Wall clock time and date at job start Sat Apr 11 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 119.99918 * 2 1 4 4 O 1.21284 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00030 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46793 * 327.78196 * 5 3 2 7 7 C 1.52990 * 109.47447 * 87.78386 * 5 3 2 8 8 N 1.46904 * 109.47008 * 207.78879 * 5 3 2 9 9 C 1.46388 * 111.00095 * 163.75147 * 8 5 3 10 10 C 1.51681 * 111.36334 * 188.94080 * 9 8 5 11 11 C 1.51749 * 113.41795 * 312.64041 * 10 9 8 12 12 H 1.09000 * 113.09615 * 256.79449 * 11 10 9 13 13 C 1.54297 * 112.55321 * 124.66870 * 11 10 9 14 14 N 1.47230 * 87.55809 * 271.72674 * 13 11 10 15 15 C 1.34772 * 136.44726 * 151.79731 * 14 13 11 16 16 O 1.21278 * 120.00113 * 179.90630 * 15 14 13 17 17 C 1.50697 * 120.00104 * 359.63138 * 15 14 13 18 18 S 1.81000 * 109.47434 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00163 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99708 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99622 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00516 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99611 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47303 * 59.99881 * 23 21 19 25 25 H 1.48506 * 109.46978 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46793 * 299.99460 * 23 21 19 27 27 C 1.46600 * 87.10201 * 331.54686 * 14 13 11 28 28 H 1.09002 * 112.83013 * 275.58525 * 27 14 13 29 29 C 1.46945 * 110.99355 * 287.05846 * 8 5 3 30 30 H 1.09003 * 109.47648 * 59.99853 * 1 2 3 31 31 H 1.09008 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46989 * 299.99646 * 1 2 3 33 33 H 0.96998 * 119.99934 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47161 * 300.00258 * 7 5 3 35 35 H 1.09001 * 109.47279 * 60.00108 * 7 5 3 36 36 H 1.09006 * 109.47532 * 180.02562 * 7 5 3 37 37 H 1.09001 * 109.10230 * 309.42372 * 9 8 5 38 38 H 1.09005 * 109.10581 * 68.51932 * 9 8 5 39 39 H 1.08998 * 108.69535 * 73.65898 * 10 9 8 40 40 H 1.09002 * 108.69264 * 191.62112 * 10 9 8 41 41 H 1.08998 * 113.50727 * 157.08415 * 13 11 10 42 42 H 1.08999 * 113.62663 * 26.39565 * 13 11 10 43 43 H 1.09002 * 109.47617 * 300.00308 * 17 15 14 44 44 H 1.09001 * 109.46982 * 59.99953 * 17 15 14 45 45 H 0.96998 * 120.00266 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.49130 * 52.08491 * 29 8 5 47 47 H 1.08998 * 109.49231 * 291.99706 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0094 0.2976 0.5470 7 6 4.1553 1.1118 -1.4421 8 7 4.1357 2.3924 0.6452 9 6 5.5478 2.2647 1.0097 10 6 6.0046 3.4296 1.8670 11 6 5.5849 4.7817 1.3205 12 1 6.3992 5.3169 0.8319 13 6 4.7881 5.6134 2.3471 14 7 3.5714 4.9577 1.8397 15 6 2.3609 4.6290 2.3327 16 8 1.5483 4.0732 1.6245 17 6 2.0194 4.9466 3.7657 18 16 0.3359 4.3862 4.1232 19 6 0.2046 4.8700 5.8124 20 1 1.0356 5.3571 6.3007 21 6 -0.9664 4.6239 6.5157 22 7 -1.9791 4.0297 5.9207 23 14 -1.1053 5.1361 8.3068 24 1 -0.9227 6.6056 8.4170 25 1 -2.4458 4.7630 8.8257 26 1 -0.0578 4.4460 9.1016 27 6 4.2663 4.8288 0.5553 28 1 4.1850 5.7240 -0.0613 29 6 3.9314 3.5618 -0.2208 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8400 -0.0004 34 1 3.7918 0.2027 -1.9212 35 1 3.7918 1.9813 -1.9897 36 1 5.2454 1.1113 -1.4425 37 1 5.6908 1.3368 1.5633 38 1 6.1494 2.2342 0.1012 39 1 5.5874 3.3122 2.8670 40 1 7.0919 3.4044 1.9398 41 1 4.8169 6.6858 2.1541 42 1 5.0168 5.3641 3.3832 43 1 2.7203 4.4379 4.4276 44 1 2.0852 6.0229 3.9250 45 1 -2.7976 3.8581 6.4121 46 1 2.8911 3.5976 -0.5441 47 1 4.5814 3.4868 -1.0925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221291416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:44 Heat of formation + Delta-G solvation = -36.249296 kcal Electronic energy + Delta-G solvation = -29316.783336 eV Core-core repulsion = 25433.743055 eV Total energy + Delta-G solvation = -3883.040281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.12194 -40.61799 -38.99385 -37.60463 -35.41084 -34.60170 -33.54158 -31.74729 -31.36618 -29.23786 -27.90802 -27.74586 -27.56562 -24.77829 -24.45705 -22.66050 -21.31415 -21.00123 -19.77578 -18.63006 -18.14300 -17.79395 -17.41467 -16.90254 -16.71778 -16.64922 -16.12967 -15.93483 -15.72420 -15.62568 -15.26171 -14.86646 -14.64487 -14.50163 -14.19479 -14.13711 -13.67514 -13.46942 -13.40590 -13.22937 -13.16710 -13.08521 -12.96744 -12.87625 -12.79460 -12.63463 -12.36655 -12.10185 -11.92756 -11.71810 -11.40718 -11.29824 -11.14373 -10.40412 -10.28586 -10.21970 -9.94303 -9.37683 -8.99908 -8.66071 -8.34936 -6.13205 1.25348 1.41492 1.44312 1.55142 1.88257 1.99566 2.18772 2.28959 2.35496 2.97843 3.07025 3.29044 3.35440 3.74166 3.85310 3.90420 4.05390 4.14847 4.20907 4.26487 4.29950 4.40766 4.45263 4.45758 4.51887 4.56991 4.59365 4.61773 4.63703 4.70894 4.78308 4.80677 4.95668 4.97857 5.07633 5.15934 5.17586 5.27062 5.28732 5.38052 5.52621 5.64892 6.14951 6.17778 6.34675 6.77302 7.01688 7.04889 7.50706 7.65525 8.74259 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003869 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.767333 B = 7235.908854 C = 8908.852816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.732 5.732 3 C 0.487 3.513 4 O -0.528 6.528 5 C 0.075 3.925 6 H 0.116 0.884 7 C -0.165 4.165 8 N -0.532 5.532 9 C 0.059 3.941 10 C -0.094 4.094 11 C -0.095 4.095 12 H 0.135 0.865 13 C 0.095 3.905 14 N -0.637 5.637 15 C 0.549 3.451 16 O -0.517 6.517 17 C -0.112 4.112 18 S -0.145 6.145 19 C -0.550 4.550 20 H 0.077 0.923 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.261 1.261 27 C 0.132 3.868 28 H 0.096 0.904 29 C 0.051 3.949 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.020 0.980 33 H 0.414 0.586 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.271 0.729 46 H 0.068 0.932 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.219 -6.364 -14.344 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.388 5.388 3 C 0.272 3.728 4 O -0.402 6.402 5 C -0.037 4.037 6 H 0.133 0.867 7 C -0.224 4.224 8 N -0.257 5.257 9 C -0.068 4.068 10 C -0.131 4.131 11 C -0.114 4.114 12 H 0.152 0.848 13 C -0.028 4.028 14 N -0.376 5.376 15 C 0.336 3.664 16 O -0.391 6.391 17 C -0.264 4.264 18 S 0.083 5.917 19 C -0.698 4.698 20 H 0.095 0.905 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.186 1.186 27 C 0.029 3.971 28 H 0.114 0.886 29 C -0.077 4.077 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.039 0.961 33 H 0.250 0.750 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.881 -6.467 -14.850 26.426 hybrid contribution 0.413 0.473 1.268 1.414 sum 21.294 -5.995 -13.582 25.958 Atomic orbital electron populations 1.21404 0.80215 1.03298 1.00056 1.45693 1.07416 1.08793 1.76851 1.21378 0.91375 0.83889 0.76188 1.90897 1.70629 1.31843 1.46834 1.21569 0.90288 0.94971 0.96885 0.86655 1.22259 1.02840 1.03104 0.94186 1.61510 1.19339 1.01545 1.43306 1.21778 0.86361 0.99307 0.99402 1.20832 1.01834 0.91860 0.98608 1.22568 0.95558 0.97252 0.96034 0.84754 1.23587 0.81072 0.98326 0.99767 1.49363 1.12568 1.59964 1.15657 1.19337 0.80459 0.78898 0.87750 1.90873 1.47515 1.40678 1.60031 1.23224 1.01720 1.04123 0.97319 1.85599 1.12348 1.79426 1.14366 1.23170 1.03957 1.45772 0.96890 0.90534 1.26147 0.93960 0.94354 1.04552 1.70196 1.04807 1.40628 1.39179 0.85000 0.77938 0.79131 0.75866 1.18650 1.19980 1.18591 1.22480 0.89776 0.97729 0.87130 0.88601 1.22147 1.02164 0.89655 0.93773 0.93649 0.87097 0.96133 0.75032 0.90262 0.93214 0.89239 0.90330 0.92673 0.93710 0.87842 0.88154 0.90536 0.89481 0.89283 0.91973 0.91377 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.58 10.70 127.77 1.37 3.95 16 2 N -0.73 -18.39 5.71 -484.51 -2.77 -21.16 16 3 C 0.49 15.52 6.99 87.66 0.61 16.14 16 4 O -0.53 -23.49 11.43 18.39 0.21 -23.28 16 5 C 0.07 1.66 2.69 44.17 0.12 1.78 16 6 H 0.12 1.99 7.79 -2.39 -0.02 1.97 16 7 C -0.16 -2.52 8.28 71.98 0.60 -1.93 16 8 N -0.53 -13.49 4.32 -880.66 -3.81 -17.30 16 9 C 0.06 0.97 5.13 85.97 0.44 1.41 16 10 C -0.09 -1.43 5.74 29.75 0.17 -1.26 16 11 C -0.10 -1.45 4.57 -10.92 -0.05 -1.50 16 12 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 13 C 0.09 1.94 7.84 81.64 0.64 2.58 16 14 N -0.64 -20.46 3.30 -857.43 -2.83 -23.29 16 15 C 0.55 24.65 8.02 87.66 0.70 25.36 16 16 O -0.52 -27.94 13.03 18.41 0.24 -27.70 16 17 C -0.11 -5.35 6.01 71.24 0.43 -4.92 16 18 S -0.14 -8.90 20.57 -56.49 -1.16 -10.06 16 19 C -0.55 -33.91 9.50 67.95 0.65 -33.26 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.87 5.49 84.86 0.47 1.34 16 22 N -0.91 -58.87 13.22 21.65 0.29 -58.58 16 23 Si 1.00 45.80 29.55 68.60 2.03 47.83 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 C 0.13 3.18 4.24 39.55 0.17 3.35 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 C 0.05 1.34 3.47 86.07 0.30 1.63 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.41 6.57 8.83 -92.71 -0.82 5.75 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.96 6.49 -2.39 -0.02 0.94 16 36 H 0.09 0.94 7.13 -2.38 -0.02 0.92 16 37 H 0.08 1.20 7.85 -2.39 -0.02 1.18 16 38 H 0.06 0.64 7.12 -2.38 -0.02 0.63 16 39 H 0.04 0.94 7.48 -2.39 -0.02 0.92 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.57 7.81 -2.39 -0.02 1.55 16 43 H 0.09 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.09 3.97 8.14 -2.40 -0.02 3.95 16 45 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 46 H 0.07 2.55 5.25 -2.39 -0.01 2.54 16 47 H 0.06 1.26 6.67 -2.39 -0.02 1.24 16 Total: -1.00 -94.80 381.09 -1.04 -95.84 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.16 Total: 23.04 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.61 Total: 14.67 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -9.12 Total: -120.33 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: 0.45 Total: -50.98 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.16 Total: -10.06 kcal Total: -94.80 -1.04 -95.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.588 kcal (2) G-P(sol) polarization free energy of solvation -94.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds