Wall clock time and date at job start Sat Apr 11 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47084 * 2 1 4 4 C 1.34777 * 120.00118 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00006 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99971 * 179.97438 * 4 3 2 7 7 N 1.46906 * 109.46955 * 174.02638 * 6 4 3 8 8 C 1.49668 * 111.29549 * 301.58959 * 7 6 4 9 9 C 1.53557 * 106.13732 * 212.35612 * 8 7 6 10 10 H 1.09001 * 111.73211 * 242.30815 * 9 8 7 11 11 C 1.53883 * 110.01532 * 117.58177 * 9 8 7 12 12 C 1.54036 * 103.86474 * 220.02804 * 11 9 8 13 13 N 1.46723 * 106.53371 * 28.03008 * 12 11 9 14 14 C 1.34778 * 125.24521 * 160.78541 * 13 12 11 15 15 O 1.21278 * 120.00202 * 180.02562 * 14 13 12 16 16 C 1.50705 * 119.99663 * 0.03139 * 14 13 12 17 17 S 1.81003 * 109.46752 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99594 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00358 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99860 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 60.00240 * 22 20 18 24 24 H 1.48498 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47170 * 300.00151 * 22 20 18 26 26 C 1.46778 * 109.51519 * 341.05906 * 13 12 11 27 27 H 1.09003 * 112.20365 * 238.19348 * 26 13 12 28 28 C 1.48331 * 110.99694 * 183.59041 * 7 6 4 29 29 H 1.09000 * 109.47378 * 300.00109 * 1 2 3 30 30 H 1.09003 * 109.47275 * 60.00173 * 1 2 3 31 31 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46939 * 240.00178 * 2 1 3 33 33 H 1.08991 * 109.47472 * 120.00134 * 2 1 3 34 34 H 0.97000 * 120.00069 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.46868 * 54.03312 * 6 4 3 36 36 H 1.08996 * 109.47706 * 294.02838 * 6 4 3 37 37 H 1.09002 * 110.97784 * 92.89396 * 8 7 6 38 38 H 1.09008 * 109.71771 * 331.13501 * 8 7 6 39 39 H 1.09005 * 110.55435 * 101.43501 * 11 9 8 40 40 H 1.09001 * 110.54924 * 338.61953 * 11 9 8 41 41 H 1.09007 * 110.04533 * 268.76862 * 12 11 9 42 42 H 1.09002 * 110.09247 * 147.32355 * 12 11 9 43 43 H 1.08998 * 109.47088 * 299.99663 * 16 14 13 44 44 H 1.08998 * 109.47024 * 60.00268 * 16 14 13 45 45 H 0.97004 * 119.99896 * 179.97438 * 21 20 18 46 46 H 1.08992 * 110.53200 * 40.44859 * 28 7 6 47 47 H 1.08999 * 110.64926 * 277.74133 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8456 3.0484 -0.0011 7 7 5.3077 3.0509 0.1425 8 6 5.7312 2.3634 1.4027 9 6 7.0062 3.0793 1.8716 10 1 7.8642 2.4071 1.8866 11 6 6.7691 3.7317 3.2450 12 6 7.4950 5.0863 3.1404 13 7 7.4794 5.4599 1.7216 14 6 7.6706 6.7054 1.2432 15 8 7.6372 6.9076 0.0479 16 6 7.9261 7.8466 2.1937 17 16 8.1416 9.3781 1.2533 18 6 8.4162 10.5118 2.5739 19 1 8.4134 10.1618 3.5955 20 6 8.6372 11.8547 2.3010 21 7 8.6412 12.2813 1.0558 22 14 8.9290 13.0565 3.7009 23 1 10.1331 12.6429 4.4655 24 1 9.1369 14.4191 3.1483 25 1 7.7486 13.0630 4.6019 26 6 7.2169 4.2696 0.9039 27 1 8.0136 4.0802 0.1845 28 6 5.8305 4.4361 0.2324 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3880 2.1185 -0.0004 35 1 3.3979 3.5923 0.8307 36 1 3.5720 3.5302 -0.9397 37 1 5.9415 1.3095 1.2205 38 1 4.9499 2.4626 2.1563 39 1 7.2054 3.1241 4.0378 40 1 5.7035 3.8812 3.4187 41 1 8.5230 4.9871 3.4892 42 1 6.9714 5.8383 3.7306 43 1 7.0786 7.9520 2.8710 44 1 8.8289 7.6444 2.7699 45 1 8.7953 13.2199 0.8651 46 1 5.1776 5.0517 0.8511 47 1 5.9368 4.8721 -0.7609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186917363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:54 Heat of formation + Delta-G solvation = -55.524021 kcal Electronic energy + Delta-G solvation = -27349.441961 eV Core-core repulsion = 23465.565866 eV Total energy + Delta-G solvation = -3883.876095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -40.85797 -39.84382 -38.09975 -36.02502 -35.38133 -32.44659 -32.36887 -31.38535 -30.45653 -29.18017 -27.37560 -26.44092 -25.46716 -23.33826 -22.99626 -21.67339 -20.69374 -20.43839 -19.16208 -17.78011 -17.20946 -16.86364 -16.61596 -16.16268 -16.13502 -15.30268 -15.22091 -14.82205 -14.75742 -14.61730 -14.22206 -13.97819 -13.71805 -13.54771 -13.14862 -12.99584 -12.90297 -12.59102 -12.51518 -12.36495 -12.32018 -12.17574 -11.99058 -11.77693 -11.64988 -11.19065 -11.05026 -11.04830 -10.95506 -10.85899 -10.76262 -10.02530 -9.83040 -9.46826 -9.40814 -9.06795 -8.68777 -8.44665 -8.24655 -6.51140 -6.22322 -3.93097 2.35120 2.67039 2.90798 3.04978 3.22506 3.24720 3.28231 3.57127 3.78080 4.16664 4.20164 4.34880 4.38211 4.42441 4.59698 4.60754 4.84090 4.85789 4.92154 4.98675 5.06857 5.11091 5.12650 5.14782 5.23422 5.32959 5.36377 5.42769 5.51552 5.53773 5.55493 5.59028 5.64873 5.79484 5.87190 5.94580 5.99320 6.01345 6.08263 6.12637 6.37757 6.60171 6.66335 7.13072 7.58253 7.67007 7.92414 8.34090 8.55387 9.22724 10.85002 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002043 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.474794 B =13702.777349 C =14123.914969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.513 3.487 5 O -0.520 6.520 6 C 0.029 3.971 7 N -0.501 5.501 8 C 0.053 3.947 9 C -0.108 4.108 10 H 0.098 0.902 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.621 5.621 14 C 0.548 3.452 15 O -0.511 6.511 16 C -0.147 4.147 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.145 3.855 27 H 0.098 0.902 28 C 0.033 3.967 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.050 0.950 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -24.349 3.423 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.391 5.391 4 C 0.299 3.701 5 O -0.395 6.395 6 C -0.103 4.103 7 N -0.226 5.226 8 C -0.074 4.074 9 C -0.128 4.128 10 H 0.116 0.884 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.358 5.358 14 C 0.336 3.664 15 O -0.384 6.384 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.041 3.959 27 H 0.115 0.885 28 C -0.095 4.095 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.404 -24.750 1.030 28.166 hybrid contribution -0.566 1.358 3.062 3.397 sum -13.970 -23.393 4.092 27.553 Atomic orbital electron populations 1.22010 0.94412 1.03290 1.02595 1.21271 0.94200 0.82952 1.02397 1.46075 1.07201 1.09006 1.76856 1.20580 0.82027 0.91543 0.75962 1.90701 1.54974 1.46108 1.47720 1.22176 0.90516 0.93810 1.03803 1.64818 1.07947 1.13809 1.36053 1.23204 0.94619 1.00087 0.89519 1.22635 0.99243 0.96403 0.94483 0.88409 1.22552 1.01116 0.95613 0.97087 1.21982 1.00785 0.96424 0.82919 1.48394 1.73402 1.06973 1.07051 1.20040 0.75486 0.81570 0.89277 1.90711 1.49083 1.82637 1.16015 1.23519 1.04417 0.99571 1.02251 1.85393 1.93392 0.94056 1.10410 1.22819 1.56908 0.94902 0.93820 0.91010 1.24987 0.94669 0.97451 0.96432 1.70006 1.46068 1.16190 1.17969 0.86230 0.78873 0.79317 0.81108 1.19927 1.20792 1.19966 1.22194 0.96620 0.84035 0.93068 0.88450 1.23582 0.95120 0.88456 1.02359 0.91958 0.91889 0.90764 0.91486 0.91598 0.76575 0.91936 0.87339 0.88483 0.93888 0.89686 0.90916 0.91386 0.90546 0.89425 0.89300 0.92116 0.93154 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.03 37.16 0.37 -0.18 16 2 C 0.12 0.69 6.39 -4.04 -0.03 0.66 16 3 N -0.74 -4.78 5.56 -60.30 -0.33 -5.12 16 4 C 0.51 4.97 7.46 -10.98 -0.08 4.88 16 5 O -0.52 -6.97 14.49 5.56 0.08 -6.89 16 6 C 0.03 0.26 5.34 -4.97 -0.03 0.23 16 7 N -0.50 -5.74 5.13 -230.77 -1.18 -6.93 16 8 C 0.05 0.55 5.11 -1.99 -0.01 0.54 16 9 C -0.11 -1.06 3.81 -88.90 -0.34 -1.40 16 10 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.13 -1.06 6.47 -25.73 -0.17 -1.23 16 12 C 0.10 1.11 6.59 -3.38 -0.02 1.08 16 13 N -0.62 -8.99 2.92 -162.82 -0.48 -9.47 16 14 C 0.55 10.47 7.64 -10.98 -0.08 10.39 16 15 O -0.51 -11.63 15.84 5.56 0.09 -11.54 16 16 C -0.15 -3.00 5.18 36.01 0.19 -2.82 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 C 0.15 1.88 3.89 -65.78 -0.26 1.63 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 28 C 0.03 0.43 5.62 -2.00 -0.01 0.42 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.40 1.55 8.47 -40.82 -0.35 1.20 16 35 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.12 7.01 -51.93 -0.36 0.76 16 38 H 0.04 0.41 6.90 -51.92 -0.36 0.05 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.60 7.35 -51.93 -0.38 0.22 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.08 0.81 7.57 -51.93 -0.39 0.41 16 43 H 0.09 1.66 7.85 -51.92 -0.41 1.25 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -36.15 391.95 -10.38 -46.53 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.69 Total: -0.91 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.27 Total: 1.28 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.26 Total: -46.86 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.17 Total: -18.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.15 -10.38 -46.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.993 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds