100 * 54.46802 * 4 2 1 33 33 H 1.09001 * 109.46831 * 303.14804 * 5 4 2 34 34 H 1.08999 * 109.47381 * 63.15470 * 5 4 2 35 35 H 0.96998 * 119.99502 * 180.02562 * 9 8 6 36 36 H 1.00898 * 111.00185 * 47.18084 * 14 2 1 37 37 H 1.08995 * 109.47492 * 53.72095 * 15 14 2 38 38 H 1.09007 * 109.47086 * 293.72303 * 15 14 2 39 39 H 1.07996 * 120.75189 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.33416 * 179.75628 * 18 17 16 41 41 H 1.08000 * 119.57265 * 180.25608 * 19 18 17 42 42 H 1.09002 * 109.46983 * 95.09676 * 23 22 21 43 43 H 1.08996 * 109.47017 * 215.09592 * 23 22 21 44 44 H 1.08998 * 109.46862 * 335.09685 * 23 22 21 45 45 H 1.08997 * 109.47200 * 59.99929 * 25 24 22 46 46 H 1.08998 * 109.47309 * 180.02562 * 25 24 22 47 47 H 1.09009 * 109.46881 * 299.99959 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5636 -0.6020 -1.3207 6 6 4.0588 -1.2452 -2.5904 7 1 3.3570 -1.6945 -3.2775 8 6 5.4079 -1.2610 -2.8745 9 7 6.2626 -0.7143 -2.0376 10 14 6.0216 -2.0576 -4.4488 11 1 6.0578 -1.0450 -5.5344 12 1 7.3875 -2.5979 -4.2301 13 1 5.1076 -3.1631 -4.8331 14 7 2.0196 -0.6924 1.1995 15 6 1.8994 0.1633 2.3873 16 6 2.2643 -0.6289 3.6163 17 6 1.2771 -1.1659 4.4230 18 6 1.6588 -1.8840 5.5483 19 6 3.0020 -2.0495 5.8215 20 7 3.9222 -1.5302 5.0312 21 6 3.5984 -0.8348 3.9518 22 7 4.6007 -0.3050 3.1475 23 6 5.1591 -1.1021 2.0524 24 16 5.1635 1.2270 3.4270 25 6 6.5338 1.0001 4.5937 26 8 5.6507 1.6575 2.1633 27 8 4.0764 1.8902 4.0575 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7597 -1.7735 -1.2010 32 1 1.5980 -0.2679 -2.1365 33 1 3.8464 0.4506 -1.3125 34 1 4.0081 -1.1045 -0.4616 35 1 7.2116 -0.7251 -2.2377 36 1 1.5365 -1.5679 1.3341 37 1 0.8731 0.5195 2.4762 38 1 2.5726 1.0152 2.2910 39 1 0.2329 -1.0257 4.1854 40 1 0.9125 -2.3127 6.2008 41 1 3.3033 -2.6109 6.6935 42 1 4.6447 -0.8546 1.1238 43 1 6.2218 -0.8829 1.9487 44 1 5.0263 -2.1619 2.2701 45 1 7.2942 0.3634 4.1416 46 1 6.9686 1.9696 4.8366 47 1 6.1615 0.5308 5.5045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:34 Heat of formation + Delta-G solvation = -50.468459 kcal Electronic energy + Delta-G solvation = -29468.190601 eV Core-core repulsion = 25584.533731 eV Total energy + Delta-G solvation = -3883.656870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.45328 -38.60265 -38.26752 -37.19143 -36.88281 -35.48581 -34.28975 -32.50302 -31.33902 -30.40303 -30.08764 -27.33560 -27.01469 -26.16004 -24.03282 -23.23923 -22.61564 -21.40050 -20.41938 -19.10662 -18.31628 -18.09851 -17.79688 -17.12892 -16.81833 -16.51006 -16.47546 -16.28965 -15.59296 -15.00446 -14.82353 -14.64451 -14.50740 -14.43061 -14.13814 -14.06259 -13.93298 -13.88349 -13.79063 -13.57064 -13.32641 -13.26249 -13.15126 -13.01358 -12.88084 -12.79810 -12.70186 -12.31208 -12.19720 -12.08150 -11.78691 -11.48306 -11.21752 -10.90689 -10.83841 -10.72210 -10.39162 -9.96320 -9.81113 -9.12614 -8.03571 -6.14107 -0.87238 0.08398 0.32743 1.42439 1.42838 1.43554 1.53985 2.48477 2.68203 2.81628 3.03578 3.27007 3.36546 3.48126 3.79660 3.90271 3.96958 4.06750 4.09046 4.11017 4.13457 4.34098 4.38654 4.47983 4.51896 4.61088 4.69395 4.77526 4.80751 4.87281 4.91609 5.00283 5.04558 5.12949 5.19987 5.25664 5.30477 5.34173 5.48597 5.53304 5.69265 5.95142 5.99726 6.16777 6.23093 6.42681 6.63234 6.97340 7.05137 7.52467 9.06086 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.004310 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.061449 B = 6494.520214 C = 7708.962074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.049 0.951 4 C -0.087 4.087 5 C 0.034 3.966 6 C -0.542 4.542 7 H 0.052 0.948 8 C 0.005 3.995 9 N -0.921 5.921 10 Si 0.954 3.046 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.265 1.265 14 N -0.674 5.674 15 C 0.109 3.891 16 C -0.123 4.123 17 C -0.065 4.065 18 C -0.153 4.153 19 C 0.102 3.898 20 N -0.511 5.511 21 C 0.344 3.656 22 N -0.935 5.935 23 C 0.110 3.890 24 S 2.591 3.409 25 C -0.645 4.645 26 O -0.983 6.983 27 O -0.979 6.979 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.046 0.954 33 H -0.033 1.033 34 H 0.025 0.975 35 H 0.259 0.741 36 H 0.345 0.655 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.163 0.837 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 -2.448 20.866 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 H 0.067 0.933 4 C -0.125 4.125 5 C -0.002 4.002 6 C -0.581 4.581 7 H 0.070 0.930 8 C -0.194 4.194 9 N -0.561 5.561 10 Si 0.780 3.220 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.190 1.190 14 N -0.305 5.305 15 C -0.020 4.020 16 C -0.129 4.129 17 C -0.092 4.092 18 C -0.173 4.173 19 C -0.057 4.057 20 N -0.223 5.223 21 C 0.116 3.884 22 N -0.768 5.768 23 C -0.034 4.034 24 S 2.689 3.311 25 C -0.799 4.799 26 O -0.973 6.973 27 O -0.970 6.970 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.065 0.935 33 H -0.015 1.015 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.164 0.836 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.181 0.819 40 H 0.197 0.803 41 H 0.210 0.790 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.163 0.837 46 H 0.170 0.830 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.669 -1.569 20.506 21.949 hybrid contribution -0.404 -0.287 -0.913 1.038 sum -8.073 -1.856 19.593 21.272 Atomic orbital electron populations 1.22385 0.95255 1.02717 1.02402 1.21533 0.93494 0.96844 0.90206 0.93278 1.21447 0.96965 0.99073 0.95044 1.18950 0.91925 0.93700 0.95670 1.21747 0.92445 1.36924 1.06938 0.92982 1.25851 0.97413 0.96255 0.99835 1.70152 1.02325 1.45864 1.37759 0.85627 0.77612 0.78822 0.79974 1.20472 1.20843 1.18956 1.60457 1.62354 1.06495 1.01210 1.20654 0.99777 0.94428 0.87170 1.20955 0.93795 1.00205 0.97954 1.21835 1.00194 0.93964 0.93223 1.22580 0.98231 0.98733 0.97727 1.23242 0.89157 0.95623 0.97688 1.67298 1.40876 1.09304 1.04798 1.17641 0.86114 0.95140 0.89476 1.54675 1.48575 1.34067 1.39492 1.21572 0.97800 0.95534 0.88447 1.05439 0.77166 0.72705 0.75789 1.30305 1.18730 1.13583 1.17299 1.93665 1.82922 1.79682 1.41049 1.93535 1.52055 1.72538 1.78837 0.91950 0.91391 0.91831 0.92839 0.93525 1.01467 0.95676 0.93226 0.83596 0.92182 0.93695 0.81921 0.80329 0.79035 0.91344 0.91567 0.90811 0.83660 0.83022 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 9.16 71.98 0.66 -3.59 16 2 C 0.09 3.08 2.56 44.92 0.12 3.19 16 3 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 4 C -0.09 -3.67 4.83 30.59 0.15 -3.53 16 5 C 0.03 1.88 4.83 29.85 0.14 2.03 16 6 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 7 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 8 C 0.00 0.27 5.46 84.65 0.46 0.74 16 9 N -0.92 -57.67 13.29 21.45 0.28 -57.39 16 10 Si 0.95 45.78 29.54 68.60 2.03 47.81 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 N -0.67 -21.89 5.29 -495.60 -2.62 -24.51 16 15 C 0.11 3.29 5.33 85.56 0.46 3.75 16 16 C -0.12 -3.29 5.23 -19.63 -0.10 -3.40 16 17 C -0.07 -1.18 9.81 22.44 0.22 -0.96 16 18 C -0.15 -2.07 10.10 22.37 0.23 -1.84 16 19 C 0.10 1.70 11.17 84.64 0.95 2.65 16 20 N -0.51 -12.74 10.39 -193.26 -2.01 -14.75 16 21 C 0.34 10.10 5.40 133.04 0.72 10.81 16 22 N -0.94 -30.73 2.42 -366.54 -0.89 -31.62 16 23 C 0.11 4.10 10.12 127.77 1.29 5.40 16 24 S 2.59 84.38 5.52 -56.49 -0.31 84.07 16 25 C -0.65 -13.20 10.99 113.37 1.25 -11.95 16 26 O -0.98 -42.20 17.19 -127.65 -2.19 -44.39 16 27 O -0.98 -34.67 16.24 -127.65 -2.07 -36.74 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.38 6.89 -2.39 -0.02 1.37 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H -0.03 -2.07 8.14 -2.39 -0.02 -2.09 16 34 H 0.03 1.43 5.32 -2.39 -0.01 1.41 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.34 9.77 8.51 -89.70 -0.76 9.00 16 37 H 0.06 1.51 6.66 -2.39 -0.02 1.49 16 38 H 0.04 1.67 6.42 -2.38 -0.02 1.66 16 39 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.07 3.14 5.10 -2.39 -0.01 3.12 16 43 H 0.07 2.39 7.97 -2.39 -0.02 2.37 16 44 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 45 H 0.14 2.66 8.14 -2.39 -0.02 2.65 16 46 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.15 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -82.07 393.51 -0.81 -82.88 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.21 Total: 22.99 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 6.76 Total: -28.35 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.23 Total: -128.27 kcal Atomic # 8 Polarization: -76.87 SS G_CDS: -4.27 Total: -81.13 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 84.38 SS G_CDS: -0.31 Total: 84.07 kcal Total: -82.07 -0.81 -82.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.412 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds