Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00252 * 2 1 4 4 C 1.50691 * 109.47384 * 179.97438 * 3 2 1 5 5 N 1.28656 * 124.72160 * 89.99625 * 4 3 2 6 6 C 1.33560 * 115.76426 * 180.02562 * 5 4 3 7 7 C 1.47271 * 123.13591 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99390 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00157 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 C 1.53005 * 109.46867 * 294.99527 * 13 10 9 15 15 C 1.53008 * 109.46774 * 180.02562 * 14 13 10 16 16 C 1.53005 * 109.46774 * 180.02562 * 15 14 13 17 17 N 1.46492 * 109.46855 * 179.97438 * 16 15 14 18 18 C 1.36934 * 120.00299 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99658 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00555 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99515 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47164 * 90.00091 * 22 20 18 24 24 H 1.48500 * 109.46870 * 209.99626 * 22 20 18 25 25 H 1.48497 * 109.47245 * 330.00001 * 22 20 18 26 26 C 1.35201 * 113.72047 * 0.24585 * 6 5 4 27 27 S 1.70771 * 124.72160 * 269.99818 * 4 3 2 28 28 H 1.08997 * 109.46704 * 60.00609 * 1 2 3 29 29 H 1.08994 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47135 * 300.00972 * 1 2 3 31 31 H 1.08997 * 109.47204 * 59.99394 * 3 2 1 32 32 H 1.09000 * 109.46273 * 299.99834 * 3 2 1 33 33 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 36 36 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 37 37 H 1.08990 * 109.47170 * 54.99738 * 13 10 9 38 38 H 1.09001 * 109.46952 * 174.99815 * 13 10 9 39 39 H 1.09000 * 109.47443 * 300.00098 * 14 13 10 40 40 H 1.09001 * 109.47099 * 60.00379 * 14 13 10 41 41 H 1.09000 * 109.47044 * 300.00132 * 15 14 13 42 42 H 1.09001 * 109.47171 * 60.00211 * 15 14 13 43 43 H 1.09001 * 109.46908 * 300.00434 * 16 15 14 44 44 H 1.08996 * 109.46687 * 59.99974 * 16 15 14 45 45 H 0.96999 * 120.00405 * 0.02562 * 17 16 15 46 46 H 0.97006 * 119.99411 * 179.97438 * 21 20 18 47 47 H 1.07997 * 125.59004 * 179.75584 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2435 1.1284 -1.0565 6 6 5.5585 1.0237 -0.8480 7 6 6.5431 0.9449 -1.9404 8 8 7.7284 0.8501 -1.6850 9 7 6.1305 0.9777 -3.2231 10 6 7.1099 0.8987 -4.3097 11 1 7.9280 0.2417 -4.0145 12 6 7.6589 2.2962 -4.6040 13 6 6.4354 0.3411 -5.5647 14 6 5.9969 -1.1024 -5.3093 15 6 5.3228 -1.6602 -6.5645 16 6 4.8838 -3.1035 -6.3089 17 7 4.2379 -3.6374 -7.5105 18 6 3.7594 -4.9204 -7.5180 19 1 3.8586 -5.5388 -6.6381 20 6 3.1479 -5.4266 -8.6567 21 7 3.0275 -4.6731 -9.7291 22 14 2.4958 -7.1770 -8.6670 23 1 1.0836 -7.1819 -8.2081 24 1 2.5703 -7.7248 -10.0452 25 1 3.3153 -8.0159 -7.7559 26 6 5.9010 0.9911 0.4595 27 16 4.4816 1.1100 1.4047 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 5.1852 1.0530 -3.4267 34 1 8.3873 2.2375 -5.4128 35 1 6.8408 2.9532 -4.8993 36 1 8.1395 2.6935 -3.7100 37 1 5.5635 0.9479 -5.8086 38 1 7.1392 0.3652 -6.3966 39 1 6.8688 -1.7093 -5.0653 40 1 5.2930 -1.1265 -4.4773 41 1 4.4510 -1.0534 -6.8089 42 1 6.0270 -1.6362 -7.3962 43 1 5.7554 -3.7105 -6.0642 44 1 4.1795 -3.1270 -5.4773 45 1 4.1491 -3.0821 -8.3008 46 1 2.6004 -5.0269 -10.5250 47 1 6.9067 0.9063 0.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176805352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = -43.865063 kcal Electronic energy + Delta-G solvation = -26473.613664 eV Core-core repulsion = 22590.243139 eV Total energy + Delta-G solvation = -3883.370525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 5.55 seconds Orbital eigenvalues (eV) -40.85528 -39.27318 -38.12984 -36.89769 -35.21454 -33.20645 -32.13161 -31.38767 -30.21150 -28.60681 -27.39639 -26.52787 -25.48021 -24.09543 -22.36366 -21.70278 -20.76543 -20.58237 -20.21252 -19.15926 -17.06163 -17.01624 -16.84287 -16.55029 -16.21002 -15.91140 -15.50706 -14.94202 -14.70878 -14.62397 -14.23131 -14.04891 -13.81674 -13.44150 -13.16353 -13.11320 -12.89552 -12.83752 -12.70390 -12.44018 -12.24569 -11.89204 -11.71125 -11.41154 -11.21442 -10.95775 -10.76839 -10.64654 -10.39075 -10.37429 -10.30855 -10.22276 -10.16817 -10.08111 -9.93938 -9.61896 -9.44846 -9.13640 -8.80853 -6.84969 -5.70829 -2.98781 0.05926 0.76813 1.17193 1.55240 2.95083 3.09141 3.27511 3.47410 3.52051 3.54298 3.79798 4.34042 4.54218 4.62471 4.69565 4.77082 4.81081 4.90863 4.92197 4.95547 5.01514 5.05274 5.31230 5.33340 5.42031 5.47321 5.50878 5.60412 5.67423 5.75788 5.84129 5.94873 6.00923 6.16545 6.28245 6.38227 6.43014 6.45403 6.54449 6.56041 6.95383 6.97167 7.01048 7.40288 7.75802 8.00393 8.48848 9.59402 10.19208 10.54025 11.52471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.002387 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.668475 B =11728.631720 C =14191.300417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.018 3.982 5 N -0.423 5.423 6 C 0.009 3.991 7 C 0.596 3.404 8 O -0.537 6.537 9 N -0.702 5.702 10 C 0.139 3.861 11 H 0.090 0.910 12 C -0.163 4.163 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.222 4.222 27 S 0.238 5.762 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 20.429 24.717 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.262 4.262 5 N -0.140 5.140 6 C -0.127 4.127 7 C 0.379 3.621 8 O -0.414 6.414 9 N -0.353 5.353 10 C 0.035 3.965 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.585 5.585 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.365 4.365 27 S 0.495 5.505 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.669 20.054 25.446 32.441 hybrid contribution -0.436 -0.664 -1.189 1.430 sum 1.233 19.390 24.257 31.078 Atomic orbital electron populations 1.22833 0.79632 1.03669 1.00347 1.87984 1.20576 1.25907 1.95518 1.20771 0.84111 0.86437 1.02663 1.26605 1.00846 1.06667 0.92042 1.66868 1.03042 1.12633 1.31427 1.20445 0.89972 1.08603 0.93631 1.17007 0.86539 0.76496 0.82030 1.90812 1.16164 1.50610 1.83850 1.45937 1.11649 1.72917 1.04795 1.21128 0.91696 0.97312 0.86330 0.89156 1.22176 1.01256 0.96575 1.02076 1.21936 1.01091 0.97077 0.96316 1.21532 1.00601 0.94577 0.98627 1.21718 1.00084 0.97425 0.97024 1.20648 0.94893 0.91291 0.90694 1.42389 1.69960 1.13561 1.11967 1.19266 1.30007 0.89631 0.97890 0.91249 1.24744 1.01980 0.98364 0.96163 1.69668 1.49600 1.35995 1.03218 0.86176 0.78817 0.84493 0.76673 1.21747 1.21773 1.20768 1.26713 1.06355 1.06424 0.96973 1.82836 0.94461 1.62494 1.10737 0.93346 0.88872 0.93738 0.90760 0.89765 0.75376 0.91345 0.92410 0.92286 0.91251 0.90066 0.92006 0.92023 0.92124 0.92067 0.96590 0.96587 0.78361 0.93586 0.79078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.53 10.69 -35.23 -0.38 -3.90 16 3 C 0.14 0.99 6.51 36.00 0.23 1.22 16 4 C 0.02 0.16 6.97 -13.61 -0.09 0.07 16 5 N -0.42 -4.76 10.12 -8.51 -0.09 -4.84 16 6 C 0.01 0.11 6.70 -84.53 -0.57 -0.46 16 7 C 0.60 7.78 7.76 -12.59 -0.10 7.68 16 8 O -0.54 -8.26 16.37 5.25 0.09 -8.17 16 9 N -0.70 -8.08 4.53 -54.93 -0.25 -8.33 16 10 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 13 C -0.13 -1.37 4.75 -26.73 -0.13 -1.50 16 14 C -0.12 -1.57 5.10 -26.72 -0.14 -1.71 16 15 C -0.12 -2.11 5.33 -26.72 -0.14 -2.25 16 16 C 0.15 3.30 6.26 -4.04 -0.03 3.27 16 17 N -0.73 -19.80 5.60 -59.91 -0.34 -20.14 16 18 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 19 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 21 N -0.94 -29.22 13.06 55.49 0.72 -28.50 16 22 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.22 -2.06 10.62 29.65 0.31 -1.75 16 27 S 0.24 1.63 22.92 -107.50 -2.46 -0.84 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.41 4.47 8.12 -40.82 -0.33 4.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 46 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 47 H 0.19 1.53 8.03 -52.49 -0.42 1.11 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -35.75 410.14 -8.89 -44.64 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.75 Total: 7.52 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 0.40 Total: -1.70 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.05 Total: -61.81 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.29 Total: -12.07 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.46 Total: -0.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.75 -8.89 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176805352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.776 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.55 seconds