Wall clock time and date at job start Sat Apr 11 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47084 * 2 1 4 4 C 1.34777 * 120.00118 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00006 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99971 * 179.97438 * 4 3 2 7 7 N 1.46906 * 109.46955 * 174.02638 * 6 4 3 8 8 C 1.49668 * 111.29549 * 301.58959 * 7 6 4 9 9 C 1.53557 * 106.13732 * 212.35612 * 8 7 6 10 10 H 1.09001 * 111.73211 * 242.30815 * 9 8 7 11 11 C 1.53883 * 110.01532 * 117.58177 * 9 8 7 12 12 C 1.54036 * 103.86474 * 220.02804 * 11 9 8 13 13 N 1.46723 * 106.53371 * 28.03008 * 12 11 9 14 14 C 1.34778 * 125.24521 * 160.78541 * 13 12 11 15 15 O 1.21278 * 120.00202 * 180.02562 * 14 13 12 16 16 C 1.50705 * 119.99663 * 0.03139 * 14 13 12 17 17 S 1.81003 * 109.46752 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99594 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00358 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99693 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99860 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47149 * 60.00240 * 22 20 18 24 24 H 1.48498 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47170 * 300.00151 * 22 20 18 26 26 C 1.46778 * 109.51519 * 341.05906 * 13 12 11 27 27 H 1.09003 * 112.20365 * 238.19348 * 26 13 12 28 28 C 1.48331 * 110.99694 * 183.59041 * 7 6 4 29 29 H 1.09000 * 109.47378 * 300.00109 * 1 2 3 30 30 H 1.09003 * 109.47275 * 60.00173 * 1 2 3 31 31 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46939 * 240.00178 * 2 1 3 33 33 H 1.08991 * 109.47472 * 120.00134 * 2 1 3 34 34 H 0.97000 * 120.00069 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.46868 * 54.03312 * 6 4 3 36 36 H 1.08996 * 109.47706 * 294.02838 * 6 4 3 37 37 H 1.09002 * 110.97784 * 92.89396 * 8 7 6 38 38 H 1.09008 * 109.71771 * 331.13501 * 8 7 6 39 39 H 1.09005 * 110.55435 * 101.43501 * 11 9 8 40 40 H 1.09001 * 110.54924 * 338.61953 * 11 9 8 41 41 H 1.09007 * 110.04533 * 268.76862 * 12 11 9 42 42 H 1.09002 * 110.09247 * 147.32355 * 12 11 9 43 43 H 1.08998 * 109.47088 * 299.99663 * 16 14 13 44 44 H 1.08998 * 109.47024 * 60.00268 * 16 14 13 45 45 H 0.97004 * 119.99896 * 179.97438 * 21 20 18 46 46 H 1.08992 * 110.53200 * 40.44859 * 28 7 6 47 47 H 1.08999 * 110.64926 * 277.74133 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8456 3.0484 -0.0011 7 7 5.3077 3.0509 0.1425 8 6 5.7312 2.3634 1.4027 9 6 7.0062 3.0793 1.8716 10 1 7.8642 2.4071 1.8866 11 6 6.7691 3.7317 3.2450 12 6 7.4950 5.0863 3.1404 13 7 7.4794 5.4599 1.7216 14 6 7.6706 6.7054 1.2432 15 8 7.6372 6.9076 0.0479 16 6 7.9261 7.8466 2.1937 17 16 8.1416 9.3781 1.2533 18 6 8.4162 10.5118 2.5739 19 1 8.4134 10.1618 3.5955 20 6 8.6372 11.8547 2.3010 21 7 8.6412 12.2813 1.0558 22 14 8.9290 13.0565 3.7009 23 1 10.1331 12.6429 4.4655 24 1 9.1369 14.4191 3.1483 25 1 7.7486 13.0630 4.6019 26 6 7.2169 4.2696 0.9039 27 1 8.0136 4.0802 0.1845 28 6 5.8305 4.4361 0.2324 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3880 2.1185 -0.0004 35 1 3.3979 3.5923 0.8307 36 1 3.5720 3.5302 -0.9397 37 1 5.9415 1.3095 1.2205 38 1 4.9499 2.4626 2.1563 39 1 7.2054 3.1241 4.0378 40 1 5.7035 3.8812 3.4187 41 1 8.5230 4.9871 3.4892 42 1 6.9714 5.8383 3.7306 43 1 7.0786 7.9520 2.8710 44 1 8.8289 7.6444 2.7699 45 1 8.7953 13.2199 0.8651 46 1 5.1776 5.0517 0.8511 47 1 5.9368 4.8721 -0.7609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186917363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:52 Heat of formation + Delta-G solvation = -82.847655 kcal Electronic energy + Delta-G solvation = -27350.626803 eV Core-core repulsion = 23465.565866 eV Total energy + Delta-G solvation = -3885.060937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.86496 -40.72416 -39.37537 -36.93856 -36.13761 -34.58703 -33.42779 -32.09909 -31.42104 -30.37137 -28.42607 -27.67597 -27.21070 -24.08923 -23.82599 -22.48717 -21.47066 -21.39482 -20.43245 -19.60818 -18.22719 -17.92726 -17.58638 -17.01260 -16.88119 -16.84138 -16.59135 -16.30377 -15.97497 -15.50859 -15.33844 -15.03074 -14.83570 -14.58989 -14.41333 -14.03795 -13.85608 -13.66628 -13.47275 -13.32227 -13.23922 -13.13547 -12.97872 -12.86416 -12.69059 -12.62660 -12.55864 -12.33144 -11.98681 -11.89902 -11.74598 -11.60516 -11.12824 -10.96733 -10.83676 -10.28345 -10.10237 -9.78317 -9.42242 -8.67732 -8.34414 -6.13041 1.23040 1.43999 1.44409 1.54615 1.54917 1.60363 1.96536 2.15774 2.27438 2.92325 2.99588 3.17867 3.36089 3.49523 3.59068 3.77453 3.90073 4.04691 4.09910 4.15787 4.17943 4.21973 4.25603 4.29415 4.33801 4.40718 4.46159 4.52024 4.54462 4.62212 4.74801 4.86315 4.91961 4.94898 5.03490 5.05687 5.06369 5.24355 5.26308 5.35590 5.41394 5.48203 5.71901 5.79013 6.19486 6.38181 6.55351 7.06508 7.11038 7.25233 8.74501 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002043 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.474794 B =13702.777349 C =14123.914969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.722 5.722 4 C 0.513 3.487 5 O -0.563 6.563 6 C 0.028 3.972 7 N -0.518 5.518 8 C 0.060 3.940 9 C -0.097 4.097 10 H 0.111 0.889 11 C -0.113 4.113 12 C 0.091 3.909 13 N -0.609 5.609 14 C 0.547 3.453 15 O -0.559 6.559 16 C -0.120 4.120 17 S -0.148 6.148 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.135 3.865 27 H 0.080 0.920 28 C 0.044 3.956 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.048 0.952 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 -25.395 6.530 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.376 5.376 4 C 0.299 3.701 5 O -0.441 6.441 6 C -0.104 4.104 7 N -0.243 5.243 8 C -0.067 4.067 9 C -0.117 4.117 10 H 0.129 0.871 11 C -0.151 4.151 12 C -0.031 4.031 13 N -0.344 5.344 14 C 0.335 3.665 15 O -0.437 6.437 16 C -0.271 4.271 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.186 1.186 26 C 0.031 3.969 27 H 0.098 0.902 28 C -0.085 4.085 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.640 -25.839 4.177 29.991 hybrid contribution -0.258 1.520 2.061 2.574 sum -14.899 -24.320 6.238 29.195 Atomic orbital electron populations 1.21958 0.92048 1.04132 1.03266 1.21339 0.96043 0.82284 1.01383 1.46001 1.06482 1.09966 1.75180 1.20683 0.82683 0.91227 0.75481 1.90687 1.56199 1.47173 1.50034 1.22246 0.89190 0.93839 1.05082 1.64729 1.09758 1.12677 1.37128 1.23135 0.95093 0.99227 0.89236 1.22624 0.99597 0.95000 0.94441 0.87060 1.22560 1.01569 0.94143 0.96783 1.22357 1.02338 0.98065 0.80354 1.48299 1.71127 1.05756 1.09240 1.19788 0.75672 0.82760 0.88297 1.90694 1.51667 1.83635 1.17734 1.23311 1.05927 0.96261 1.01567 1.85589 1.93799 0.98831 1.13895 1.23161 1.56859 0.95414 0.94053 0.89898 1.26130 0.94011 0.99586 0.99376 1.70177 1.47217 1.16710 1.20604 0.85008 0.79401 0.76277 0.77335 1.18678 1.20420 1.18555 1.22323 0.96175 0.84627 0.93752 0.90174 1.23325 0.95171 0.89222 1.00763 0.91114 0.91308 0.89883 0.92806 0.92410 0.74833 0.89850 0.86567 0.89649 0.92597 0.86578 0.90171 0.89915 0.89734 0.87489 0.87660 0.91983 0.93397 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.03 71.98 0.72 -0.01 16 2 C 0.11 1.23 6.39 86.38 0.55 1.78 16 3 N -0.72 -8.34 5.56 -463.07 -2.57 -10.91 16 4 C 0.51 9.47 7.46 87.66 0.65 10.12 16 5 O -0.56 -14.98 14.49 -3.04 -0.04 -15.02 16 6 C 0.03 0.47 5.34 85.56 0.46 0.92 16 7 N -0.52 -11.60 5.13 -884.03 -4.53 -16.13 16 8 C 0.06 1.14 5.11 85.95 0.44 1.58 16 9 C -0.10 -1.69 3.81 -9.68 -0.04 -1.73 16 10 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 11 C -0.11 -1.47 6.47 31.24 0.20 -1.27 16 12 C 0.09 1.68 6.59 86.69 0.57 2.25 16 13 N -0.61 -17.01 2.92 -787.43 -2.30 -19.31 16 14 C 0.55 21.03 7.64 87.66 0.67 21.70 16 15 O -0.56 -26.56 15.84 -3.02 -0.05 -26.61 16 16 C -0.12 -4.83 5.18 71.24 0.37 -4.46 16 17 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 18 C -0.55 -31.16 9.50 67.96 0.65 -30.51 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 22 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 C 0.14 3.45 3.89 46.24 0.18 3.63 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 C 0.04 1.14 5.62 86.69 0.49 1.62 16 29 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.41 2.33 8.47 -92.71 -0.79 1.55 16 35 H 0.08 1.07 8.02 -2.39 -0.02 1.05 16 36 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.88 7.01 -2.39 -0.02 1.87 16 38 H 0.06 0.92 6.90 -2.38 -0.02 0.90 16 39 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 0.99 7.35 -2.39 -0.02 0.97 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 1.48 7.57 -2.39 -0.02 1.47 16 43 H 0.11 3.88 7.85 -2.40 -0.02 3.86 16 44 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -82.23 391.95 -1.78 -84.01 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.18 Total: 16.84 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.38 Total: 6.88 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -9.12 Total: -101.97 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -0.09 Total: -41.63 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -82.23 -1.78 -84.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.165 kcal (2) G-P(sol) polarization free energy of solvation -82.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds