Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47486 * 2 1 4 4 C 1.53000 * 109.47115 * 120.00420 * 2 1 3 5 5 C 1.53003 * 109.47203 * 185.00246 * 4 2 1 6 6 C 1.50699 * 109.47055 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00305 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99650 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00068 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99614 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47376 * 89.99992 * 10 8 6 12 12 H 1.48499 * 109.46983 * 209.99936 * 10 8 6 13 13 H 1.48501 * 109.47443 * 329.99776 * 10 8 6 14 14 N 1.46902 * 109.47127 * 239.99731 * 2 1 3 15 15 C 1.46907 * 110.99584 * 84.99940 * 14 2 1 16 16 C 1.50701 * 109.46756 * 174.61145 * 15 14 2 17 17 C 1.38346 * 120.44845 * 260.71778 * 16 15 14 18 18 C 1.38839 * 118.50414 * 179.97438 * 17 16 15 19 19 C 1.38063 * 119.32816 * 0.02562 * 18 17 16 20 20 N 1.31942 * 120.85446 * 359.97438 * 19 18 17 21 21 C 1.32420 * 121.62270 * 0.02562 * 20 19 18 22 22 N 1.39013 * 119.70578 * 180.02562 * 21 20 19 23 23 C 1.46490 * 120.00226 * 85.94057 * 22 21 20 24 24 S 1.65607 * 119.99524 * 265.94523 * 22 21 20 25 25 C 1.81395 * 104.45004 * 89.99963 * 24 22 21 26 26 O 1.42100 * 104.27224 * 206.06813 * 24 22 21 27 27 O 1.42100 * 104.27563 * 333.92280 * 24 22 21 28 28 H 1.08995 * 109.46789 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46777 * 299.99887 * 1 2 3 30 30 H 1.09000 * 109.46813 * 59.99961 * 1 2 3 31 31 H 1.09000 * 109.47114 * 304.99398 * 4 2 1 32 32 H 1.08994 * 109.47565 * 64.99879 * 4 2 1 33 33 H 1.09010 * 109.46784 * 299.99251 * 5 4 2 34 34 H 1.08994 * 109.47159 * 59.99385 * 5 4 2 35 35 H 0.97004 * 119.99891 * 180.02562 * 9 8 6 36 36 H 1.00904 * 111.00274 * 321.05057 * 14 2 1 37 37 H 1.08999 * 109.46754 * 54.61624 * 15 14 2 38 38 H 1.08995 * 109.47513 * 294.60874 * 15 14 2 39 39 H 1.07996 * 120.74829 * 359.96068 * 17 16 15 40 40 H 1.07999 * 120.33663 * 179.97438 * 18 17 16 41 41 H 1.08007 * 119.57272 * 179.72111 * 19 18 17 42 42 H 1.08999 * 109.47452 * 93.64736 * 23 22 21 43 43 H 1.09004 * 109.47433 * 213.64903 * 23 22 21 44 44 H 1.08999 * 109.47467 * 333.64770 * 23 22 21 45 45 H 1.08996 * 109.47356 * 59.99641 * 25 24 22 46 46 H 1.08998 * 109.46889 * 179.97438 * 25 24 22 47 47 H 1.09003 * 109.47055 * 299.99626 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0671 -1.3233 2.5444 7 1 3.3687 -1.8039 3.2135 8 6 5.4185 -1.3602 2.8157 9 7 6.2690 -0.7755 2.0008 10 14 6.0410 -2.2396 4.3417 11 1 6.3203 -3.6609 4.0146 12 1 7.2876 -1.5865 4.8155 13 1 5.0099 -2.1706 5.4082 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2226 -2.3469 16 6 2.7111 -0.4848 -3.5197 17 6 4.0469 -0.2896 -3.8223 18 6 4.5846 -0.9621 -4.9115 19 6 3.7771 -1.7991 -5.6554 20 7 2.5060 -1.9662 -5.3435 21 6 1.9563 -1.3428 -4.3126 22 7 0.6131 -1.5486 -4.0196 23 6 0.2112 -2.6817 -3.1826 24 16 -0.5327 -0.5127 -4.6168 25 6 -1.0050 -1.2321 -6.2136 26 8 -1.6063 -0.6062 -3.6906 27 8 0.1658 0.7100 -4.8077 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -0.2618 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0729 0.4259 34 1 3.8532 0.4369 1.3573 35 1 7.2197 -0.8018 2.1915 36 1 1.4496 -1.4980 -1.4101 37 1 2.6822 1.0940 -2.0842 38 1 1.0747 0.5417 -2.6127 39 1 4.6575 0.3711 -3.2250 40 1 5.6239 -0.8311 -5.1746 41 1 4.1902 -2.3207 -6.5062 42 1 0.1419 -2.3594 -2.1437 43 1 -0.7591 -3.0519 -3.5137 44 1 0.9517 -3.4770 -3.2677 45 1 -1.4044 -2.2341 -6.0568 46 1 -1.7652 -0.6076 -6.6828 47 1 -0.1295 -1.2871 -6.8605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = -52.413362 kcal Electronic energy + Delta-G solvation = -29006.867254 eV Core-core repulsion = 25123.126047 eV Total energy + Delta-G solvation = -3883.741207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.53278 -38.67032 -38.33467 -37.28154 -36.99287 -35.48759 -34.35176 -32.53182 -31.56395 -30.40714 -30.16276 -27.44937 -27.05127 -26.26171 -24.16746 -23.28260 -22.73435 -21.40454 -20.50969 -19.16754 -18.35423 -18.18684 -17.99106 -17.11028 -16.95614 -16.56970 -16.50461 -16.32323 -15.74196 -15.31576 -14.87313 -14.73253 -14.51074 -14.40419 -14.17054 -14.12045 -14.05779 -13.92977 -13.80368 -13.61955 -13.35022 -13.26514 -13.22922 -13.14456 -12.90653 -12.83961 -12.75051 -12.42921 -12.30037 -12.12527 -11.84388 -11.54404 -11.22453 -11.03605 -10.97975 -10.73687 -10.46517 -10.17461 -9.89485 -9.21825 -8.11855 -6.21694 -0.93947 0.02981 0.27858 1.32284 1.40738 1.42222 1.52968 2.44925 2.62764 2.74672 2.97082 3.20320 3.30097 3.41519 3.71168 3.84373 3.97603 3.99935 4.02999 4.07741 4.09991 4.24540 4.33940 4.38686 4.48354 4.51011 4.60105 4.67973 4.73404 4.75291 4.85465 4.87156 4.94246 5.01179 5.06291 5.16233 5.24028 5.27376 5.39617 5.45885 5.60894 5.84722 5.88909 6.03654 6.14463 6.36505 6.51702 6.86599 6.97262 7.45844 8.99388 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.003302 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.634388 B = 8477.424238 C = 9627.794108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.063 0.937 4 C -0.085 4.085 5 C 0.040 3.960 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.265 1.265 14 N -0.679 5.679 15 C 0.107 3.893 16 C -0.113 4.113 17 C -0.069 4.069 18 C -0.155 4.155 19 C 0.105 3.895 20 N -0.495 5.495 21 C 0.335 3.665 22 N -0.945 5.945 23 C 0.088 3.912 24 S 2.594 3.406 25 C -0.643 4.643 26 O -0.972 6.972 27 O -0.982 6.982 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.005 0.995 34 H -0.023 1.023 35 H 0.261 0.739 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.138 0.862 40 H 0.170 0.830 41 H 0.199 0.801 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 -3.159 -21.585 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.003 3.997 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.189 1.189 14 N -0.313 5.313 15 C -0.023 4.023 16 C -0.119 4.119 17 C -0.096 4.096 18 C -0.175 4.175 19 C -0.054 4.054 20 N -0.206 5.206 21 C 0.106 3.894 22 N -0.777 5.777 23 C -0.056 4.056 24 S 2.692 3.308 25 C -0.797 4.797 26 O -0.963 6.963 27 O -0.972 6.972 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.024 0.976 34 H -0.004 1.004 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.156 0.844 40 H 0.187 0.813 41 H 0.215 0.785 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.174 0.826 46 H 0.169 0.831 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.823 -2.843 -21.451 25.152 hybrid contribution 0.366 0.068 0.820 0.900 sum -12.457 -2.775 -20.631 24.259 Atomic orbital electron populations 1.22429 0.95801 1.02647 1.02239 1.21618 0.93044 0.97344 0.90308 0.91880 1.21436 0.96839 0.99006 0.95029 1.18807 0.91834 0.93916 0.95121 1.21792 0.92493 1.34328 1.09367 0.92719 1.25924 0.97396 0.96512 0.99929 1.70115 1.02492 1.45535 1.38972 0.85531 0.77763 0.78625 0.79597 1.19880 1.20837 1.18949 1.60600 1.58352 1.09541 1.02765 1.20703 0.98458 0.94853 0.88251 1.20854 0.95309 0.98898 0.96844 1.21749 0.93502 0.97950 0.96430 1.22562 1.03166 0.96816 0.94949 1.23185 0.87416 0.95396 0.99376 1.67291 1.14801 1.22331 1.16222 1.17482 0.85187 0.94484 0.92229 1.54909 1.13713 1.45174 1.63947 1.21836 1.02598 0.87367 0.93772 1.05439 0.72942 0.74010 0.78396 1.30285 1.13690 1.15661 1.20104 1.93597 1.54819 1.86601 1.61243 1.93590 1.72742 1.43195 1.87695 0.91661 0.90965 0.93260 0.92924 0.93288 0.97632 1.00443 0.93069 0.83745 0.90793 0.94845 0.84428 0.81257 0.78467 0.92796 0.87574 0.89666 0.82626 0.83105 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.16 71.98 0.66 -4.47 16 2 C 0.09 3.13 2.59 44.92 0.12 3.25 16 3 H 0.06 2.40 7.71 -2.39 -0.02 2.39 16 4 C -0.09 -3.65 4.83 30.60 0.15 -3.50 16 5 C 0.04 2.21 4.86 29.85 0.15 2.36 16 6 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 7 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 9 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 10 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 N -0.68 -24.01 5.66 -495.57 -2.81 -26.82 16 15 C 0.11 3.52 5.27 85.56 0.45 3.97 16 16 C -0.11 -3.37 5.21 -19.63 -0.10 -3.47 16 17 C -0.07 -1.88 9.81 22.44 0.22 -1.66 16 18 C -0.16 -3.10 10.10 22.37 0.23 -2.87 16 19 C 0.10 1.93 11.17 84.63 0.95 2.87 16 20 N -0.49 -11.18 10.39 -193.26 -2.01 -13.19 16 21 C 0.33 8.68 5.45 133.04 0.73 9.40 16 22 N -0.94 -21.02 2.45 -366.58 -0.90 -21.92 16 23 C 0.09 1.64 9.44 127.77 1.21 2.84 16 24 S 2.59 55.10 5.44 -56.49 -0.31 54.79 16 25 C -0.64 -6.79 10.99 113.37 1.25 -5.54 16 26 O -0.97 -24.87 17.16 -127.65 -2.19 -27.06 16 27 O -0.98 -28.06 15.81 -127.65 -2.02 -30.08 16 28 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.45 7.56 -2.39 -0.02 1.43 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.01 0.31 7.75 -2.38 -0.02 0.29 16 34 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.34 10.94 5.51 -89.69 -0.49 10.45 16 37 H 0.07 2.53 7.82 -2.39 -0.02 2.51 16 38 H 0.03 1.10 5.42 -2.39 -0.01 1.08 16 39 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 40 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.05 1.14 6.07 -2.39 -0.01 1.12 16 43 H 0.11 1.29 7.92 -2.38 -0.02 1.27 16 44 H 0.08 1.52 8.02 -2.39 -0.02 1.50 16 45 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -79.88 393.65 -0.77 -80.65 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.47 Total: 21.88 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 6.68 Total: -28.05 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -5.43 Total: -119.59 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -4.21 Total: -57.14 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.31 Total: 54.79 kcal Total: -79.88 -0.77 -80.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds