Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00252 * 2 1 4 4 C 1.50691 * 109.47384 * 179.97438 * 3 2 1 5 5 N 1.28656 * 124.72160 * 89.99625 * 4 3 2 6 6 C 1.33560 * 115.76426 * 180.02562 * 5 4 3 7 7 C 1.47271 * 123.13591 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99390 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00157 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 C 1.53005 * 109.46867 * 294.99527 * 13 10 9 15 15 C 1.53008 * 109.46774 * 180.02562 * 14 13 10 16 16 C 1.53005 * 109.46774 * 180.02562 * 15 14 13 17 17 N 1.46492 * 109.46855 * 179.97438 * 16 15 14 18 18 C 1.36934 * 120.00299 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99658 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00555 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99515 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47164 * 90.00091 * 22 20 18 24 24 H 1.48500 * 109.46870 * 209.99626 * 22 20 18 25 25 H 1.48497 * 109.47245 * 330.00001 * 22 20 18 26 26 C 1.35201 * 113.72047 * 0.24585 * 6 5 4 27 27 S 1.70771 * 124.72160 * 269.99818 * 4 3 2 28 28 H 1.08997 * 109.46704 * 60.00609 * 1 2 3 29 29 H 1.08994 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47135 * 300.00972 * 1 2 3 31 31 H 1.08997 * 109.47204 * 59.99394 * 3 2 1 32 32 H 1.09000 * 109.46273 * 299.99834 * 3 2 1 33 33 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 36 36 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 37 37 H 1.08990 * 109.47170 * 54.99738 * 13 10 9 38 38 H 1.09001 * 109.46952 * 174.99815 * 13 10 9 39 39 H 1.09000 * 109.47443 * 300.00098 * 14 13 10 40 40 H 1.09001 * 109.47099 * 60.00379 * 14 13 10 41 41 H 1.09000 * 109.47044 * 300.00132 * 15 14 13 42 42 H 1.09001 * 109.47171 * 60.00211 * 15 14 13 43 43 H 1.09001 * 109.46908 * 300.00434 * 16 15 14 44 44 H 1.08996 * 109.46687 * 59.99974 * 16 15 14 45 45 H 0.96999 * 120.00405 * 0.02562 * 17 16 15 46 46 H 0.97006 * 119.99411 * 179.97438 * 21 20 18 47 47 H 1.07997 * 125.59004 * 179.75584 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2435 1.1284 -1.0565 6 6 5.5585 1.0237 -0.8480 7 6 6.5431 0.9449 -1.9404 8 8 7.7284 0.8501 -1.6850 9 7 6.1305 0.9777 -3.2231 10 6 7.1099 0.8987 -4.3097 11 1 7.9280 0.2417 -4.0145 12 6 7.6589 2.2962 -4.6040 13 6 6.4354 0.3411 -5.5647 14 6 5.9969 -1.1024 -5.3093 15 6 5.3228 -1.6602 -6.5645 16 6 4.8838 -3.1035 -6.3089 17 7 4.2379 -3.6374 -7.5105 18 6 3.7594 -4.9204 -7.5180 19 1 3.8586 -5.5388 -6.6381 20 6 3.1479 -5.4266 -8.6567 21 7 3.0275 -4.6731 -9.7291 22 14 2.4958 -7.1770 -8.6670 23 1 1.0836 -7.1819 -8.2081 24 1 2.5703 -7.7248 -10.0452 25 1 3.3153 -8.0159 -7.7559 26 6 5.9010 0.9911 0.4595 27 16 4.4816 1.1100 1.4047 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 5.1852 1.0530 -3.4267 34 1 8.3873 2.2375 -5.4128 35 1 6.8408 2.9532 -4.8993 36 1 8.1395 2.6935 -3.7100 37 1 5.5635 0.9479 -5.8086 38 1 7.1392 0.3652 -6.3966 39 1 6.8688 -1.7093 -5.0653 40 1 5.2930 -1.1265 -4.4773 41 1 4.4510 -1.0534 -6.8089 42 1 6.0270 -1.6362 -7.3962 43 1 5.7554 -3.7105 -6.0642 44 1 4.1795 -3.1270 -5.4773 45 1 4.1491 -3.0821 -8.3008 46 1 2.6004 -5.0269 -10.5250 47 1 6.9067 0.9063 0.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176805352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = -69.555362 kcal Electronic energy + Delta-G solvation = -26474.727679 eV Core-core repulsion = 22590.243139 eV Total energy + Delta-G solvation = -3884.484540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66949 -40.10421 -38.72172 -38.03779 -36.86460 -34.81236 -33.12452 -32.62054 -31.60371 -29.20298 -28.84909 -27.09153 -26.29753 -25.79530 -23.74863 -22.71413 -22.07326 -21.67295 -20.98715 -19.92854 -19.14510 -17.71622 -17.60628 -17.38485 -16.82242 -16.70165 -16.55125 -16.43827 -16.14828 -15.55382 -15.38017 -15.30316 -14.93225 -14.78754 -14.59757 -14.19562 -14.04869 -13.68799 -13.29218 -13.17053 -13.11762 -12.97204 -12.90012 -12.87745 -12.48556 -12.37644 -12.31494 -12.17294 -11.90920 -11.85810 -11.55079 -11.43483 -11.26492 -10.99970 -10.96113 -10.78812 -10.69077 -10.26740 -9.94044 -9.04053 -7.98246 -5.27937 -0.63024 0.15686 0.50315 0.75103 1.45125 1.47742 1.56477 2.12604 2.21786 2.53996 2.64503 3.18425 3.34794 3.55875 3.72349 3.97292 4.01836 4.03116 4.12312 4.15941 4.18678 4.31780 4.37960 4.40402 4.52845 4.57212 4.60311 4.61364 4.71664 4.75478 4.83994 4.90291 4.91755 4.95776 4.97321 5.07947 5.22912 5.29036 5.39419 5.43291 5.49333 5.52115 6.08225 6.21065 6.24647 6.53502 7.07173 7.30157 8.05797 8.30512 9.25522 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.002387 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.668475 B =11728.631720 C =14191.300417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.136 3.864 4 C -0.005 4.005 5 N -0.448 5.448 6 C -0.019 4.019 7 C 0.591 3.409 8 O -0.570 6.570 9 N -0.697 5.697 10 C 0.141 3.859 11 H 0.074 0.926 12 C -0.155 4.155 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.149 3.851 17 N -0.748 5.748 18 C -0.252 4.252 19 H 0.072 0.928 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.271 1.271 26 C -0.233 4.233 27 S 0.324 5.676 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.413 0.587 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.012 0.988 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 20.946 26.215 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.057 3.943 4 C -0.283 4.283 5 N -0.166 5.166 6 C -0.155 4.155 7 C 0.376 3.624 8 O -0.450 6.450 9 N -0.348 5.348 10 C 0.037 3.963 11 H 0.092 0.908 12 C -0.214 4.214 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.149 4.149 16 C 0.023 3.977 17 N -0.391 5.391 18 C -0.384 4.384 19 H 0.090 0.910 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.195 1.195 26 C -0.376 4.376 27 S 0.582 5.418 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.030 0.970 45 H 0.206 0.794 46 H 0.062 0.938 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.982 20.585 26.977 33.949 hybrid contribution -0.251 -0.811 -1.536 1.755 sum 0.731 19.775 25.442 32.231 Atomic orbital electron populations 1.22975 0.78265 1.04017 1.01658 1.87923 1.22222 1.27302 1.95799 1.21001 0.82873 0.85973 1.04438 1.27093 1.02058 1.06272 0.92915 1.66850 1.02973 1.13794 1.32952 1.20337 0.90198 1.11056 0.93932 1.17302 0.86505 0.75899 0.82730 1.90776 1.17455 1.52410 1.84386 1.45963 1.11888 1.72243 1.04686 1.21117 0.91167 0.97992 0.86043 0.90760 1.22109 1.01785 0.95498 1.01966 1.21849 1.01827 0.95040 0.96638 1.21422 0.99964 0.96312 0.96674 1.21587 1.00304 0.94394 0.98589 1.20827 0.94155 0.94008 0.88739 1.42611 1.70321 1.12998 1.13164 1.19655 1.29884 0.90802 0.98070 0.91024 1.25629 1.02631 1.02707 0.95833 1.69822 1.50569 1.37876 1.03740 0.85090 0.78256 0.79449 0.76675 1.21082 1.21733 1.19543 1.27016 1.08181 1.05385 0.97057 1.82481 0.91515 1.59950 1.07894 0.93057 0.89095 0.91391 0.87360 0.89625 0.75012 0.89846 0.91411 0.93626 0.90132 0.88720 0.92334 0.92591 0.92046 0.91904 0.96824 0.96972 0.79350 0.93808 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.18 10.69 -148.98 -1.59 -8.77 16 3 C 0.14 1.70 6.51 71.23 0.46 2.17 16 4 C 0.00 -0.08 6.97 88.57 0.62 0.54 16 5 N -0.45 -10.00 10.12 -180.84 -1.83 -11.83 16 6 C -0.02 -0.45 6.70 40.56 0.27 -0.18 16 7 C 0.59 15.82 7.76 86.62 0.67 16.49 16 8 O -0.57 -18.10 16.37 -4.11 -0.07 -18.17 16 9 N -0.70 -16.17 4.53 -445.94 -2.02 -18.18 16 10 C 0.14 3.01 2.57 44.99 0.12 3.12 16 11 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 12 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 13 C -0.12 -2.36 4.75 30.60 0.15 -2.21 16 14 C -0.11 -2.81 5.10 30.60 0.16 -2.66 16 15 C -0.11 -3.69 5.33 30.60 0.16 -3.53 16 16 C 0.15 6.49 6.26 86.38 0.54 7.03 16 17 N -0.75 -40.72 5.60 -343.47 -1.92 -42.65 16 18 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 22 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 26 C -0.23 -4.18 10.62 67.12 0.71 -3.47 16 27 S 0.32 3.78 22.92 -56.49 -1.29 2.48 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.41 9.01 8.12 -92.71 -0.75 8.26 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.37 21.27 7.67 -92.71 -0.71 20.56 16 46 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 47 H 0.20 3.10 8.03 -2.91 -0.02 3.07 16 Total: -1.00 -77.49 410.14 0.19 -77.29 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.49 Total: 32.52 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 7.10 Total: -1.45 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -5.49 Total: -133.39 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.66 Total: -26.94 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.29 Total: 2.48 kcal Total: -77.49 0.19 -77.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176805352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.739 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds