Wall clock time and date at job start Sat Apr 11 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21287 * 119.99624 * 2 1 4 4 N 1.34779 * 119.99895 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.55642 * 353.90069 * 4 2 1 6 6 C 1.53429 * 107.78631 * 224.63756 * 5 4 2 7 7 C 1.52853 * 108.85758 * 296.76873 * 6 5 4 8 8 H 1.09007 * 109.24132 * 291.16142 * 7 6 5 9 9 N 1.46501 * 109.26930 * 171.67244 * 7 6 5 10 10 C 1.35313 * 125.86670 * 273.69763 * 9 7 6 11 11 C 1.35345 * 106.17427 * 179.90851 * 10 9 7 12 12 C 1.50705 * 126.74997 * 180.12699 * 11 10 9 13 13 N 1.46500 * 109.47229 * 95.29276 * 12 11 10 14 14 C 1.36931 * 119.99932 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00199 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00148 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47064 * 89.99650 * 18 16 14 20 20 H 1.48496 * 109.47410 * 209.99441 * 18 16 14 21 21 H 1.48500 * 109.47121 * 329.99883 * 18 16 14 22 22 N 1.33770 * 106.49976 * 0.34787 * 11 10 9 23 23 N 1.28640 * 108.88463 * 359.77740 * 22 11 10 24 24 C 1.50590 * 110.50108 * 51.40517 * 7 6 5 25 25 C 1.38511 * 118.92617 * 159.47278 * 24 7 6 26 26 C 1.38119 * 120.30271 * 179.79781 * 25 24 7 27 27 C 1.38308 * 120.15292 * 0.19420 * 26 25 24 28 28 C 1.38031 * 119.90425 * 359.56649 * 27 26 25 29 29 C 1.38563 * 121.50529 * 339.32779 * 24 7 6 30 30 H 1.09000 * 109.46796 * 245.09429 * 1 2 3 31 31 H 1.08992 * 109.47271 * 5.09315 * 1 2 3 32 32 H 1.09004 * 109.47086 * 125.09674 * 1 2 3 33 33 H 1.08993 * 109.79587 * 105.06480 * 5 4 2 34 34 H 1.08996 * 109.84042 * 344.23241 * 5 4 2 35 35 H 1.09000 * 109.57263 * 176.95575 * 6 5 4 36 36 H 1.08998 * 109.67611 * 56.64065 * 6 5 4 37 37 H 1.08004 * 126.91293 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.46612 * 215.29111 * 12 11 10 39 39 H 1.08992 * 109.47064 * 335.28825 * 12 11 10 40 40 H 0.96998 * 119.99904 * 359.97438 * 13 12 11 41 41 H 0.96992 * 120.00451 * 180.02562 * 17 16 14 42 42 H 1.08004 * 119.85389 * 359.81692 * 25 24 7 43 43 H 1.08001 * 119.92639 * 179.91537 * 26 25 24 44 44 H 1.07998 * 120.04810 * 179.80489 * 27 26 25 45 45 H 1.08001 * 119.98274 * 180.29785 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4648 -2.4432 0.1333 6 6 2.2336 -3.3087 1.1404 7 6 3.6226 -3.6068 0.5765 8 1 3.5268 -4.2726 -0.2813 9 7 4.4329 -4.2602 1.6074 10 6 5.1668 -3.6324 2.5551 11 6 5.7471 -4.6089 3.2910 12 6 6.6633 -4.4235 4.4730 13 7 5.8844 -4.4996 5.7114 14 6 6.5079 -4.3581 6.9223 15 1 7.5741 -4.1908 6.9644 16 6 5.7699 -4.4308 8.0957 17 7 4.4707 -4.6353 8.0445 18 14 6.6206 -4.2385 9.7476 19 1 6.6306 -2.8050 10.1353 20 1 5.8907 -5.0240 10.7748 21 1 8.0170 -4.7334 9.6458 22 7 5.3513 -5.7710 2.7597 23 7 4.5734 -5.5301 1.7638 24 6 4.3007 -2.3336 0.1441 25 6 5.6797 -2.3195 0.0150 26 6 6.3306 -1.1684 -0.3838 27 6 5.6086 -0.0199 -0.6532 28 6 4.2337 -0.0271 -0.5318 29 6 3.5767 -1.1841 -0.1284 30 1 -0.3633 -0.4328 0.9321 31 1 -0.3633 1.0235 -0.0912 32 1 -0.3633 -0.5909 -0.8408 33 1 1.4253 -2.9474 -0.8322 34 1 0.4534 -2.2634 0.4976 35 1 1.6971 -4.2435 1.3029 36 1 2.3301 -2.7740 2.0853 37 1 5.2676 -2.5665 2.6971 38 1 7.4211 -5.2070 4.4717 39 1 7.1478 -3.4493 4.4078 40 1 4.9268 -4.6496 5.6736 41 1 3.9549 -4.6857 8.8644 42 1 6.2487 -3.2128 0.2268 43 1 7.4062 -1.1638 -0.4811 44 1 6.1196 0.8801 -0.9618 45 1 3.6683 0.8677 -0.7465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262383285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:40 Heat of formation + Delta-G solvation = 130.702104 kcal Electronic energy + Delta-G solvation = -29473.819607 eV Core-core repulsion = 25494.867682 eV Total energy + Delta-G solvation = -3978.951925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -43.10335 -41.52208 -39.08867 -37.16922 -35.51770 -34.60069 -32.10789 -31.74272 -31.46455 -30.80814 -29.84656 -29.18328 -26.44569 -25.66648 -23.87980 -23.46623 -22.80811 -22.23749 -20.97165 -20.57058 -19.63771 -17.97675 -17.57941 -17.34306 -16.98188 -16.58481 -16.01953 -15.82975 -15.09239 -14.84942 -14.65392 -14.44533 -14.02235 -13.99576 -13.91318 -13.66249 -13.51871 -13.21818 -13.08809 -12.91327 -12.81656 -12.61627 -12.51150 -11.96897 -11.91948 -11.87316 -11.36807 -11.23133 -10.88171 -10.78356 -10.62024 -10.44849 -10.07386 -9.95587 -9.86479 -9.70061 -9.10069 -8.85836 -8.79428 -8.31524 -6.88764 -5.71488 -3.00770 0.80003 1.06376 1.83802 2.08458 2.22667 2.41046 2.93491 3.47590 3.47723 3.52558 3.54694 3.81211 3.94973 4.00748 4.23842 4.50981 4.58761 4.62218 4.65513 4.73556 4.75757 4.81592 4.85222 4.89162 4.98793 5.10951 5.20996 5.25860 5.31985 5.38482 5.49910 5.53183 5.66924 5.69748 5.80014 5.89344 6.05965 6.15046 6.20732 6.28836 6.43891 6.69370 6.72756 6.75543 6.78919 6.83015 7.51738 7.73678 8.45848 8.86248 9.57671 10.13585 10.49733 11.51405 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.002863 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.159466 B = 9777.051884 C =10186.764182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.517 6.517 4 N -0.559 5.559 5 C 0.108 3.892 6 C -0.150 4.150 7 C 0.202 3.798 8 H 0.121 0.879 9 N -0.295 5.295 10 C -0.032 4.032 11 C -0.006 4.006 12 C 0.233 3.767 13 N -0.725 5.725 14 C -0.238 4.238 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 N -0.251 5.251 23 N -0.097 5.097 24 C -0.146 4.146 25 C -0.078 4.078 26 C -0.137 4.137 27 C -0.087 4.087 28 C -0.153 4.153 29 C 0.176 3.824 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.182 0.818 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 9.434 -24.779 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.393 6.393 4 N -0.283 5.283 5 C -0.015 4.015 6 C -0.189 4.189 7 C 0.100 3.900 8 H 0.139 0.861 9 N -0.089 5.089 10 C -0.182 4.182 11 C -0.144 4.144 12 C 0.104 3.896 13 N -0.370 5.370 14 C -0.369 4.369 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.207 1.207 22 N -0.119 5.119 23 N -0.075 5.075 24 C -0.150 4.150 25 C -0.096 4.096 26 C -0.156 4.156 27 C -0.105 4.105 28 C -0.173 4.173 29 C 0.082 3.918 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.199 0.801 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.328 8.601 -25.165 27.868 hybrid contribution 0.295 0.986 1.351 1.699 sum -8.033 9.587 -23.814 26.899 Atomic orbital electron populations 1.22005 0.90327 1.06258 1.04761 1.21049 0.91063 0.82253 0.75066 1.90563 1.69706 1.31323 1.47708 1.45866 1.05052 1.07840 1.69589 1.22018 0.96566 0.82585 1.00311 1.22334 0.94133 1.02340 1.00086 1.20039 0.88922 0.91847 0.89217 0.86144 1.47272 1.32869 1.05880 1.22873 1.23277 1.00124 1.01201 0.93638 1.22431 1.03218 0.88247 1.00467 1.18940 0.90743 0.98716 0.81222 1.42294 1.07651 1.87445 0.99620 1.19237 0.92672 1.41388 0.83637 0.90899 1.24749 0.95640 1.02785 0.97759 1.69681 1.05095 1.56526 1.26831 0.86159 0.78447 0.77438 0.83968 1.21755 1.21805 1.20658 1.75091 1.08560 1.24659 1.03562 1.78261 1.17412 0.95598 1.16224 1.19201 0.94283 0.93521 1.07980 1.20926 0.92542 0.98954 0.97215 1.21122 1.00363 0.92813 1.01308 1.21223 0.93685 0.98108 0.97510 1.22135 0.95158 0.99068 1.00925 1.17523 0.81992 0.93953 0.98334 0.88567 0.88271 0.88923 0.89503 0.87526 0.87861 0.89271 0.80063 0.94326 0.94558 0.78144 0.93569 0.85679 0.85507 0.85351 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 8.74 36.01 0.31 -0.40 16 2 C 0.51 4.44 7.67 -10.98 -0.08 4.36 16 3 O -0.52 -6.33 13.76 5.55 0.08 -6.25 16 4 N -0.56 -4.65 2.97 -112.86 -0.34 -4.98 16 5 C 0.11 0.56 6.17 -3.59 -0.02 0.54 16 6 C -0.15 -1.22 5.70 -26.58 -0.15 -1.37 16 7 C 0.20 2.04 3.20 -69.21 -0.22 1.82 16 8 H 0.12 1.02 8.14 -51.92 -0.42 0.60 16 9 N -0.30 -4.21 2.77 -56.01 -0.15 -4.36 16 10 C -0.03 -0.51 9.23 -17.05 -0.16 -0.67 16 11 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 12 C 0.23 5.04 6.82 -5.19 -0.04 5.00 16 13 N -0.73 -19.36 5.59 -61.09 -0.34 -19.70 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 2.00 7.83 -52.48 -0.41 1.58 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 18 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 N -0.25 -5.12 12.41 33.29 0.41 -4.71 16 23 N -0.10 -1.68 13.17 60.35 0.79 -0.89 16 24 C -0.15 -1.52 4.98 -104.45 -0.52 -2.04 16 25 C -0.08 -0.83 8.09 -39.52 -0.32 -1.15 16 26 C -0.14 -1.33 10.04 -39.60 -0.40 -1.73 16 27 C -0.09 -0.83 10.05 -39.63 -0.40 -1.23 16 28 C -0.15 -1.67 8.87 -39.36 -0.35 -2.02 16 29 C 0.18 1.84 6.31 -83.63 -0.53 1.32 16 30 H 0.10 0.27 7.58 -51.93 -0.39 -0.12 16 31 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.09 0.17 8.08 -51.93 -0.42 -0.25 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.11 0.28 6.26 -51.93 -0.33 -0.05 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.18 2.67 7.70 -52.48 -0.40 2.27 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.39 11.05 7.66 -40.82 -0.31 10.74 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.13 1.43 7.17 -52.48 -0.38 1.06 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.17 1.97 4.97 -53.63 -0.27 1.70 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -36.60 371.23 -7.77 -44.37 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.85 Total: 7.17 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.66 Total: -5.73 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 1.10 Total: -62.92 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: 0.08 Total: -6.25 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.60 -7.77 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262383285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.069 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds