Wall clock time and date at job start Sat Apr 11 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47446 * 2 1 4 4 C 1.34228 * 117.00120 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99816 * 179.97438 * 4 3 2 7 7 N 1.46894 * 109.46621 * 174.33237 * 6 4 3 8 8 C 1.46895 * 111.00508 * 287.76898 * 7 6 4 9 9 C 1.50702 * 109.47328 * 293.98071 * 8 7 6 10 10 H 1.08003 * 119.99534 * 5.32103 * 9 8 7 11 11 C 1.37874 * 120.00663 * 185.31746 * 9 8 7 12 12 N 1.31523 * 119.99495 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00493 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46847 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47399 * 119.99985 * 13 11 9 16 16 H 1.48501 * 109.46995 * 240.00210 * 13 11 9 17 17 C 1.46910 * 110.99841 * 163.81682 * 7 6 4 18 18 C 1.52996 * 109.47224 * 189.99867 * 17 7 6 19 19 H 1.09001 * 109.47265 * 305.00021 * 18 17 7 20 20 O 1.42905 * 109.47303 * 65.00058 * 18 17 7 21 21 C 1.53002 * 109.47268 * 184.99922 * 18 17 7 22 22 O 1.42898 * 109.47238 * 175.00223 * 21 18 17 23 23 C 1.42903 * 114.00006 * 180.02562 * 22 21 18 24 24 C 1.50700 * 109.47097 * 179.97438 * 23 22 21 25 25 C 1.34515 * 125.78473 * 89.71369 * 24 23 22 26 26 C 1.41385 * 106.83849 * 179.88851 * 25 24 23 27 27 C 1.34516 * 106.83991 * 0.37166 * 26 25 24 28 28 O 1.34299 * 125.79311 * 270.02460 * 24 23 22 29 29 H 1.09007 * 109.46862 * 59.99738 * 1 2 3 30 30 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47163 * 300.00282 * 1 2 3 32 32 H 1.09000 * 109.47163 * 239.99718 * 2 1 3 33 33 H 1.09007 * 109.46862 * 120.00262 * 2 1 3 34 34 H 1.09003 * 109.47152 * 54.33259 * 6 4 3 35 35 H 1.09000 * 109.46882 * 294.33376 * 6 4 3 36 36 H 1.09003 * 109.46893 * 53.97650 * 8 7 6 37 37 H 1.09003 * 109.47894 * 173.98030 * 8 7 6 38 38 H 0.97000 * 119.99733 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46770 * 69.99621 * 17 7 6 40 40 H 1.08994 * 109.46927 * 310.00154 * 17 7 6 41 41 H 0.96696 * 113.99398 * 59.99698 * 20 18 17 42 42 H 1.08994 * 109.47227 * 295.00394 * 21 18 17 43 43 H 1.09003 * 109.46921 * 54.99873 * 21 18 17 44 44 H 1.08995 * 109.46752 * 299.99648 * 23 22 21 45 45 H 1.08995 * 109.47032 * 59.99575 * 23 22 21 46 46 H 1.07996 * 126.58324 * 0.02926 * 25 24 23 47 47 H 1.07998 * 126.58045 * 180.16638 * 26 25 24 48 48 H 1.07999 * 125.78921 * 179.74360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3814 2.8630 0.1375 8 6 5.7626 2.4688 1.5003 9 6 5.3658 3.5547 2.4669 10 1 4.8033 4.4084 2.1188 11 6 5.7208 3.4584 3.7957 12 7 6.4062 2.4190 4.2195 13 14 5.2283 4.8040 4.9940 14 1 4.4689 5.8562 4.2719 15 1 4.3777 4.2260 6.0652 16 1 6.4474 5.4000 5.5973 17 6 6.0110 4.1362 -0.2377 18 6 7.5272 3.9498 -0.3232 19 1 7.8969 3.5429 0.6180 20 8 7.8369 3.0471 -1.3869 21 6 8.1929 5.3011 -0.5911 22 8 9.6132 5.1478 -0.5554 23 6 10.3346 6.3580 -0.7943 24 6 11.8146 6.0810 -0.7331 25 6 12.5904 5.7174 -1.7702 26 6 13.9028 5.5662 -1.2667 27 6 13.8490 5.8384 0.0495 28 8 12.5817 6.1495 0.3671 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5056 3.5026 0.8344 35 1 3.6688 3.4344 -0.9368 36 1 5.2539 1.5421 1.7661 37 1 6.8411 2.3174 1.5466 38 1 6.6563 2.3514 5.1543 39 1 5.7795 4.8912 0.5136 40 1 5.6293 4.4587 -1.2063 41 1 7.5366 3.3458 -2.2561 42 1 7.8914 5.6664 -1.5727 43 1 7.8852 6.0154 0.1726 44 1 10.0776 6.7456 -1.7801 45 1 10.0713 7.0939 -0.0346 46 1 12.2722 5.5714 -2.7919 47 1 14.7796 5.2830 -1.8301 48 1 14.6834 5.8109 0.7348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252642343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:11 Heat of formation + Delta-G solvation = -180.203516 kcal Electronic energy + Delta-G solvation = -29910.670686 eV Core-core repulsion = 25546.342460 eV Total energy + Delta-G solvation = -4364.328226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.49936 -41.41876 -39.82643 -38.58219 -37.51144 -36.69348 -34.54921 -34.00631 -32.70151 -32.26656 -31.08634 -29.73837 -28.18666 -26.69262 -25.68751 -24.48798 -23.40114 -22.71463 -22.10166 -21.50260 -21.32309 -19.03204 -18.50530 -18.37521 -17.99983 -17.63890 -17.48844 -17.13327 -16.99621 -16.58377 -16.52032 -16.19063 -15.93244 -15.72396 -15.19405 -14.91430 -14.73478 -14.42596 -14.10782 -13.78176 -13.76524 -13.59714 -13.51607 -13.18629 -13.09844 -12.98993 -12.87694 -12.63871 -12.58265 -12.51219 -12.43949 -12.39100 -12.15809 -11.75006 -11.46325 -11.42252 -11.32723 -10.91190 -10.79873 -10.66746 -10.60994 -9.52307 -9.02131 -8.14405 -6.36722 0.64384 1.35340 1.37382 1.37920 1.49563 1.62296 1.72281 2.04794 2.36623 2.78751 3.11045 3.39622 3.71030 3.77667 3.92253 4.01581 4.07461 4.09031 4.11025 4.14576 4.18846 4.28113 4.32965 4.36699 4.37611 4.38857 4.52222 4.57883 4.65413 4.87273 4.87900 4.93428 4.94911 4.98829 5.14240 5.15149 5.16620 5.26865 5.38151 5.53653 5.58397 5.77224 5.92190 6.13993 6.17758 6.18618 6.40860 6.84807 6.96334 7.11703 7.36012 8.88752 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.002664 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.197622 B =10507.718456 C =12301.078228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.364 6.364 4 C 0.462 3.538 5 O -0.529 6.529 6 C 0.068 3.932 7 N -0.529 5.529 8 C 0.207 3.793 9 C -0.556 4.556 10 H 0.076 0.924 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.251 1.251 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.042 3.958 18 C 0.121 3.879 19 H 0.057 0.943 20 O -0.563 6.563 21 C 0.043 3.957 22 O -0.405 6.405 23 C 0.138 3.862 24 C -0.047 4.047 25 C -0.192 4.192 26 C -0.229 4.229 27 C -0.040 4.040 28 O -0.199 6.199 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.145 0.855 36 H -0.009 1.009 37 H 0.000 1.000 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.382 0.618 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.166 0.834 47 H 0.175 0.825 48 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 10.031 -14.635 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.305 3.695 5 O -0.417 6.417 6 C -0.060 4.060 7 N -0.253 5.253 8 C 0.080 3.920 9 C -0.595 4.595 10 H 0.094 0.906 11 C -0.191 4.191 12 N -0.570 5.570 13 Si 0.783 3.217 14 H -0.174 1.174 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.085 4.085 18 C 0.061 3.939 19 H 0.075 0.925 20 O -0.369 6.369 21 C -0.034 4.034 22 O -0.325 6.325 23 C 0.062 3.938 24 C -0.097 4.097 25 C -0.211 4.211 26 C -0.248 4.248 27 C -0.107 4.107 28 O -0.096 6.096 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.009 0.991 37 H 0.018 0.982 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.230 0.770 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.089 0.911 46 H 0.184 0.816 47 H 0.192 0.808 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.218 8.830 -14.020 16.614 hybrid contribution -0.195 0.745 1.358 1.561 sum 1.023 9.574 -12.663 15.908 Atomic orbital electron populations 1.21797 0.89681 1.04389 1.03836 1.23233 0.97491 0.79680 1.01820 1.86471 1.24016 1.33360 1.84298 1.24199 0.80363 0.93496 0.71394 1.90635 1.61160 1.44289 1.45626 1.21587 0.89667 0.89263 1.05532 1.61936 1.05585 1.30644 1.27155 1.19335 0.94680 0.94329 0.83652 1.22048 1.35714 1.07435 0.94267 0.90567 1.25920 0.94722 0.97850 1.00605 1.70148 1.39390 1.31156 1.16316 0.85495 0.78009 0.79356 0.78798 1.17387 1.20995 1.20909 1.22581 0.93450 0.90593 1.01923 1.21660 0.93140 0.88615 0.90470 0.92482 1.86673 1.82641 1.48848 1.18729 1.23242 0.79847 0.97445 1.02852 1.88035 1.18674 1.32404 1.93401 1.20855 0.82589 0.87066 1.03253 1.22426 0.93969 1.08395 0.84881 1.22011 0.93738 1.04459 1.00937 1.22246 0.99039 1.08131 0.95360 1.24902 0.84898 1.02761 0.98166 1.84021 1.20099 1.68915 1.36528 0.90445 0.88122 0.91647 0.91244 0.93161 0.90112 0.83726 0.99105 0.98175 0.92857 0.92737 0.87174 0.77011 0.88710 0.91570 0.86884 0.91140 0.81641 0.80781 0.74717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.29 71.98 0.74 -1.84 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.36 -12.18 10.22 -51.39 -0.53 -12.70 16 4 C 0.46 18.37 7.52 71.24 0.54 18.91 16 5 O -0.53 -25.53 14.92 21.99 0.33 -25.20 16 6 C 0.07 2.42 5.43 85.56 0.46 2.88 16 7 N -0.53 -22.30 4.25 -905.36 -3.85 -26.14 16 8 C 0.21 11.29 4.56 85.56 0.39 11.68 16 9 C -0.56 -29.80 7.33 25.60 0.19 -29.61 16 10 H 0.08 3.73 5.97 -2.91 -0.02 3.71 16 11 C 0.01 0.47 5.46 84.65 0.46 0.93 16 12 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 13 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 14 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 C 0.04 1.39 4.36 86.30 0.38 1.77 16 18 C 0.12 4.35 3.20 30.59 0.10 4.45 16 19 H 0.06 2.77 6.38 -2.39 -0.02 2.76 16 20 O -0.56 -20.26 13.25 -144.34 -1.91 -22.18 16 21 C 0.04 1.15 5.57 71.98 0.40 1.55 16 22 O -0.40 -12.93 10.29 -144.34 -1.49 -14.42 16 23 C 0.14 3.28 6.47 71.24 0.46 3.74 16 24 C -0.05 -1.28 6.95 24.83 0.17 -1.11 16 25 C -0.19 -4.48 10.81 22.19 0.24 -4.24 16 26 C -0.23 -4.68 10.91 22.19 0.24 -4.43 16 27 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 28 O -0.20 -5.69 10.65 -2.43 -0.03 -5.72 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.05 1.56 8.13 -2.38 -0.02 1.54 16 34 H 0.08 2.98 6.51 -2.39 -0.02 2.96 16 35 H 0.15 3.62 7.80 -2.39 -0.02 3.60 16 36 H -0.01 -0.58 6.58 -2.39 -0.02 -0.60 16 37 H 0.00 0.01 6.47 -2.39 -0.02 -0.01 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.05 1.89 6.26 -2.39 -0.01 1.87 16 40 H 0.11 2.52 7.86 -2.39 -0.02 2.50 16 41 H 0.38 9.31 9.04 -74.06 -0.67 8.64 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 48 H 0.24 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -84.51 403.48 1.17 -83.34 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.30 Total: 28.64 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.03 Total: 6.52 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.56 Total: -83.47 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -3.62 Total: -80.22 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -84.51 1.17 -83.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252642343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.862 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds