Wall clock time and date at job start Sat Apr 11 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00114 * 2 1 4 4 N 1.46510 * 109.46671 * 125.00061 * 3 2 1 5 5 C 1.34773 * 119.99417 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00735 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99734 * 180.02562 * 5 4 3 8 8 H 1.09004 * 109.47596 * 59.99639 * 7 5 4 9 9 C 1.53002 * 109.47268 * 299.99983 * 7 5 4 10 10 N 1.46900 * 109.47533 * 179.97438 * 7 5 4 11 11 C 1.46894 * 111.00362 * 204.99764 * 10 7 5 12 12 H 1.09000 * 110.89215 * 328.88461 * 11 10 7 13 13 C 1.55159 * 111.00689 * 205.00127 * 11 10 7 14 14 C 1.54320 * 102.94349 * 206.42841 * 13 11 10 15 15 N 1.47018 * 107.27210 * 22.19183 * 14 13 11 16 16 C 1.34784 * 125.64722 * 181.02498 * 15 14 13 17 17 O 1.21283 * 119.99667 * 180.02562 * 16 15 14 18 18 C 1.50693 * 119.99987 * 0.02568 * 16 15 14 19 19 S 1.81005 * 109.47250 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00092 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00144 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99514 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00351 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46756 * 90.00181 * 24 22 20 26 26 H 1.48501 * 109.47199 * 209.99799 * 24 22 20 27 27 H 1.48492 * 109.47323 * 330.00208 * 24 22 20 28 28 C 1.47421 * 108.70379 * 1.28563 * 15 14 13 29 29 H 1.07997 * 120.00475 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99533 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99768 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47053 * 5.00449 * 3 2 1 33 33 H 1.08994 * 109.47182 * 244.99954 * 3 2 1 34 34 H 0.96994 * 120.00145 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47027 * 59.99624 * 9 7 5 36 36 H 1.08995 * 109.47262 * 180.02562 * 9 7 5 37 37 H 1.09007 * 109.46657 * 299.99791 * 9 7 5 38 38 H 1.00898 * 111.00032 * 328.95957 * 10 7 5 39 39 H 1.08996 * 110.71852 * 88.06342 * 13 11 10 40 40 H 1.08999 * 110.71607 * 324.79233 * 13 11 10 41 41 H 1.09010 * 109.88205 * 262.77471 * 14 13 11 42 42 H 1.09002 * 109.88208 * 141.61136 * 14 13 11 43 43 H 1.09002 * 109.47106 * 299.99491 * 18 16 15 44 44 H 1.09003 * 109.47551 * 59.99749 * 18 16 15 45 45 H 0.97000 * 119.99618 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.36058 * 94.48410 * 28 15 14 47 47 H 1.08997 * 110.36930 * 216.80538 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 3.7783 2.4088 1.3335 6 8 3.7146 3.3558 0.5785 7 6 4.7357 2.4361 2.4970 8 1 5.4409 1.6098 2.4069 9 6 3.9533 2.2982 3.8046 10 7 5.4702 3.7083 2.4972 11 6 6.7621 3.5702 3.1825 12 1 6.7037 2.8249 3.9757 13 6 7.2462 4.9360 3.7373 14 6 8.7801 4.7706 3.7728 15 7 9.1267 3.7072 2.8186 16 6 10.3697 3.2490 2.5704 17 8 10.5390 2.3644 1.7582 18 6 11.5492 3.8360 3.3021 19 16 13.0677 3.0179 2.7532 20 6 14.2502 3.8743 3.7395 21 1 13.9266 4.6464 4.4218 22 6 15.5977 3.5573 3.6389 23 7 15.9923 2.6173 2.8062 24 14 16.8515 4.4656 4.6840 25 1 17.0342 3.7494 5.9720 26 1 18.1480 4.5246 3.9622 27 1 16.3692 5.8449 4.9487 28 6 7.8902 3.2293 2.1736 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.0446 0.5746 1.7356 35 1 3.4086 1.3541 3.8043 36 1 4.6456 2.3184 4.6462 37 1 3.2481 3.1245 3.8949 38 1 5.5943 4.0543 1.5576 39 1 6.8533 5.1061 4.7396 40 1 6.9612 5.7472 3.0674 41 1 9.0993 4.4870 4.7758 42 1 9.2605 5.7037 3.4786 43 1 11.6145 4.9030 3.0892 44 1 11.4226 3.6865 4.3744 45 1 16.9340 2.3955 2.7361 46 1 7.7287 3.7507 1.2300 47 1 7.9394 2.1529 2.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181123226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:00 Heat of formation + Delta-G solvation = -45.565512 kcal Electronic energy + Delta-G solvation = -26458.400556 eV Core-core repulsion = 22574.956294 eV Total energy + Delta-G solvation = -3883.444262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = -0.70 seconds Orbital eigenvalues (eV) -40.53979 -39.73722 -37.71036 -36.36629 -35.40822 -33.41317 -32.42767 -31.79114 -29.85500 -29.51721 -27.13754 -26.91551 -25.47807 -24.07430 -22.92434 -21.11140 -20.98066 -20.17381 -19.33207 -17.99065 -17.55311 -17.10548 -16.57896 -16.45210 -16.07916 -15.49567 -15.26341 -14.84686 -14.79164 -14.61500 -14.08729 -13.94845 -13.86561 -13.70308 -13.49747 -13.09198 -12.91444 -12.69708 -12.65834 -12.57591 -12.42961 -12.12677 -11.81869 -11.75777 -11.70689 -11.55927 -11.06190 -11.01887 -10.96403 -10.76308 -10.49150 -10.00350 -9.82031 -9.53620 -9.46054 -9.06406 -8.88424 -8.49619 -8.23479 -6.50366 -6.21464 -3.92234 1.48326 2.19489 2.73098 2.91281 3.05201 3.22547 3.25864 3.30562 3.56608 3.78308 4.15742 4.20239 4.26855 4.31212 4.46175 4.49926 4.63050 4.73038 4.81864 4.99511 5.03959 5.06251 5.13276 5.14096 5.20244 5.23203 5.26222 5.36331 5.48062 5.58865 5.64782 5.65701 5.74439 5.80126 5.82244 5.84788 5.93719 5.97468 6.09419 6.14414 6.35255 6.56699 6.91867 7.04916 7.59694 7.65719 7.74255 8.35469 8.54329 9.23786 10.86007 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.001721 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.976921 B =16265.529759 C =16902.908111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.514 3.486 6 O -0.529 6.529 7 C 0.064 3.936 8 H 0.076 0.924 9 C -0.136 4.136 10 N -0.657 5.657 11 C 0.074 3.926 12 H 0.096 0.904 13 C -0.116 4.116 14 C 0.100 3.900 15 N -0.624 5.624 16 C 0.548 3.452 17 O -0.517 6.517 18 C -0.146 4.146 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.080 3.920 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.359 0.641 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.704 -1.903 1.521 31.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.300 3.700 6 O -0.405 6.405 7 C -0.049 4.049 8 H 0.093 0.907 9 C -0.194 4.194 10 N -0.292 5.292 11 C -0.037 4.037 12 H 0.114 0.886 13 C -0.155 4.155 14 C -0.023 4.023 15 N -0.361 5.361 16 C 0.337 3.663 17 O -0.391 6.391 18 C -0.297 4.297 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.045 4.045 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.183 0.817 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.588 -2.395 0.185 31.679 hybrid contribution 1.142 0.673 1.171 1.769 sum -30.446 -1.722 1.356 30.525 Atomic orbital electron populations 1.24006 0.95773 1.02524 0.97867 1.23006 0.96270 0.98089 1.02308 1.20429 0.91809 0.95674 0.89804 1.45946 1.41132 1.19982 1.30891 1.20682 0.81154 0.82188 0.85998 1.90721 1.67766 1.35047 1.46959 1.21532 0.95384 0.93634 0.94393 0.90670 1.21771 1.00385 1.01966 0.95305 1.60530 1.18248 1.25056 1.25378 1.22925 0.86323 0.98330 0.96140 0.88575 1.22608 0.93022 0.97229 1.02602 1.22066 0.95530 0.91251 0.93497 1.48388 1.05708 1.39224 1.42830 1.20071 0.82032 0.81969 0.82260 1.90706 1.84083 1.30008 1.34337 1.23501 0.98871 1.04403 1.02878 1.85397 0.92557 1.49778 1.55778 1.22860 0.93541 1.24441 1.27478 0.90907 1.24993 0.97652 0.95255 0.95659 1.70024 1.16635 1.29042 1.34597 0.86161 0.79834 0.79725 0.79746 1.20266 1.20742 1.19674 1.22938 0.84660 1.00674 0.96235 0.87774 0.88125 0.86566 0.90928 0.90498 0.76267 0.92109 0.91161 0.91242 0.81734 0.89591 0.89921 0.91106 0.91084 0.89237 0.89243 0.92188 0.91607 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.74 9.63 -36.03 -0.35 -1.09 16 3 C 0.15 0.88 6.11 -5.19 -0.03 0.85 16 4 N -0.73 -4.39 5.44 -61.47 -0.33 -4.72 16 5 C 0.51 4.52 7.18 -10.99 -0.08 4.44 16 6 O -0.53 -6.71 15.64 5.56 0.09 -6.62 16 7 C 0.06 0.46 2.89 -68.86 -0.20 0.26 16 8 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 9 C -0.14 -0.74 9.30 37.16 0.35 -0.40 16 10 N -0.66 -5.75 6.10 -98.59 -0.60 -6.35 16 11 C 0.07 0.66 3.13 -65.45 -0.21 0.45 16 12 H 0.10 0.79 7.25 -51.93 -0.38 0.42 16 13 C -0.12 -0.98 6.64 -24.90 -0.17 -1.14 16 14 C 0.10 1.08 6.48 -3.07 -0.02 1.07 16 15 N -0.62 -9.16 3.32 -170.38 -0.57 -9.73 16 16 C 0.55 10.83 7.87 -10.99 -0.09 10.74 16 17 O -0.52 -12.27 16.12 5.56 0.09 -12.18 16 18 C -0.15 -3.04 5.35 36.00 0.19 -2.85 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.08 0.98 6.50 -2.41 -0.02 0.97 16 29 H 0.10 0.26 8.06 -52.49 -0.42 -0.16 16 30 H 0.10 0.34 7.84 -52.48 -0.41 -0.07 16 31 H 0.12 0.38 8.06 -52.49 -0.42 -0.04 16 32 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.43 7.88 -40.82 -0.32 1.11 16 35 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 36 H 0.07 0.37 7.53 -51.93 -0.39 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.36 3.68 6.90 -39.29 -0.27 3.41 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.07 0.82 7.76 -51.93 -0.40 0.42 16 47 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 405.48 15.07 6.11 6.11 Total: -1.00 -36.68 405.48 -9.28 -45.96 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.57 Total: 0.47 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 0.00 Total: 0.09 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.77 Total: -46.37 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.68 -9.28 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181123226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.399 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.70 seconds