Wall clock time and date at job start Sat Apr 11 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 119.99918 * 2 1 4 4 O 1.21284 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00030 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46793 * 327.78196 * 5 3 2 7 7 C 1.52990 * 109.47447 * 87.78386 * 5 3 2 8 8 N 1.46904 * 109.47008 * 207.78879 * 5 3 2 9 9 C 1.46388 * 111.00095 * 163.75147 * 8 5 3 10 10 C 1.51681 * 111.36334 * 188.94080 * 9 8 5 11 11 C 1.51749 * 113.41795 * 312.64041 * 10 9 8 12 12 H 1.09000 * 113.09615 * 256.79449 * 11 10 9 13 13 C 1.54297 * 112.55321 * 124.66870 * 11 10 9 14 14 N 1.47230 * 87.55809 * 271.72674 * 13 11 10 15 15 C 1.34772 * 136.44726 * 151.79731 * 14 13 11 16 16 O 1.21278 * 120.00113 * 179.90630 * 15 14 13 17 17 C 1.50697 * 120.00104 * 359.63138 * 15 14 13 18 18 S 1.81000 * 109.47434 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00163 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99622 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00516 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99611 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47303 * 59.99881 * 23 21 19 25 25 H 1.48506 * 109.46978 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46793 * 299.99460 * 23 21 19 27 27 C 1.46600 * 87.10201 * 331.54686 * 14 13 11 28 28 H 1.09002 * 112.83013 * 275.58525 * 27 14 13 29 29 C 1.46945 * 110.99355 * 287.05846 * 8 5 3 30 30 H 1.09003 * 109.47648 * 59.99853 * 1 2 3 31 31 H 1.09008 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46989 * 299.99646 * 1 2 3 33 33 H 0.96998 * 119.99934 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47161 * 300.00258 * 7 5 3 35 35 H 1.09001 * 109.47279 * 60.00108 * 7 5 3 36 36 H 1.09006 * 109.47532 * 180.02562 * 7 5 3 37 37 H 1.09001 * 109.10230 * 309.42372 * 9 8 5 38 38 H 1.09005 * 109.10581 * 68.51932 * 9 8 5 39 39 H 1.08998 * 108.69535 * 73.65898 * 10 9 8 40 40 H 1.09002 * 108.69264 * 191.62112 * 10 9 8 41 41 H 1.08998 * 113.50727 * 157.08415 * 13 11 10 42 42 H 1.08999 * 113.62663 * 26.39565 * 13 11 10 43 43 H 1.09002 * 109.47617 * 300.00308 * 17 15 14 44 44 H 1.09001 * 109.46982 * 59.99953 * 17 15 14 45 45 H 0.96998 * 120.00266 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.49130 * 52.08491 * 29 8 5 47 47 H 1.08998 * 109.49231 * 291.99706 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0094 0.2976 0.5470 7 6 4.1553 1.1118 -1.4421 8 7 4.1357 2.3924 0.6452 9 6 5.5478 2.2647 1.0097 10 6 6.0046 3.4296 1.8670 11 6 5.5849 4.7817 1.3205 12 1 6.3992 5.3169 0.8319 13 6 4.7881 5.6134 2.3471 14 7 3.5714 4.9577 1.8397 15 6 2.3609 4.6290 2.3327 16 8 1.5483 4.0732 1.6245 17 6 2.0194 4.9466 3.7657 18 16 0.3359 4.3862 4.1232 19 6 0.2046 4.8700 5.8124 20 1 1.0356 5.3571 6.3007 21 6 -0.9664 4.6239 6.5157 22 7 -1.9791 4.0297 5.9207 23 14 -1.1053 5.1361 8.3068 24 1 -0.9227 6.6056 8.4170 25 1 -2.4458 4.7630 8.8257 26 1 -0.0578 4.4460 9.1016 27 6 4.2663 4.8288 0.5553 28 1 4.1850 5.7240 -0.0613 29 6 3.9314 3.5618 -0.2208 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8400 -0.0004 34 1 3.7918 0.2027 -1.9212 35 1 3.7918 1.9813 -1.9897 36 1 5.2454 1.1113 -1.4425 37 1 5.6908 1.3368 1.5633 38 1 6.1494 2.2342 0.1012 39 1 5.5874 3.3122 2.8670 40 1 7.0919 3.4044 1.9398 41 1 4.8169 6.6858 2.1541 42 1 5.0168 5.3641 3.3832 43 1 2.7203 4.4379 4.4276 44 1 2.0852 6.0229 3.9250 45 1 -2.7976 3.8581 6.4121 46 1 2.8911 3.5976 -0.5441 47 1 4.5814 3.4868 -1.0925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221291416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:47 Heat of formation + Delta-G solvation = -5.867500 kcal Electronic energy + Delta-G solvation = -29315.465882 eV Core-core repulsion = 25433.743055 eV Total energy + Delta-G solvation = -3881.722827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.10278 -39.48342 -37.53492 -36.49434 -34.23429 -32.61610 -32.31867 -30.63553 -30.07553 -27.85439 -26.90783 -26.67482 -25.35515 -23.86428 -23.46776 -21.70026 -20.12161 -19.87192 -17.86071 -17.46916 -16.98446 -16.84072 -16.03131 -15.52144 -15.27387 -15.08022 -14.79227 -14.71151 -14.35557 -14.31726 -13.81924 -13.79702 -13.48270 -13.28466 -13.03886 -12.64087 -12.56315 -12.44808 -12.31201 -12.09851 -12.01913 -11.89757 -11.57416 -11.48707 -11.19023 -11.02880 -10.95583 -10.90944 -10.67427 -10.61676 -10.31348 -9.68312 -9.18148 -8.95426 -8.83158 -8.71559 -8.16727 -8.07022 -8.03272 -6.33243 -6.10450 -3.78283 2.97454 3.09903 3.29549 3.31659 3.32907 3.35885 3.60648 3.80057 3.95971 4.23182 4.32370 4.62353 4.72029 4.81655 4.93269 4.98723 5.15110 5.17754 5.19152 5.23849 5.28205 5.32072 5.36954 5.40873 5.47363 5.52724 5.58031 5.66875 5.69521 5.75695 5.76978 5.80952 5.86625 6.02039 6.13048 6.14087 6.22688 6.27575 6.36924 6.48353 6.69193 7.02667 7.17514 7.69505 7.73265 8.38827 8.46014 8.64091 9.14500 9.34364 10.96795 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003869 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.767333 B = 7235.908854 C = 8908.852816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.743 5.743 3 C 0.502 3.498 4 O -0.468 6.468 5 C 0.070 3.930 6 H 0.094 0.906 7 C -0.177 4.177 8 N -0.500 5.500 9 C 0.060 3.940 10 C -0.091 4.091 11 C -0.124 4.124 12 H 0.089 0.911 13 C 0.102 3.898 14 N -0.633 5.633 15 C 0.554 3.446 16 O -0.469 6.469 17 C -0.140 4.140 18 S -0.056 6.056 19 C -0.534 4.534 20 H 0.069 0.931 21 C 0.074 3.926 22 N -0.869 5.869 23 Si 0.916 3.084 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.275 1.275 27 C 0.146 3.854 28 H 0.083 0.917 29 C 0.043 3.957 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.393 0.607 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.267 0.733 46 H 0.117 0.883 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.047 -6.337 -14.666 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.398 5.398 3 C 0.285 3.715 4 O -0.338 6.338 5 C -0.042 4.042 6 H 0.112 0.888 7 C -0.237 4.237 8 N -0.224 5.224 9 C -0.068 4.068 10 C -0.129 4.129 11 C -0.143 4.143 12 H 0.107 0.893 13 C -0.022 4.022 14 N -0.374 5.374 15 C 0.342 3.658 16 O -0.339 6.339 17 C -0.291 4.291 18 S 0.171 5.829 19 C -0.682 4.682 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.742 3.258 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 C 0.042 3.958 28 H 0.100 0.900 29 C -0.085 4.085 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.135 0.865 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.615 -6.416 -15.153 23.384 hybrid contribution 1.636 0.480 1.460 2.244 sum 18.251 -5.936 -13.693 23.576 Atomic orbital electron populations 1.21465 0.79548 1.01437 1.02772 1.45734 1.07621 1.08260 1.78144 1.20414 0.89365 0.84221 0.77474 1.90896 1.69088 1.29664 1.44133 1.21538 0.93292 0.94668 0.94713 0.88799 1.22355 1.01571 1.03189 0.96546 1.61611 1.16984 1.01250 1.42532 1.21681 0.88068 0.98804 0.98226 1.20731 0.99805 0.92094 1.00241 1.22599 0.96366 0.97164 0.98216 0.89263 1.23183 0.83344 0.96819 0.98869 1.49401 1.13554 1.61151 1.13268 1.19663 0.78899 0.78526 0.88688 1.90868 1.45394 1.38272 1.59378 1.23442 1.06368 1.03978 0.95326 1.85391 1.06283 1.78209 1.13035 1.22867 1.03141 1.45210 0.97026 0.91273 1.24956 0.94786 0.94889 0.98882 1.70020 1.04059 1.39561 1.36800 0.86277 0.77384 0.79017 0.83117 1.20007 1.20865 1.20032 1.22029 0.88555 0.97260 0.87987 0.89955 1.22376 1.04481 0.88917 0.92693 0.92738 0.91390 0.91524 0.77502 0.91755 0.91375 0.91717 0.90921 0.95272 0.91014 0.91420 0.90530 0.90669 0.90205 0.90306 0.92311 0.86534 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.70 59.85 0.64 1.80 16 2 N -0.74 -9.03 5.71 -67.07 -0.38 -9.41 16 3 C 0.50 7.62 6.99 -10.99 -0.08 7.54 16 4 O -0.47 -9.54 11.43 -16.86 -0.19 -9.73 16 5 C 0.07 0.81 2.69 -68.87 -0.19 0.62 16 6 H 0.09 0.90 7.79 -51.93 -0.40 0.50 16 7 C -0.18 -1.55 8.28 37.15 0.31 -1.24 16 8 N -0.50 -6.58 4.32 -229.71 -0.99 -7.57 16 9 C 0.06 0.60 5.13 -4.77 -0.02 0.57 16 10 C -0.09 -0.87 5.74 -28.03 -0.16 -1.03 16 11 C -0.12 -1.20 4.57 -90.82 -0.41 -1.61 16 12 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 13 C 0.10 1.18 7.84 -10.75 -0.08 1.10 16 14 N -0.63 -10.26 3.30 -184.94 -0.61 -10.87 16 15 C 0.55 11.93 8.02 -10.99 -0.09 11.84 16 16 O -0.47 -11.79 13.03 -16.85 -0.22 -12.01 16 17 C -0.14 -3.22 6.01 36.00 0.22 -3.00 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -16.02 9.50 30.94 0.29 -15.73 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.19 5.49 -17.43 -0.10 2.09 16 22 N -0.87 -27.14 13.22 55.49 0.73 -26.41 16 23 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 1.88 4.24 -76.25 -0.32 1.56 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 C 0.04 0.58 3.47 -4.15 -0.01 0.56 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.39 3.27 8.83 -40.82 -0.36 2.91 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 36 H 0.06 0.47 7.13 -51.93 -0.37 0.10 16 37 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 38 H 0.03 0.25 7.12 -51.93 -0.37 -0.12 16 39 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 43 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.08 1.72 8.14 -51.91 -0.42 1.29 16 45 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.12 2.05 5.25 -51.93 -0.27 1.78 16 47 H 0.04 0.40 6.67 -51.93 -0.35 0.06 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -39.06 381.09 -10.60 -49.67 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.43 Total: 2.17 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.01 Total: 5.09 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.25 Total: -54.26 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.41 Total: -21.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.06 -10.60 -49.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.798 kcal (2) G-P(sol) polarization free energy of solvation -39.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds