Wall clock time and date at job start Sat Apr 11 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21287 * 119.99624 * 2 1 4 4 N 1.34779 * 119.99895 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.55642 * 353.90069 * 4 2 1 6 6 C 1.53429 * 107.78631 * 224.63756 * 5 4 2 7 7 C 1.52853 * 108.85758 * 296.76873 * 6 5 4 8 8 H 1.09007 * 109.24132 * 291.16142 * 7 6 5 9 9 N 1.46501 * 109.26930 * 171.67244 * 7 6 5 10 10 C 1.35313 * 125.86670 * 273.69763 * 9 7 6 11 11 C 1.35345 * 106.17427 * 179.90851 * 10 9 7 12 12 C 1.50705 * 126.74997 * 180.12699 * 11 10 9 13 13 N 1.46500 * 109.47229 * 95.29276 * 12 11 10 14 14 C 1.36931 * 119.99932 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00199 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00148 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00103 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47064 * 89.99650 * 18 16 14 20 20 H 1.48496 * 109.47410 * 209.99441 * 18 16 14 21 21 H 1.48500 * 109.47121 * 329.99883 * 18 16 14 22 22 N 1.33770 * 106.49976 * 0.34787 * 11 10 9 23 23 N 1.28640 * 108.88463 * 359.77740 * 22 11 10 24 24 C 1.50590 * 110.50108 * 51.40517 * 7 6 5 25 25 C 1.38511 * 118.92617 * 159.47278 * 24 7 6 26 26 C 1.38119 * 120.30271 * 179.79781 * 25 24 7 27 27 C 1.38308 * 120.15292 * 0.19420 * 26 25 24 28 28 C 1.38031 * 119.90425 * 359.56649 * 27 26 25 29 29 C 1.38563 * 121.50529 * 339.32779 * 24 7 6 30 30 H 1.09000 * 109.46796 * 245.09429 * 1 2 3 31 31 H 1.08992 * 109.47271 * 5.09315 * 1 2 3 32 32 H 1.09004 * 109.47086 * 125.09674 * 1 2 3 33 33 H 1.08993 * 109.79587 * 105.06480 * 5 4 2 34 34 H 1.08996 * 109.84042 * 344.23241 * 5 4 2 35 35 H 1.09000 * 109.57263 * 176.95575 * 6 5 4 36 36 H 1.08998 * 109.67611 * 56.64065 * 6 5 4 37 37 H 1.08004 * 126.91293 * 0.02562 * 10 9 7 38 38 H 1.09000 * 109.46612 * 215.29111 * 12 11 10 39 39 H 1.08992 * 109.47064 * 335.28825 * 12 11 10 40 40 H 0.96998 * 119.99904 * 359.97438 * 13 12 11 41 41 H 0.96992 * 120.00451 * 180.02562 * 17 16 14 42 42 H 1.08004 * 119.85389 * 359.81692 * 25 24 7 43 43 H 1.08001 * 119.92639 * 179.91537 * 26 25 24 44 44 H 1.07998 * 120.04810 * 179.80489 * 27 26 25 45 45 H 1.08001 * 119.98274 * 180.29785 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4648 -2.4432 0.1333 6 6 2.2336 -3.3087 1.1404 7 6 3.6226 -3.6068 0.5765 8 1 3.5268 -4.2726 -0.2813 9 7 4.4329 -4.2602 1.6074 10 6 5.1668 -3.6324 2.5551 11 6 5.7471 -4.6089 3.2910 12 6 6.6633 -4.4235 4.4730 13 7 5.8844 -4.4996 5.7114 14 6 6.5079 -4.3581 6.9223 15 1 7.5741 -4.1908 6.9644 16 6 5.7699 -4.4308 8.0957 17 7 4.4707 -4.6353 8.0445 18 14 6.6206 -4.2385 9.7476 19 1 6.6306 -2.8050 10.1353 20 1 5.8907 -5.0240 10.7748 21 1 8.0170 -4.7334 9.6458 22 7 5.3513 -5.7710 2.7597 23 7 4.5734 -5.5301 1.7638 24 6 4.3007 -2.3336 0.1441 25 6 5.6797 -2.3195 0.0150 26 6 6.3306 -1.1684 -0.3838 27 6 5.6086 -0.0199 -0.6532 28 6 4.2337 -0.0271 -0.5318 29 6 3.5767 -1.1841 -0.1284 30 1 -0.3633 -0.4328 0.9321 31 1 -0.3633 1.0235 -0.0912 32 1 -0.3633 -0.5909 -0.8408 33 1 1.4253 -2.9474 -0.8322 34 1 0.4534 -2.2634 0.4976 35 1 1.6971 -4.2435 1.3029 36 1 2.3301 -2.7740 2.0853 37 1 5.2676 -2.5665 2.6971 38 1 7.4211 -5.2070 4.4717 39 1 7.1478 -3.4493 4.4078 40 1 4.9268 -4.6496 5.6736 41 1 3.9549 -4.6857 8.8644 42 1 6.2487 -3.2128 0.2268 43 1 7.4062 -1.1638 -0.4811 44 1 6.1196 0.8801 -0.9618 45 1 3.6683 0.8677 -0.7465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262383285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:34 Heat of formation + Delta-G solvation = 106.081319 kcal Electronic energy + Delta-G solvation = -29474.887244 eV Core-core repulsion = 25494.867682 eV Total energy + Delta-G solvation = -3980.019562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -44.40874 -42.24152 -39.84980 -37.91176 -36.91806 -36.08057 -33.84490 -32.62886 -32.32564 -31.82863 -31.36452 -29.76891 -27.79205 -27.00387 -24.81691 -24.54159 -24.21461 -23.34794 -22.23938 -21.63286 -20.32259 -19.41423 -18.71053 -18.31647 -18.04994 -17.34945 -17.01330 -16.78323 -16.52677 -16.02685 -15.75855 -15.59475 -15.47965 -15.10422 -14.76673 -14.57874 -14.53804 -14.37059 -14.15108 -13.89610 -13.74186 -13.36763 -13.17047 -13.06170 -13.04242 -12.78412 -12.69214 -12.62104 -12.58225 -12.16319 -12.09622 -11.89692 -11.81693 -11.28341 -11.11372 -10.96919 -10.62085 -10.25105 -9.91205 -9.04250 -9.03417 -7.94165 -5.24771 0.01964 0.25668 0.55041 1.30366 1.42745 1.49005 1.50248 1.51589 1.60509 1.65743 2.58718 2.68757 3.01454 3.31592 3.36414 3.40471 3.46968 3.62325 3.78940 3.89878 3.94692 4.09019 4.15150 4.18730 4.22779 4.22866 4.32155 4.34621 4.48543 4.51995 4.54793 4.62756 4.69214 4.81579 4.85530 4.93570 4.98828 5.09586 5.12488 5.16104 5.29386 5.41998 5.49823 5.51380 5.61034 5.96786 6.15917 6.25389 6.89675 7.32256 7.46923 8.02513 8.29344 9.29826 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.002863 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.159466 B = 9777.051884 C =10186.764182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.506 3.494 3 O -0.562 6.562 4 N -0.561 5.561 5 C 0.109 3.891 6 C -0.147 4.147 7 C 0.194 3.806 8 H 0.142 0.858 9 N -0.275 5.275 10 C -0.013 4.013 11 C -0.030 4.030 12 C 0.236 3.764 13 N -0.738 5.738 14 C -0.245 4.245 15 H 0.083 0.917 16 C -0.076 4.076 17 N -0.972 5.972 18 Si 0.979 3.021 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.267 1.267 22 N -0.291 5.291 23 N -0.098 5.098 24 C -0.151 4.151 25 C -0.088 4.088 26 C -0.140 4.140 27 C -0.087 4.087 28 C -0.170 4.170 29 C 0.171 3.829 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.196 0.804 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 10.013 -25.900 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.441 6.441 4 N -0.284 5.284 5 C -0.012 4.012 6 C -0.186 4.186 7 C 0.094 3.906 8 H 0.160 0.840 9 N -0.069 5.069 10 C -0.165 4.165 11 C -0.168 4.168 12 C 0.108 3.892 13 N -0.381 5.381 14 C -0.377 4.377 15 H 0.101 0.899 16 C -0.268 4.268 17 N -0.623 5.623 18 Si 0.807 3.193 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.192 1.192 22 N -0.158 5.158 23 N -0.076 5.076 24 C -0.155 4.155 25 C -0.107 4.107 26 C -0.159 4.159 27 C -0.105 4.105 28 C -0.190 4.190 29 C 0.075 3.925 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.213 0.787 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.202 0.798 41 H 0.060 0.940 42 H 0.134 0.866 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.165 9.161 -26.338 29.353 hybrid contribution 0.549 0.862 1.543 1.851 sum -8.615 10.023 -24.795 28.098 Atomic orbital electron populations 1.22073 0.86522 1.07073 1.06916 1.21964 0.92828 0.81550 0.73749 1.90545 1.70922 1.32899 1.49759 1.46097 1.04317 1.09033 1.68956 1.22328 0.97085 0.80803 1.00956 1.22347 0.93209 1.03244 0.99776 1.20538 0.89271 0.91945 0.88874 0.84004 1.47578 1.31733 1.05006 1.22554 1.23290 0.99058 1.01167 0.93000 1.22162 1.04602 0.89156 1.00913 1.18946 0.90675 0.99212 0.80387 1.42483 1.07279 1.87450 1.00884 1.19696 0.93273 1.40080 0.84629 0.89864 1.25635 0.96334 1.03300 1.01527 1.69852 1.06679 1.58302 1.27430 0.85059 0.77794 0.77359 0.79043 1.21086 1.22325 1.19201 1.75034 1.10101 1.25710 1.04974 1.78147 1.17035 0.96885 1.15574 1.19172 0.94212 0.93633 1.08454 1.20961 0.92842 0.99016 0.97883 1.21319 1.01281 0.92423 1.00886 1.21470 0.93430 0.98845 0.96782 1.22215 0.95804 0.99135 1.01817 1.17640 0.83400 0.93546 0.97866 0.86737 0.88476 0.85878 0.86745 0.84130 0.86706 0.91686 0.78749 0.94917 0.92662 0.79800 0.94034 0.86649 0.83853 0.83493 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 8.74 71.24 0.62 -0.23 16 2 C 0.51 7.93 7.67 87.66 0.67 8.60 16 3 O -0.56 -13.72 13.76 -3.05 -0.04 -13.76 16 4 N -0.56 -8.19 2.97 -629.36 -1.87 -10.06 16 5 C 0.11 0.76 6.17 86.44 0.53 1.29 16 6 C -0.15 -2.06 5.70 30.69 0.18 -1.89 16 7 C 0.19 3.58 3.20 44.16 0.14 3.72 16 8 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 9 N -0.28 -7.61 2.77 -331.13 -0.92 -8.53 16 10 C -0.01 -0.43 9.23 83.49 0.77 0.35 16 11 C -0.03 -1.19 6.61 41.60 0.28 -0.91 16 12 C 0.24 10.29 6.82 85.63 0.58 10.87 16 13 N -0.74 -39.98 5.59 -347.18 -1.94 -41.93 16 14 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 15 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 16 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 17 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 18 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 N -0.29 -12.02 12.41 -48.60 -0.60 -12.62 16 23 N -0.10 -3.37 13.17 37.02 0.49 -2.89 16 24 C -0.15 -2.96 4.98 -19.76 -0.10 -3.06 16 25 C -0.09 -1.82 8.09 22.31 0.18 -1.64 16 26 C -0.14 -2.59 10.04 22.26 0.22 -2.36 16 27 C -0.09 -1.61 10.05 22.24 0.22 -1.38 16 28 C -0.17 -3.65 8.87 22.41 0.20 -3.45 16 29 C 0.17 3.39 6.31 38.08 0.24 3.63 16 30 H 0.11 0.21 7.58 -2.39 -0.02 0.20 16 31 H 0.10 0.59 8.12 -2.39 -0.02 0.57 16 32 H 0.12 -0.10 8.08 -2.39 -0.02 -0.12 16 33 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.14 0.07 6.26 -2.39 -0.01 0.05 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.20 5.61 7.70 -2.91 -0.02 5.59 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.37 21.85 7.66 -92.71 -0.71 21.14 16 41 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.12 2.59 7.17 -2.91 -0.02 2.57 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.16 3.78 4.97 -21.09 -0.10 3.67 16 Total: -1.00 -81.66 371.23 3.71 -77.96 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.23 Total: 27.68 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.05 Total: -3.76 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -4.56 Total: -137.15 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.04 Total: -13.76 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -81.66 3.71 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262383285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.036 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds