Wall clock time and date at job start Sat Apr 11 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 N 1.46902 * 109.47236 * 240.00061 * 2 1 3 5 5 C 1.46899 * 110.99498 * 84.99488 * 4 2 1 6 6 H 1.08994 * 110.64810 * 328.14454 * 5 4 2 7 7 C 1.55159 * 110.71673 * 204.99686 * 5 4 2 8 8 C 1.54914 * 101.58251 * 206.13827 * 7 5 4 9 9 N 1.47427 * 104.82699 * 37.01617 * 8 7 5 10 10 C 1.34780 * 125.64326 * 155.90971 * 9 8 7 11 11 O 1.21284 * 119.99641 * 179.97438 * 10 9 8 12 12 C 1.50701 * 120.00330 * 359.96627 * 10 9 8 13 13 S 1.80996 * 109.47220 * 180.02562 * 12 10 9 14 14 C 1.76192 * 100.00266 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99786 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00493 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00217 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99819 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46856 * 89.99796 * 18 16 14 20 20 H 1.48494 * 109.47341 * 210.00025 * 18 16 14 21 21 H 1.48496 * 109.46904 * 330.00360 * 18 16 14 22 22 C 1.47012 * 108.70536 * 335.86582 * 9 8 7 23 23 C 1.50707 * 109.47193 * 119.99964 * 2 1 3 24 24 O 1.21279 * 119.99475 * 119.99696 * 23 2 1 25 25 N 1.34777 * 119.99928 * 300.00412 * 23 2 1 26 26 C 1.46497 * 119.99862 * 180.02562 * 25 23 2 27 27 C 1.53000 * 117.50070 * 204.99853 * 26 25 23 28 28 C 1.52997 * 117.50064 * 136.37107 * 26 25 23 29 29 H 1.09003 * 109.46991 * 299.99457 * 1 2 3 30 30 H 1.08997 * 109.47523 * 59.99675 * 1 2 3 31 31 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.00894 * 111.00249 * 208.95381 * 4 2 1 33 33 H 1.09000 * 111.00926 * 324.21782 * 7 5 4 34 34 H 1.09005 * 111.00107 * 88.06967 * 7 5 4 35 35 H 1.09000 * 110.36415 * 155.85156 * 8 7 5 36 36 H 1.08994 * 110.36789 * 278.17258 * 8 7 5 37 37 H 1.08996 * 109.46844 * 300.00462 * 12 10 9 38 38 H 1.09003 * 109.46392 * 60.00343 * 12 10 9 39 39 H 0.97005 * 119.99863 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.88739 * 241.64205 * 22 9 8 41 41 H 1.09006 * 109.88400 * 120.47797 * 22 9 8 42 42 H 0.96997 * 119.99682 * 359.97438 * 25 23 2 43 43 H 1.09002 * 115.55899 * 350.68275 * 26 25 23 44 44 H 1.08990 * 117.49990 * 145.01695 * 27 26 25 45 45 H 1.09004 * 117.49237 * 359.97438 * 27 26 25 46 46 H 1.08999 * 117.49685 * 0.02562 * 28 26 25 47 47 H 1.08997 * 117.50044 * 214.97835 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2227 -2.3468 6 1 1.2980 0.9766 -2.2804 7 6 1.9779 -0.5621 -3.6812 8 6 2.7191 0.3848 -4.6578 9 7 3.8291 0.9479 -3.8678 10 6 4.9790 1.4410 -4.3691 11 8 5.8267 1.8815 -3.6219 12 6 5.2114 1.4449 -5.8581 13 16 6.8339 2.1641 -6.2136 14 6 6.8418 2.0474 -7.9716 15 1 5.9934 1.6237 -8.4885 16 6 7.9383 2.4999 -8.6923 17 7 7.9439 2.4132 -10.0057 18 14 9.4054 3.2334 -7.7984 19 1 10.3759 2.1574 -7.4740 20 1 10.0594 4.2446 -8.6672 21 1 8.9469 3.8813 -6.5433 22 6 3.4737 0.8836 -2.4427 23 6 2.0324 -0.7104 1.2305 24 8 2.7296 -1.6965 1.1191 25 7 1.7067 -0.2500 2.4546 26 6 2.1955 -0.9403 3.6508 27 6 1.3831 -0.7847 4.9378 28 6 2.7323 -0.0775 4.7946 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 -1.0288 33 1 2.4851 -1.5243 -3.6094 34 1 0.9370 -0.6921 -3.9776 35 1 3.1055 -0.1753 -5.5093 36 1 2.0529 1.1785 -4.9956 37 1 5.1774 0.4223 -6.2337 38 1 4.4365 2.0369 -6.3451 39 1 8.7101 2.7298 -10.5094 40 1 3.4359 1.8893 -2.0242 41 1 4.2071 0.2832 -1.9044 42 1 1.1493 0.5388 2.5436 43 1 2.6802 -1.9006 3.4745 44 1 1.3332 -1.6426 5.6083 45 1 0.4850 -0.1684 4.8946 46 1 2.7213 1.0038 4.6573 47 1 3.5700 -0.4701 5.3709 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181124945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:28 Heat of formation + Delta-G solvation = -37.399948 kcal Electronic energy + Delta-G solvation = -26677.143452 eV Core-core repulsion = 22794.053275 eV Total energy + Delta-G solvation = -3883.090177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.65911 -39.86446 -38.05426 -37.39851 -35.48644 -33.52644 -32.43753 -31.73166 -29.86759 -29.61169 -27.21851 -25.61422 -24.98553 -23.32600 -22.95119 -22.04248 -21.10414 -20.74648 -19.44933 -18.02891 -17.54575 -17.37659 -16.75169 -16.59396 -15.85456 -15.44764 -15.23289 -15.06156 -14.89145 -14.73976 -14.11101 -14.00167 -13.85053 -13.55814 -13.27408 -13.06966 -12.84474 -12.83815 -12.75298 -12.45321 -12.17706 -12.16126 -11.93727 -11.92770 -11.78820 -11.66885 -11.26401 -11.08821 -11.05848 -10.99730 -10.60737 -10.22639 -9.86086 -9.57032 -9.31329 -9.00099 -8.94729 -8.58902 -8.49471 -6.92003 -6.28585 -4.00436 2.07094 2.43406 2.67765 2.93546 3.17650 3.33820 3.35599 3.50958 3.57113 3.69412 4.08308 4.20081 4.22334 4.33734 4.35934 4.38196 4.42554 4.55673 4.64899 4.74562 4.79112 4.99840 5.06214 5.08932 5.10558 5.12659 5.21046 5.22267 5.29028 5.37436 5.46610 5.50507 5.50738 5.58491 5.68816 5.73217 5.77067 5.90261 5.94229 6.01362 6.29885 6.49365 6.85800 6.98566 7.55176 7.68632 7.94435 8.41698 8.42407 9.17627 10.80560 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.001896 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.579048 B =14766.295398 C =15746.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 H 0.075 0.925 4 N -0.658 5.658 5 C 0.076 3.924 6 H 0.096 0.904 7 C -0.117 4.117 8 C 0.097 3.903 9 N -0.622 5.622 10 C 0.546 3.454 11 O -0.519 6.519 12 C -0.117 4.117 13 S -0.143 6.143 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.236 1.236 22 C 0.083 3.917 23 C 0.518 3.482 24 O -0.525 6.525 25 N -0.701 5.701 26 C 0.078 3.922 27 C -0.188 4.188 28 C -0.193 4.193 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.361 0.639 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.402 0.598 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.060 -5.310 26.435 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.049 4.049 3 H 0.093 0.907 4 N -0.293 5.293 5 C -0.035 4.035 6 H 0.114 0.886 7 C -0.156 4.156 8 C -0.027 4.027 9 N -0.359 5.359 10 C 0.334 3.666 11 O -0.393 6.393 12 C -0.267 4.267 13 S 0.083 5.917 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.112 4.112 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.043 4.043 23 C 0.304 3.696 24 O -0.400 6.400 25 N -0.352 5.352 26 C -0.028 4.028 27 C -0.227 4.227 28 C -0.232 4.232 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.237 0.763 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.715 -5.580 27.071 33.951 hybrid contribution 0.207 0.808 -0.434 0.940 sum -19.508 -4.772 26.637 33.360 Atomic orbital electron populations 1.21778 0.91855 1.03514 1.02303 1.21533 0.97839 0.96919 0.88600 0.90709 1.60601 1.35809 1.30585 1.02329 1.22762 0.95441 0.93937 0.91393 0.88566 1.22777 1.01433 0.98759 0.92629 1.22408 0.88400 0.96561 0.95284 1.48364 1.17590 1.63223 1.06761 1.20041 0.79648 0.76460 0.90411 1.90706 1.42810 1.45290 1.60517 1.23249 1.04456 1.05568 0.93459 1.84795 1.17208 1.80344 1.09317 1.22305 1.08114 1.48010 0.88425 0.89356 1.24701 0.97923 0.94247 0.94378 1.69937 1.31119 1.45271 1.05311 0.86739 0.83187 0.80390 0.81571 1.19187 1.19922 1.15962 1.22659 0.96543 1.01271 0.83800 1.20681 0.79721 0.84645 0.84532 1.90726 1.37223 1.25782 1.86266 1.45336 1.53479 1.31665 1.04734 1.21629 1.02196 0.98535 0.80406 1.23383 0.95560 1.03816 0.99912 1.23444 0.97755 0.99615 1.02381 0.92174 0.91104 0.91120 0.81555 0.89806 0.89326 0.89844 0.91073 0.88501 0.88483 0.91942 0.91754 0.91544 0.76295 0.84367 0.87767 0.88415 0.88404 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.30 37.16 0.35 -0.30 16 2 C 0.06 0.43 2.90 -68.86 -0.20 0.23 16 3 H 0.08 0.43 7.86 -51.93 -0.41 0.02 16 4 N -0.66 -5.59 6.07 -99.03 -0.60 -6.19 16 5 C 0.08 0.62 3.02 -65.87 -0.20 0.42 16 6 H 0.10 0.64 7.23 -51.93 -0.38 0.26 16 7 C -0.12 -0.95 6.77 -24.58 -0.17 -1.11 16 8 C 0.10 0.98 6.69 -2.53 -0.02 0.96 16 9 N -0.62 -8.71 3.33 -170.52 -0.57 -9.27 16 10 C 0.55 10.32 7.87 -10.98 -0.09 10.23 16 11 O -0.52 -11.79 16.19 5.55 0.09 -11.71 16 12 C -0.12 -2.34 5.16 36.01 0.19 -2.15 16 13 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 14 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 15 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 16 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 17 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 18 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 22 C 0.08 0.96 6.59 -3.07 -0.02 0.94 16 23 C 0.52 4.45 7.18 -10.98 -0.08 4.37 16 24 O -0.53 -6.66 15.21 5.56 0.08 -6.58 16 25 N -0.70 -4.12 5.46 -53.81 -0.29 -4.42 16 26 C 0.08 0.48 6.43 -67.93 -0.44 0.05 16 27 C -0.19 -0.75 10.46 -26.73 -0.28 -1.03 16 28 C -0.19 -0.91 10.46 -26.73 -0.28 -1.19 16 29 H 0.06 0.16 7.56 -51.93 -0.39 -0.23 16 30 H 0.07 0.30 7.51 -51.93 -0.39 -0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.36 3.78 6.76 -39.29 -0.27 3.52 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.81 7.85 -51.92 -0.41 1.41 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 42 H 0.40 1.26 8.25 -40.82 -0.34 0.93 16 43 H 0.14 1.09 7.40 -51.93 -0.38 0.71 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -36.55 398.96 -9.77 -46.32 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.54 Total: 0.80 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.02 Total: -0.68 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.69 Total: -45.75 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.55 -9.77 -46.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181124945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.916 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds