Wall clock time and date at job start Sat Apr 11 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00121 * 2 1 4 4 O 1.21277 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00289 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47203 * 59.99936 * 5 3 2 7 7 C 1.53003 * 109.47086 * 300.00170 * 5 3 2 8 8 N 1.46897 * 109.47157 * 180.02562 * 5 3 2 9 9 C 1.46483 * 111.00278 * 66.04467 * 8 5 3 10 10 C 1.51627 * 111.08614 * 189.62219 * 9 8 5 11 11 C 1.51690 * 113.70745 * 312.98695 * 10 9 8 12 12 H 1.08997 * 112.64371 * 255.28647 * 11 10 9 13 13 C 1.54560 * 111.75998 * 125.35940 * 11 10 9 14 14 N 1.47747 * 85.84038 * 267.68613 * 13 11 10 15 15 C 1.34782 * 134.92880 * 154.13880 * 14 13 11 16 16 O 1.21281 * 120.00320 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99590 * 359.96584 * 15 14 13 18 18 S 1.81007 * 109.46975 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99952 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99919 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47168 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47344 * 119.99605 * 23 21 19 26 26 H 1.48500 * 109.47323 * 239.99529 * 23 21 19 27 27 C 1.46953 * 90.14881 * 334.11447 * 14 13 11 28 28 H 1.09006 * 112.92870 * 272.62047 * 27 14 13 29 29 C 1.46828 * 110.92321 * 188.95092 * 8 5 3 30 30 H 1.08998 * 109.47505 * 300.00202 * 1 2 3 31 31 H 1.08998 * 109.46911 * 60.00295 * 1 2 3 32 32 H 1.09002 * 109.47019 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00277 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.46744 * 299.99681 * 7 5 3 35 35 H 1.09002 * 109.47438 * 59.99750 * 7 5 3 36 36 H 1.09001 * 109.46906 * 180.02562 * 7 5 3 37 37 H 1.09002 * 109.14680 * 69.22323 * 9 8 5 38 38 H 1.09005 * 109.14715 * 310.01737 * 9 8 5 39 39 H 1.09000 * 108.63563 * 74.08168 * 10 9 8 40 40 H 1.09000 * 108.63583 * 191.89811 * 10 9 8 41 41 H 1.08995 * 113.81597 * 21.91463 * 13 11 10 42 42 H 1.09004 * 113.81128 * 153.45551 * 13 11 10 43 43 H 1.09000 * 109.47595 * 299.99879 * 17 15 14 44 44 H 1.09006 * 109.47208 * 60.00473 * 17 15 14 45 45 H 0.97002 * 119.99427 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.45504 * 52.09761 * 29 8 5 47 47 H 1.08999 * 109.45020 * 292.20298 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0096 0.6533 -0.8891 7 6 4.1554 0.4463 1.2502 8 7 4.1355 2.5523 0.0011 9 6 3.7865 3.2320 1.2508 10 6 4.0784 4.7174 1.1638 11 6 5.4470 5.0376 0.5933 12 1 6.1567 5.3540 1.3577 13 6 5.3540 5.9967 -0.6152 14 7 5.3113 4.7747 -1.4446 15 6 4.8150 4.4654 -2.6589 16 8 4.9351 3.3399 -3.0944 17 6 4.1106 5.5181 -3.4754 18 16 3.5628 4.7990 -5.0435 19 6 2.7963 6.2070 -5.7747 20 1 2.7768 7.1475 -5.2442 21 6 2.2167 6.1071 -7.0319 22 7 2.2402 4.9606 -7.6782 23 14 1.4035 7.5996 -7.8067 24 1 1.5106 8.7572 -6.8827 25 1 2.0816 7.9237 -9.0876 26 1 -0.0286 7.3044 -8.0657 27 6 6.0338 4.0358 -0.3999 28 1 7.1168 4.1164 -0.4944 29 6 5.5877 2.5951 -0.2117 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7917 0.9604 2.1399 35 1 3.7921 -0.5814 1.2503 36 1 5.2454 0.4467 1.2508 37 1 4.3669 2.8008 2.0665 38 1 2.7250 3.0875 1.4521 39 1 3.3208 5.1850 0.5349 40 1 4.0092 5.1452 2.1639 41 1 4.4340 6.5804 -0.6440 42 1 6.2484 6.6009 -0.7673 43 1 3.2461 5.8876 -2.9240 44 1 4.7953 6.3430 -3.6731 45 1 1.8354 4.8909 -8.5570 46 1 5.8415 2.0177 -1.1007 47 1 6.0941 2.1685 0.6540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221291417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:55 Heat of formation + Delta-G solvation = -14.806581 kcal Electronic energy + Delta-G solvation = -28862.798598 eV Core-core repulsion = 24980.688144 eV Total energy + Delta-G solvation = -3882.110455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.11715 -39.79845 -37.70507 -36.58621 -34.64240 -32.55745 -32.33133 -31.04335 -30.10917 -27.79682 -27.01117 -26.82809 -25.37781 -24.08353 -23.62799 -21.83853 -20.39634 -19.82868 -17.89759 -17.52412 -17.42788 -16.70250 -16.15532 -15.73820 -15.55558 -15.44287 -14.87432 -14.72278 -14.58780 -14.42344 -14.01220 -13.87595 -13.57494 -13.25663 -13.21421 -12.74107 -12.66883 -12.58687 -12.44498 -12.39899 -12.20655 -11.97075 -11.70622 -11.58002 -11.37730 -11.06549 -10.99701 -10.90729 -10.67143 -10.54300 -10.37454 -9.69463 -9.62230 -9.16365 -8.98280 -8.97932 -8.28200 -8.17727 -8.08891 -6.36318 -6.12394 -3.80519 2.68576 2.96274 3.03308 3.27540 3.31755 3.37253 3.40504 3.72115 3.83680 4.21989 4.30359 4.56278 4.64589 4.73370 4.85313 4.91311 5.04721 5.06395 5.10207 5.18638 5.22644 5.28700 5.30597 5.34432 5.38138 5.41105 5.47874 5.55533 5.62062 5.69857 5.71344 5.75919 5.80059 5.84859 5.97738 6.06239 6.14726 6.28074 6.33066 6.33414 6.39264 6.95521 7.11775 7.42703 7.69290 8.17739 8.25757 8.45235 8.89502 9.33098 10.95217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.003521 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.827498 B = 7950.892659 C = 9434.194458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.519 3.481 4 O -0.511 6.511 5 C 0.067 3.933 6 H 0.111 0.889 7 C -0.182 4.182 8 N -0.494 5.494 9 C 0.054 3.946 10 C -0.092 4.092 11 C -0.116 4.116 12 H 0.086 0.914 13 C 0.103 3.897 14 N -0.630 5.630 15 C 0.568 3.432 16 O -0.515 6.515 17 C -0.142 4.142 18 S -0.060 6.060 19 C -0.531 4.531 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.146 3.854 28 H 0.089 0.911 29 C 0.053 3.947 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.266 0.734 46 H 0.091 0.909 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -7.973 24.111 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.394 5.394 3 C 0.304 3.696 4 O -0.385 6.385 5 C -0.045 4.045 6 H 0.129 0.871 7 C -0.242 4.242 8 N -0.217 5.217 9 C -0.074 4.074 10 C -0.130 4.130 11 C -0.135 4.135 12 H 0.104 0.896 13 C -0.020 4.020 14 N -0.369 5.369 15 C 0.357 3.643 16 O -0.389 6.389 17 C -0.293 4.293 18 S 0.166 5.834 19 C -0.680 4.680 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.042 3.958 28 H 0.106 0.894 29 C -0.075 4.075 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.972 -8.736 22.670 24.798 hybrid contribution -0.056 1.460 0.512 1.548 sum 4.916 -7.276 23.182 24.789 Atomic orbital electron populations 1.21501 0.79595 1.01937 1.02455 1.45784 1.07698 1.08626 1.77244 1.20471 0.89680 0.83655 0.75819 1.90707 1.69831 1.30937 1.46976 1.21607 0.92208 0.90872 0.99812 0.87115 1.22441 1.02368 1.00912 0.98436 1.61687 1.12564 1.12171 1.35293 1.21845 1.02101 0.94063 0.89363 1.20752 0.95482 0.96136 1.00656 1.22631 0.98098 0.96724 0.96038 0.89551 1.23445 1.02052 0.89496 0.87056 1.49697 1.58323 1.12439 1.16437 1.19706 0.77442 0.88945 0.78195 1.90638 1.57457 1.22050 1.68742 1.23441 1.02198 1.00684 1.02972 1.85309 1.72559 1.16913 1.08584 1.22926 1.42277 0.97456 1.05304 0.91038 1.24972 0.95724 0.96836 0.96064 1.70042 1.42755 1.24079 1.13599 0.86140 0.78918 0.81627 0.78951 1.19633 1.20626 1.20612 1.22101 0.96030 0.92426 0.85271 0.89359 1.22002 0.87493 0.96703 1.01308 0.92497 0.91939 0.90894 0.76816 0.91724 0.91640 0.91264 0.95641 0.89214 0.90797 0.91603 0.90012 0.90170 0.89661 0.89949 0.92388 0.89078 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.70 59.84 0.64 1.46 16 2 N -0.74 -7.34 5.61 -67.08 -0.38 -7.72 16 3 C 0.52 7.04 6.78 -10.98 -0.07 6.97 16 4 O -0.51 -9.22 14.39 5.56 0.08 -9.14 16 5 C 0.07 0.78 2.74 -68.87 -0.19 0.60 16 6 H 0.11 1.34 7.98 -51.93 -0.41 0.93 16 7 C -0.18 -1.39 8.32 37.16 0.31 -1.08 16 8 N -0.49 -6.66 4.26 -229.96 -0.98 -7.64 16 9 C 0.05 0.63 4.17 -4.75 -0.02 0.61 16 10 C -0.09 -1.00 5.75 -28.09 -0.16 -1.16 16 11 C -0.12 -1.12 4.39 -90.63 -0.40 -1.52 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 13 C 0.10 1.17 8.04 -2.92 -0.02 1.15 16 14 N -0.63 -9.86 3.30 -172.92 -0.57 -10.43 16 15 C 0.57 11.92 7.99 -10.98 -0.09 11.83 16 16 O -0.51 -12.45 15.60 5.56 0.09 -12.36 16 17 C -0.14 -3.24 5.93 36.01 0.21 -3.02 16 18 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 19 C -0.53 -15.95 9.50 30.94 0.29 -15.65 16 20 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 22 N -0.87 -27.14 13.22 55.49 0.73 -26.41 16 23 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.15 1.74 4.43 -68.69 -0.30 1.44 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 C 0.05 0.64 4.44 -4.38 -0.02 0.62 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.64 8.25 -40.82 -0.34 2.30 16 34 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 35 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 36 H 0.07 0.48 6.81 -51.93 -0.35 0.13 16 37 H 0.03 0.25 6.65 -51.93 -0.35 -0.10 16 38 H 0.09 1.23 5.74 -51.93 -0.30 0.93 16 39 H 0.07 1.00 7.37 -51.93 -0.38 0.62 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 44 H 0.08 1.75 8.14 -51.91 -0.42 1.33 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 1.29 7.45 -51.93 -0.39 0.91 16 47 H 0.04 0.40 6.83 -51.93 -0.35 0.05 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -39.33 384.73 -9.73 -49.06 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.35 Total: 1.24 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.08 Total: 4.30 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -1.19 Total: -52.20 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.17 Total: -21.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.33 -9.73 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.250 kcal (2) G-P(sol) polarization free energy of solvation -39.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds