Wall clock time and date at job start Sat Apr 11 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81394 * 102.99955 * 2 1 4 4 H 1.09003 * 109.47435 * 305.00017 * 3 2 1 5 5 C 1.53000 * 109.47312 * 65.00083 * 3 2 1 6 6 C 1.50695 * 109.47222 * 184.99940 * 3 2 1 7 7 O 1.21289 * 120.00101 * 339.99951 * 6 3 2 8 8 N 1.34779 * 120.00418 * 160.27223 * 6 3 2 9 9 C 1.47360 * 125.57018 * 359.42277 * 8 6 3 10 10 C 1.55098 * 104.65823 * 154.72329 * 9 8 6 11 11 C 1.54933 * 101.78997 * 37.42593 * 10 9 8 12 12 H 1.08995 * 113.37285 * 87.69093 * 11 10 9 13 13 C 1.53783 * 108.81003 * 214.02604 * 11 10 9 14 14 N 1.47857 * 107.12715 * 113.29139 * 13 11 10 15 15 C 1.46900 * 110.99589 * 212.89896 * 14 13 11 16 16 C 1.50697 * 109.47137 * 300.90737 * 15 14 13 17 17 O 1.21284 * 120.00094 * 354.02447 * 16 15 14 18 18 N 1.34779 * 119.99781 * 174.02650 * 16 15 14 19 19 C 1.37093 * 119.99737 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00002 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99890 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47252 * 60.00039 * 23 21 19 25 25 H 1.48505 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47122 * 300.00000 * 23 21 19 27 27 C 1.48419 * 105.77324 * 333.37941 * 14 13 11 28 28 C 1.46850 * 125.57746 * 179.72279 * 8 6 3 29 29 H 1.08995 * 112.02146 * 58.24258 * 28 8 6 30 30 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47195 * 300.00280 * 1 2 3 32 32 H 1.09004 * 109.47251 * 60.00117 * 1 2 3 33 33 H 1.09005 * 109.47403 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46818 * 299.99860 * 5 3 2 35 35 H 1.08994 * 109.47158 * 59.99656 * 5 3 2 36 36 H 1.08999 * 110.37456 * 273.65073 * 9 8 6 37 37 H 1.09002 * 110.37952 * 36.00101 * 9 8 6 38 38 H 1.08998 * 111.15989 * 279.23488 * 10 9 8 39 39 H 1.09000 * 110.85957 * 155.48348 * 10 9 8 40 40 H 1.08992 * 109.91158 * 353.91161 * 13 11 10 41 41 H 1.09009 * 110.05512 * 232.73891 * 13 11 10 42 42 H 1.09006 * 109.47298 * 60.90932 * 15 14 13 43 43 H 1.08999 * 109.46792 * 180.90673 * 15 14 13 44 44 H 0.97002 * 120.00439 * 0.02562 * 18 16 15 45 45 H 0.96990 * 120.00018 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.58959 * 280.54735 * 27 14 13 47 47 H 1.08998 * 110.71692 * 157.69125 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7141 1.9385 -0.1238 7 8 4.4552 1.0199 0.1556 8 7 4.2255 3.1141 -0.5398 9 6 3.4425 4.3045 -0.9156 10 6 4.4036 5.4981 -0.6765 11 6 5.7622 4.9060 -1.1281 12 1 5.9543 5.0283 -2.1940 13 6 6.8775 5.4983 -0.2506 14 7 7.4278 4.3913 0.5604 15 6 7.8678 4.8716 1.8771 16 6 8.9217 5.9338 1.6978 17 8 9.3500 6.1824 0.5907 18 7 9.3884 6.6074 2.7679 19 6 10.3475 7.5733 2.6049 20 1 10.7288 7.7947 1.6191 21 6 10.8282 8.2682 3.7081 22 7 10.3639 7.9991 4.9076 23 14 12.1346 9.5848 3.4858 24 1 11.6171 10.6493 2.5889 25 1 12.4744 10.1729 4.8065 26 1 13.3505 8.9794 2.8854 27 6 6.3277 3.4041 0.6948 28 6 5.6538 3.4162 -0.6984 29 1 6.1408 2.7344 -1.3956 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.9876 3.4638 1.3072 34 1 0.6635 2.2778 1.3969 35 1 2.2354 1.9149 2.1491 36 1 3.1521 4.2520 -1.9649 37 1 2.5608 4.3948 -0.2810 38 1 4.4307 5.7765 0.3770 39 1 4.1250 6.3508 -1.2957 40 1 6.4667 6.2682 0.4024 41 1 7.6609 5.9235 -0.8782 42 1 7.0169 5.2910 2.4139 43 1 8.2830 4.0403 2.4469 44 1 9.0461 6.4083 3.6535 45 1 10.6997 8.4839 5.6776 46 1 5.6227 3.7183 1.4643 47 1 6.7236 2.4139 0.9205 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186925018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:26 Heat of formation + Delta-G solvation = -72.168232 kcal Electronic energy + Delta-G solvation = -28034.935052 eV Core-core repulsion = 24150.337210 eV Total energy + Delta-G solvation = -3884.597843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94589 -40.40660 -39.40449 -36.94380 -35.87639 -34.50124 -33.33176 -32.82620 -31.28105 -29.64940 -28.71183 -28.07910 -26.13914 -25.67937 -23.86042 -22.56241 -21.42038 -21.02461 -20.26965 -19.80437 -18.60325 -17.81193 -17.70451 -17.15452 -16.71175 -16.47117 -16.32914 -16.10930 -15.89924 -15.35797 -15.17140 -15.08844 -14.79648 -14.46749 -14.29131 -14.11334 -13.91111 -13.83435 -13.56046 -13.40262 -13.37417 -13.23486 -12.99603 -12.93622 -12.86711 -12.63359 -12.44424 -12.40735 -12.12769 -11.92261 -11.86822 -11.67812 -11.47414 -11.00039 -10.80779 -10.33018 -10.03154 -9.84042 -9.36324 -8.73362 -8.47464 -5.96475 0.44060 1.39051 1.41205 1.43814 1.52314 1.63497 1.82699 2.01464 2.27838 2.80382 3.06709 3.18957 3.33979 3.45287 3.57064 3.67417 3.79787 3.92862 4.05266 4.09153 4.21115 4.22379 4.31192 4.35579 4.36740 4.38775 4.46186 4.53013 4.55841 4.61427 4.64024 4.69958 4.84064 4.91011 4.93595 5.03578 5.09484 5.12762 5.17389 5.33325 5.39781 5.78288 5.88408 6.03019 6.37206 6.58191 6.98728 7.10791 7.53063 8.08214 8.69791 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025601 B = 0.002146 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.426847 B =13045.479858 C =13347.172440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.272 6.272 3 C -0.070 4.070 4 H 0.136 0.864 5 C -0.140 4.140 6 C 0.540 3.460 7 O -0.564 6.564 8 N -0.606 5.606 9 C 0.095 3.905 10 C -0.122 4.122 11 C -0.095 4.095 12 H 0.119 0.881 13 C 0.055 3.945 14 N -0.512 5.512 15 C 0.051 3.949 16 C 0.442 3.558 17 O -0.611 6.611 18 N -0.572 5.572 19 C -0.332 4.332 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.040 3.960 28 C 0.143 3.857 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.049 0.951 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.349 -7.983 -9.457 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.047 6.047 3 C -0.202 4.202 4 H 0.154 0.846 5 C -0.199 4.199 6 C 0.328 3.672 7 O -0.442 6.442 8 N -0.340 5.340 9 C -0.026 4.026 10 C -0.160 4.160 11 C -0.114 4.114 12 H 0.137 0.863 13 C -0.073 4.073 14 N -0.237 5.237 15 C -0.081 4.081 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.099 0.901 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.089 4.089 28 C 0.038 3.962 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.539 -9.398 -10.065 28.139 hybrid contribution -0.309 1.637 1.160 2.031 sum -24.849 -7.761 -8.904 27.513 Atomic orbital electron populations 1.23580 0.90965 1.07703 1.06429 1.87851 1.10077 1.08650 1.98092 1.23238 0.94408 0.97088 1.05418 0.84621 1.22040 1.03240 1.01473 0.93145 1.19957 0.90035 0.80952 0.76226 1.90755 1.61866 1.41093 1.50461 1.48473 1.07136 1.12849 1.65538 1.22815 0.95106 0.82015 1.02670 1.22992 0.92178 0.98247 1.02544 1.23027 0.95412 0.91775 1.01193 0.86338 1.22785 0.96098 0.92441 0.95929 1.64424 1.33778 1.12532 1.12934 1.21924 0.96916 0.97172 0.92087 1.20541 0.86521 0.85270 0.84716 1.90476 1.63233 1.70078 1.25939 1.41921 1.36596 1.33774 1.08682 1.19633 1.17048 1.14268 0.95216 0.90112 1.26075 1.00532 1.00663 0.94113 1.69671 1.44380 1.43119 0.99011 0.84970 0.77817 0.77703 0.77733 1.19433 1.19542 1.19833 1.23397 0.91833 0.96294 0.97356 1.22286 0.81198 0.97022 0.95645 0.89745 0.87090 0.88868 0.88813 0.89647 0.88635 0.92629 0.88304 0.87704 0.91265 0.86679 0.94214 0.91523 0.91482 0.88106 0.77132 0.91285 0.93307 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.45 113.37 1.19 0.23 16 2 S -0.27 -5.16 21.04 -56.49 -1.19 -6.35 16 3 C -0.07 -1.04 2.44 29.85 0.07 -0.97 16 4 H 0.14 1.18 7.66 -2.39 -0.02 1.16 16 5 C -0.14 -1.52 8.97 71.98 0.65 -0.87 16 6 C 0.54 12.46 6.83 87.66 0.60 13.06 16 7 O -0.56 -18.74 16.06 -3.06 -0.05 -18.79 16 8 N -0.61 -11.67 2.96 -782.81 -2.32 -13.99 16 9 C 0.09 0.98 6.42 86.93 0.56 1.53 16 10 C -0.12 -1.65 6.35 31.97 0.20 -1.45 16 11 C -0.09 -1.99 4.00 -9.03 -0.04 -2.02 16 12 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 13 C 0.06 1.74 4.97 86.38 0.43 2.17 16 14 N -0.51 -17.92 5.12 -888.80 -4.55 -22.47 16 15 C 0.05 1.89 5.30 85.56 0.45 2.34 16 16 C 0.44 21.52 7.40 87.66 0.65 22.17 16 17 O -0.61 -33.84 14.07 -3.04 -0.04 -33.89 16 18 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 19 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.03 13.05 21.67 0.28 -49.75 16 23 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.04 1.17 5.59 86.61 0.48 1.66 16 28 C 0.14 3.49 3.85 46.36 0.18 3.67 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.49 7.14 -2.39 -0.02 0.47 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.69 6.52 -2.38 -0.02 0.68 16 34 H 0.09 0.56 6.92 -2.38 -0.02 0.55 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.57 5.95 -2.39 -0.01 0.56 16 38 H 0.07 1.12 7.53 -2.39 -0.02 1.10 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 1.27 6.90 -2.39 -0.02 1.25 16 41 H 0.07 2.55 6.96 -2.38 -0.02 2.53 16 42 H 0.07 2.23 7.99 -2.38 -0.02 2.21 16 43 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 44 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 45 H 0.28 14.15 8.31 -92.72 -0.77 13.37 16 46 H 0.05 1.37 7.88 -2.39 -0.02 1.35 16 47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -77.18 384.31 -0.51 -77.69 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.25 Total: 30.90 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 6.70 Total: 23.11 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -8.21 Total: -117.67 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.19 Total: -6.35 kcal Total: -77.18 -0.51 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186925018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds