Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47384 * 2 1 4 4 C 1.46761 * 124.35484 * 89.99571 * 3 2 1 5 5 C 1.54483 * 105.47479 * 162.98745 * 4 3 2 6 6 C 1.54623 * 101.76476 * 25.41567 * 5 4 3 7 7 H 1.08997 * 110.48869 * 216.38790 * 6 5 4 8 8 N 1.46903 * 110.48418 * 93.88408 * 6 5 4 9 9 C 1.46898 * 111.00103 * 155.00339 * 8 6 5 10 10 H 1.09005 * 110.91456 * 328.89267 * 9 8 6 11 11 C 1.55158 * 111.00433 * 204.99863 * 9 8 6 12 12 C 1.54318 * 102.94194 * 206.42014 * 11 9 8 13 13 N 1.47021 * 107.27468 * 22.19014 * 12 11 9 14 14 C 1.34774 * 125.65194 * 181.02225 * 13 12 11 15 15 O 1.21281 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99738 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00259 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00080 * 0.28240 * 18 17 16 20 20 C 1.38805 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99709 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00492 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00509 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00339 * 22 20 18 26 26 C 1.47429 * 108.69859 * 1.28731 * 13 12 11 27 27 C 1.34424 * 124.34717 * 270.00204 * 3 2 1 28 28 O 1.21276 * 124.94255 * 0.43807 * 27 3 2 29 29 H 1.08992 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46849 * 300.00527 * 1 2 3 31 31 H 1.09007 * 109.47090 * 59.99967 * 1 2 3 32 32 H 1.08994 * 109.47228 * 239.99733 * 2 1 3 33 33 H 1.09001 * 109.47173 * 119.99566 * 2 1 3 34 34 H 1.09003 * 110.24524 * 43.98733 * 4 3 2 35 35 H 1.08999 * 110.31952 * 282.02649 * 4 3 2 36 36 H 1.08999 * 110.96489 * 267.29626 * 5 4 3 37 37 H 1.09002 * 110.99775 * 143.55180 * 5 4 3 38 38 H 1.00904 * 110.99332 * 278.95128 * 8 6 5 39 39 H 1.09003 * 110.72223 * 88.05099 * 11 9 8 40 40 H 1.09001 * 110.71921 * 324.78714 * 11 9 8 41 41 H 1.09004 * 109.88307 * 262.77502 * 12 11 9 42 42 H 1.09004 * 109.88116 * 141.61204 * 12 11 9 43 43 H 1.09005 * 109.46991 * 60.00046 * 16 14 13 44 44 H 1.08994 * 109.47632 * 300.00284 * 16 14 13 45 45 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.36519 * 94.48212 * 26 13 12 47 47 H 1.08997 * 110.36452 * 216.80060 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 3.1745 3.3442 0.7485 6 6 2.7696 3.4754 -0.7380 7 1 3.6322 3.7482 -1.3458 8 7 1.6982 4.4684 -0.8933 9 6 1.7018 5.0395 -2.2466 10 1 2.7125 5.0685 -2.6541 11 6 1.0578 6.4511 -2.2563 12 6 0.5335 6.5819 -3.7018 13 7 0.3740 5.2204 -4.2332 14 6 -0.0455 4.9059 -5.4748 15 8 -0.1405 3.7432 -5.8065 16 6 -0.3966 5.9990 -6.4509 17 16 -0.9202 5.2622 -8.0190 18 6 -1.2608 6.7223 -8.9446 19 1 -1.1179 7.6932 -8.4936 20 6 -1.7066 6.6250 -10.2555 21 7 -1.8754 5.4418 -10.8070 22 14 -2.0669 8.1730 -11.2369 23 1 -0.8376 8.6049 -11.9492 24 1 -3.1395 7.8941 -12.2252 25 1 -2.5101 9.2508 -10.3164 26 6 0.7428 4.2560 -3.1808 27 6 2.2712 2.0963 -1.1099 28 8 2.1210 1.6945 -2.2442 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8324 1.5533 1.9383 35 1 1.3644 2.5309 1.6442 36 1 4.2332 3.1033 0.8447 37 1 2.9313 4.2520 1.3007 38 1 0.7989 4.0675 -0.6724 39 1 1.8043 7.2171 -2.0460 40 1 0.2365 6.5052 -1.5417 41 1 1.2514 7.1346 -4.3080 42 1 -0.4281 7.0951 -3.7023 43 1 0.4764 6.6295 -6.6198 44 1 -1.2076 6.6029 -6.0441 45 1 -2.1873 5.3738 -11.7230 46 1 -0.1435 3.9335 -2.6343 47 1 1.2547 3.3975 -3.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = -86.300808 kcal Electronic energy + Delta-G solvation = -27582.155983 eV Core-core repulsion = 23696.945306 eV Total energy + Delta-G solvation = -3885.210677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81145 -40.98368 -38.82090 -37.61940 -36.22932 -34.61230 -33.92196 -31.91101 -30.85310 -30.05616 -28.76748 -27.71219 -26.94016 -24.53134 -24.36376 -22.44439 -21.96875 -20.78091 -20.48531 -19.60580 -18.16526 -18.09043 -17.73220 -17.18466 -17.03663 -16.90398 -16.46287 -15.94176 -15.63227 -15.57128 -15.19041 -14.89224 -14.61581 -14.55855 -14.45482 -14.31966 -14.07387 -13.72383 -13.69777 -13.56070 -13.36836 -13.18303 -12.96038 -12.90035 -12.82584 -12.69736 -12.62894 -12.16486 -12.09626 -11.88089 -11.77561 -11.66372 -11.22573 -11.16256 -11.05971 -10.31863 -9.85086 -9.76312 -9.57427 -8.72881 -8.36562 -6.16753 1.19626 1.38795 1.41985 1.42963 1.48671 1.55070 2.00757 2.01191 2.25129 2.90159 2.97414 3.20807 3.30735 3.45316 3.60203 3.65044 3.86749 3.92205 4.05092 4.08503 4.15302 4.20495 4.24902 4.26606 4.35380 4.39467 4.42364 4.55986 4.64355 4.68162 4.69607 4.79510 4.81140 4.88920 5.03736 5.11321 5.16943 5.19129 5.22195 5.29366 5.39152 5.59530 5.75588 6.00405 6.10386 6.17687 6.33027 7.03607 7.04372 7.09112 8.73083 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002184 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.591408 B =12816.901579 C =13717.127935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.094 3.906 5 C -0.109 4.109 6 C 0.053 3.947 7 H 0.110 0.890 8 N -0.622 5.622 9 C 0.084 3.916 10 H 0.098 0.902 11 C -0.098 4.098 12 C 0.086 3.914 13 N -0.615 5.615 14 C 0.540 3.460 15 O -0.573 6.573 16 C -0.114 4.114 17 S -0.159 6.159 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.913 5.913 22 Si 1.004 2.996 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.255 1.255 26 C 0.082 3.918 27 C 0.466 3.534 28 O -0.579 6.579 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.347 0.653 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.054 0.946 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.221 0.574 34.960 36.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.027 4.027 5 C -0.146 4.146 6 C -0.061 4.061 7 H 0.128 0.872 8 N -0.253 5.253 9 C -0.027 4.027 10 H 0.116 0.884 11 C -0.136 4.136 12 C -0.036 4.036 13 N -0.351 5.351 14 C 0.328 3.672 15 O -0.452 6.452 16 C -0.265 4.265 17 S 0.068 5.932 18 C -0.691 4.691 19 H 0.103 0.897 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.825 3.175 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.179 1.179 26 C -0.043 4.043 27 C 0.252 3.748 28 O -0.457 6.457 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.281 -1.028 34.001 35.838 hybrid contribution -0.850 0.395 -1.606 1.860 sum 10.431 -0.632 32.395 34.039 Atomic orbital electron populations 1.22106 0.95653 1.03048 1.01441 1.21464 0.94489 0.81153 1.03484 1.48594 1.64255 1.13968 1.08024 1.22468 1.00973 0.93038 0.86204 1.22720 1.00814 0.99680 0.91434 1.22665 0.96240 0.85976 1.01189 0.87182 1.60980 1.07839 1.33104 1.23327 1.22944 0.98534 0.94693 0.86553 0.88404 1.22620 1.01936 0.95666 0.93410 1.22505 1.02712 0.81977 0.96387 1.48383 1.65965 1.09970 1.10736 1.19985 0.76186 0.89221 0.81790 1.90699 1.54338 1.22541 1.77628 1.23265 1.05499 1.00061 0.97699 1.85701 1.86467 1.14545 1.06456 1.23182 1.52150 0.92963 1.00846 0.89669 1.26219 0.94196 1.01109 0.97881 1.70204 1.44302 1.25663 1.14789 0.84883 0.78251 0.76850 0.77540 1.19180 1.20260 1.17924 1.23091 0.98262 0.93286 0.89695 1.22592 0.77644 0.90110 0.84421 1.90785 1.55104 1.76273 1.23548 0.90216 0.90661 0.95784 0.92762 0.86804 0.87720 0.89581 0.88046 0.85851 0.83325 0.86406 0.88634 0.89890 0.89912 0.87249 0.87240 0.91963 0.92784 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.24 71.98 0.74 -1.63 16 2 C 0.12 1.61 6.65 86.38 0.57 2.18 16 3 N -0.61 -8.79 2.93 -817.99 -2.40 -11.19 16 4 C 0.09 0.46 7.35 86.83 0.64 1.10 16 5 C -0.11 -0.47 6.89 31.65 0.22 -0.25 16 6 C 0.05 0.69 3.26 44.91 0.15 0.84 16 7 H 0.11 1.55 7.45 -2.39 -0.02 1.53 16 8 N -0.62 -7.99 6.22 -462.04 -2.88 -10.87 16 9 C 0.08 1.50 3.38 46.38 0.16 1.65 16 10 H 0.10 1.80 7.45 -2.38 -0.02 1.78 16 11 C -0.10 -1.27 6.64 31.78 0.21 -1.06 16 12 C 0.09 1.74 6.48 86.73 0.56 2.30 16 13 N -0.62 -19.83 3.32 -811.36 -2.70 -22.53 16 14 C 0.54 23.71 7.87 87.66 0.69 24.40 16 15 O -0.57 -31.48 16.12 -3.03 -0.05 -31.53 16 16 C -0.11 -5.01 5.35 71.24 0.38 -4.63 16 17 S -0.16 -9.42 20.57 -56.49 -1.16 -10.58 16 18 C -0.54 -32.13 9.50 67.96 0.65 -31.48 16 19 H 0.09 4.63 7.80 -2.91 -0.02 4.61 16 20 C 0.01 0.61 5.49 84.86 0.47 1.08 16 21 N -0.91 -57.94 13.22 21.65 0.29 -57.65 16 22 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 26 C 0.08 2.41 5.99 86.93 0.52 2.93 16 27 C 0.47 10.09 7.17 87.90 0.63 10.72 16 28 O -0.58 -19.88 15.84 -3.02 -0.05 -19.93 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.12 0.16 8.08 -2.39 -0.02 0.14 16 38 H 0.35 4.80 7.89 -89.69 -0.71 4.09 16 39 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 44 H 0.11 4.31 8.14 -2.40 -0.02 4.29 16 45 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 46 H 0.05 1.60 7.76 -2.38 -0.02 1.59 16 47 H 0.05 1.90 6.60 -2.39 -0.02 1.88 16 Total: -1.00 -92.44 396.49 -0.08 -92.52 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.26 Total: 17.00 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.58 Total: 8.16 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -7.69 Total: -102.24 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.10 Total: -51.46 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.16 Total: -10.58 kcal Total: -92.44 -0.08 -92.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.214 kcal (2) G-P(sol) polarization free energy of solvation -92.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds