Wall clock time and date at job start Sat Apr 11 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00121 * 2 1 4 4 O 1.21277 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00289 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47203 * 59.99936 * 5 3 2 7 7 C 1.53003 * 109.47086 * 300.00170 * 5 3 2 8 8 N 1.46897 * 109.47157 * 180.02562 * 5 3 2 9 9 C 1.46483 * 111.00278 * 66.04467 * 8 5 3 10 10 C 1.51627 * 111.08614 * 189.62219 * 9 8 5 11 11 C 1.51690 * 113.70745 * 312.98695 * 10 9 8 12 12 H 1.08997 * 112.64371 * 255.28647 * 11 10 9 13 13 C 1.54560 * 111.75998 * 125.35940 * 11 10 9 14 14 N 1.47747 * 85.84038 * 267.68613 * 13 11 10 15 15 C 1.34782 * 134.92880 * 154.13880 * 14 13 11 16 16 O 1.21281 * 120.00320 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99590 * 359.96584 * 15 14 13 18 18 S 1.81007 * 109.46975 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99952 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99919 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47168 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47344 * 119.99605 * 23 21 19 26 26 H 1.48500 * 109.47323 * 239.99529 * 23 21 19 27 27 C 1.46953 * 90.14881 * 334.11447 * 14 13 11 28 28 H 1.09006 * 112.92870 * 272.62047 * 27 14 13 29 29 C 1.46828 * 110.92321 * 188.95092 * 8 5 3 30 30 H 1.08998 * 109.47505 * 300.00202 * 1 2 3 31 31 H 1.08998 * 109.46911 * 60.00295 * 1 2 3 32 32 H 1.09002 * 109.47019 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00277 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.46744 * 299.99681 * 7 5 3 35 35 H 1.09002 * 109.47438 * 59.99750 * 7 5 3 36 36 H 1.09001 * 109.46906 * 180.02562 * 7 5 3 37 37 H 1.09002 * 109.14680 * 69.22323 * 9 8 5 38 38 H 1.09005 * 109.14715 * 310.01737 * 9 8 5 39 39 H 1.09000 * 108.63563 * 74.08168 * 10 9 8 40 40 H 1.09000 * 108.63583 * 191.89811 * 10 9 8 41 41 H 1.08995 * 113.81597 * 21.91463 * 13 11 10 42 42 H 1.09004 * 113.81128 * 153.45551 * 13 11 10 43 43 H 1.09000 * 109.47595 * 299.99879 * 17 15 14 44 44 H 1.09006 * 109.47208 * 60.00473 * 17 15 14 45 45 H 0.97002 * 119.99427 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.45504 * 52.09761 * 29 8 5 47 47 H 1.08999 * 109.45020 * 292.20298 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0096 0.6533 -0.8891 7 6 4.1554 0.4463 1.2502 8 7 4.1355 2.5523 0.0011 9 6 3.7865 3.2320 1.2508 10 6 4.0784 4.7174 1.1638 11 6 5.4470 5.0376 0.5933 12 1 6.1567 5.3540 1.3577 13 6 5.3540 5.9967 -0.6152 14 7 5.3113 4.7747 -1.4446 15 6 4.8150 4.4654 -2.6589 16 8 4.9351 3.3399 -3.0944 17 6 4.1106 5.5181 -3.4754 18 16 3.5628 4.7990 -5.0435 19 6 2.7963 6.2070 -5.7747 20 1 2.7768 7.1475 -5.2442 21 6 2.2167 6.1071 -7.0319 22 7 2.2402 4.9606 -7.6782 23 14 1.4035 7.5996 -7.8067 24 1 1.5106 8.7572 -6.8827 25 1 2.0816 7.9237 -9.0876 26 1 -0.0286 7.3044 -8.0657 27 6 6.0338 4.0358 -0.3999 28 1 7.1168 4.1164 -0.4944 29 6 5.5877 2.5951 -0.2117 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7917 0.9604 2.1399 35 1 3.7921 -0.5814 1.2503 36 1 5.2454 0.4467 1.2508 37 1 4.3669 2.8008 2.0665 38 1 2.7250 3.0875 1.4521 39 1 3.3208 5.1850 0.5349 40 1 4.0092 5.1452 2.1639 41 1 4.4340 6.5804 -0.6440 42 1 6.2484 6.6009 -0.7673 43 1 3.2461 5.8876 -2.9240 44 1 4.7953 6.3430 -3.6731 45 1 1.8354 4.8909 -8.5570 46 1 5.8415 2.0177 -1.1007 47 1 6.0941 2.1685 0.6540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221291417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:53 Heat of formation + Delta-G solvation = -46.227967 kcal Electronic energy + Delta-G solvation = -28864.161132 eV Core-core repulsion = 24980.688144 eV Total energy + Delta-G solvation = -3883.472988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.12754 -40.86709 -39.14005 -37.65505 -35.65520 -34.61633 -33.54292 -31.99383 -31.51453 -29.16696 -27.89070 -27.72804 -27.63445 -24.97466 -24.61788 -22.76581 -21.52042 -20.97040 -19.78879 -18.69852 -18.39821 -17.92518 -17.36511 -16.92990 -16.83391 -16.79074 -16.54411 -15.97155 -15.85255 -15.63066 -15.42078 -14.93959 -14.80301 -14.59675 -14.25101 -14.13950 -13.76490 -13.53516 -13.49671 -13.40439 -13.19541 -13.14432 -13.04283 -12.92536 -12.78059 -12.64886 -12.51165 -12.29046 -12.00324 -11.72559 -11.42589 -11.31781 -11.18056 -10.69410 -10.51704 -10.30004 -10.11800 -9.49267 -9.05768 -8.68229 -8.37268 -6.15165 1.23446 1.38516 1.42604 1.55166 1.64707 1.81044 2.08250 2.17154 2.25906 2.96222 2.97725 3.23899 3.33893 3.65672 3.74263 3.87018 3.97123 4.06415 4.10844 4.23322 4.25691 4.36746 4.40113 4.43326 4.48057 4.52450 4.55660 4.57645 4.60102 4.68822 4.73747 4.80414 4.89548 4.91626 4.95296 5.09554 5.14224 5.19458 5.27726 5.37795 5.45791 5.48146 6.08568 6.16923 6.26727 6.58422 6.82675 7.03281 7.30090 7.35422 8.72666 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.003521 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.827498 B = 7950.892659 C = 9434.194458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.726 5.726 3 C 0.509 3.491 4 O -0.567 6.567 5 C 0.068 3.932 6 H 0.098 0.902 7 C -0.168 4.168 8 N -0.531 5.531 9 C 0.059 3.941 10 C -0.094 4.094 11 C -0.092 4.092 12 H 0.137 0.863 13 C 0.096 3.904 14 N -0.632 5.632 15 C 0.561 3.439 16 O -0.561 6.561 17 C -0.117 4.117 18 S -0.145 6.145 19 C -0.549 4.549 20 H 0.077 0.923 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.259 1.259 25 H -0.268 1.268 26 H -0.272 1.272 27 C 0.136 3.864 28 H 0.118 0.882 29 C 0.056 3.944 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.113 0.887 33 H 0.417 0.583 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.272 0.728 46 H 0.061 0.939 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -7.058 26.885 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.295 3.705 4 O -0.445 6.445 5 C -0.045 4.045 6 H 0.115 0.885 7 C -0.227 4.227 8 N -0.255 5.255 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.111 4.111 12 H 0.154 0.846 13 C -0.026 4.026 14 N -0.368 5.368 15 C 0.350 3.650 16 O -0.440 6.440 17 C -0.268 4.268 18 S 0.082 5.918 19 C -0.697 4.697 20 H 0.095 0.905 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.198 1.198 27 C 0.034 3.966 28 H 0.135 0.865 29 C -0.072 4.072 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.497 -7.848 25.513 27.472 hybrid contribution -0.513 1.121 -0.234 1.255 sum 5.984 -6.727 25.279 26.835 Atomic orbital electron populations 1.21599 0.79108 1.04095 1.00903 1.45729 1.08170 1.08577 1.75484 1.21026 0.90793 0.83702 0.74972 1.90677 1.71013 1.32971 1.49802 1.21602 0.90699 0.90839 1.01314 0.88460 1.22344 1.03017 1.01468 0.95893 1.61594 1.13580 1.13512 1.36849 1.21766 1.00921 0.94655 0.89533 1.20812 0.95242 0.95470 1.01669 1.22551 0.98062 0.94496 0.95964 0.84558 1.23867 1.03267 0.88860 0.86593 1.49783 1.56737 1.15521 1.14809 1.19324 0.78093 0.87723 0.79862 1.90608 1.59645 1.23289 1.70426 1.23244 1.02581 1.01388 0.99625 1.85429 1.73442 1.19556 1.13351 1.23223 1.42977 0.97366 1.06088 0.90529 1.26145 0.95972 1.00537 0.96376 1.70197 1.43595 1.26759 1.14193 0.84891 0.77720 0.77123 0.78102 1.18264 1.19345 1.19757 1.22627 0.97294 0.92756 0.83950 0.86495 1.21970 0.87135 0.96679 1.01438 0.92808 0.94792 0.86810 0.74690 0.91636 0.89477 0.89899 0.92779 0.91946 0.94562 0.88586 0.90713 0.86939 0.89786 0.88427 0.91908 0.92087 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.70 127.77 1.37 2.99 16 2 N -0.73 -14.49 5.61 -484.53 -2.72 -17.20 16 3 C 0.51 14.43 6.78 87.66 0.59 15.02 16 4 O -0.57 -21.93 14.39 -3.02 -0.04 -21.97 16 5 C 0.07 1.59 2.74 44.17 0.12 1.71 16 6 H 0.10 2.49 7.98 -2.39 -0.02 2.47 16 7 C -0.17 -2.20 8.32 71.98 0.60 -1.60 16 8 N -0.53 -14.26 4.26 -881.45 -3.76 -18.02 16 9 C 0.06 1.30 4.17 85.93 0.36 1.66 16 10 C -0.09 -1.85 5.75 29.71 0.17 -1.68 16 11 C -0.09 -1.43 4.39 -10.74 -0.05 -1.47 16 12 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 13 C 0.10 1.93 8.04 86.42 0.69 2.63 16 14 N -0.63 -19.29 3.30 -819.39 -2.70 -21.99 16 15 C 0.56 24.38 7.99 87.66 0.70 25.08 16 16 O -0.56 -28.66 15.60 -3.03 -0.05 -28.71 16 17 C -0.12 -5.53 5.93 71.24 0.42 -5.11 16 18 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 19 C -0.55 -33.89 9.50 67.95 0.65 -33.24 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.86 5.49 84.86 0.47 1.33 16 22 N -0.91 -58.56 13.22 21.65 0.29 -58.28 16 23 Si 1.00 46.08 29.55 68.60 2.03 48.11 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 C 0.14 2.89 4.43 44.25 0.20 3.08 16 28 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 29 C 0.06 1.25 4.44 85.98 0.38 1.64 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.42 5.09 8.25 -92.71 -0.76 4.32 16 34 H 0.06 0.87 6.53 -2.38 -0.02 0.86 16 35 H 0.09 0.75 7.56 -2.39 -0.02 0.73 16 36 H 0.08 0.88 6.81 -2.39 -0.02 0.87 16 37 H 0.05 0.87 6.65 -2.39 -0.02 0.86 16 38 H 0.06 1.75 5.74 -2.38 -0.01 1.74 16 39 H 0.04 0.98 7.37 -2.39 -0.02 0.96 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.64 7.68 -2.39 -0.02 1.62 16 42 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.08 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 45 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.06 1.76 7.45 -2.38 -0.02 1.74 16 47 H 0.08 1.19 6.83 -2.39 -0.02 1.17 16 Total: -1.00 -93.98 384.73 -1.22 -95.20 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.22 Total: 20.83 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.67 Total: 12.04 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -8.89 Total: -115.49 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.09 Total: -50.68 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -93.98 -1.22 -95.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221291417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.977 kcal (2) G-P(sol) polarization free energy of solvation -93.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds