Wall clock time and date at job start Sat Apr 11 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47084 * 240.00161 * 2 1 3 5 5 O 1.21286 * 119.99853 * 240.00416 * 4 2 1 6 6 N 1.34779 * 120.00228 * 59.99677 * 4 2 1 7 7 C 1.46499 * 119.99779 * 180.02562 * 6 4 2 8 8 C 1.53001 * 117.49887 * 223.62478 * 7 6 4 9 9 C 1.53000 * 60.00005 * 252.50970 * 8 7 6 10 10 N 1.46893 * 109.46969 * 119.99954 * 2 1 3 11 11 C 1.48533 * 111.00155 * 306.56720 * 10 2 1 12 12 C 1.54938 * 103.22774 * 200.28117 * 11 10 2 13 13 C 1.54601 * 102.92257 * 37.41374 * 12 11 10 14 14 H 1.08995 * 110.38954 * 219.08423 * 13 12 11 15 15 N 1.46499 * 110.30880 * 96.96073 * 13 12 11 16 16 C 1.34773 * 120.00339 * 89.28275 * 15 13 12 17 17 O 1.21290 * 119.99540 * 0.02562 * 16 15 13 18 18 C 1.50690 * 120.00233 * 179.97438 * 16 15 13 19 19 S 1.81001 * 109.47226 * 180.02562 * 18 16 15 20 20 C 1.76206 * 100.00082 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00074 * 0.02562 * 20 19 18 22 22 C 1.38794 * 119.99851 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00370 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99929 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47082 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47472 * 119.99779 * 24 22 20 27 27 H 1.48503 * 109.47229 * 240.00099 * 24 22 20 28 28 C 1.47910 * 110.99989 * 189.17124 * 10 2 1 29 29 H 1.08998 * 109.47145 * 185.76386 * 1 2 3 30 30 H 1.08997 * 109.47127 * 305.76992 * 1 2 3 31 31 H 1.09004 * 109.47233 * 65.76626 * 1 2 3 32 32 H 0.96989 * 120.00028 * 0.02562 * 6 4 2 33 33 H 1.09003 * 115.55429 * 9.33285 * 7 6 4 34 34 H 1.09002 * 117.49726 * 359.97438 * 8 7 6 35 35 H 1.09000 * 117.50273 * 145.02348 * 8 7 6 36 36 H 1.08995 * 117.49974 * 252.50381 * 9 8 7 37 37 H 1.09009 * 117.49665 * 107.48773 * 9 8 7 38 38 H 1.09008 * 110.66654 * 318.71463 * 11 10 2 39 39 H 1.08995 * 110.67220 * 81.67775 * 11 10 2 40 40 H 1.09004 * 110.72201 * 279.05323 * 12 11 10 41 41 H 1.09006 * 110.72394 * 155.77184 * 12 11 10 42 42 H 0.97002 * 119.99559 * 269.28493 * 15 13 12 43 43 H 1.09000 * 109.47412 * 60.00288 * 18 16 15 44 44 H 1.09005 * 109.47054 * 300.00198 * 18 16 15 45 45 H 0.96995 * 120.00471 * 179.97438 * 23 22 20 46 46 H 1.08992 * 109.91487 * 26.49121 * 28 10 2 47 47 H 1.09000 * 110.07854 * 265.28639 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9409 -3.6507 8 6 2.7317 -0.0788 -4.7949 9 6 1.3819 -0.7849 -4.9376 10 7 2.0197 -0.6925 1.1994 11 6 1.4182 -0.1166 2.4294 12 6 2.3956 -0.5644 3.5451 13 6 3.7766 -0.4568 2.8586 14 1 4.4149 -1.2884 3.1571 15 7 4.4139 0.8186 3.1955 16 6 5.1965 0.9130 4.2886 17 8 5.3735 -0.0582 4.9933 18 6 5.8525 2.2247 4.6348 19 16 6.8310 2.0299 6.1450 20 6 7.4666 3.6650 6.3108 21 1 7.2071 4.4214 5.5849 22 6 8.2998 3.9811 7.3748 23 7 8.6157 3.0594 8.2598 24 14 8.9731 5.7146 7.5510 25 1 8.4727 6.5558 6.4341 26 1 8.5251 6.2906 8.8443 27 1 10.4571 5.6755 7.5140 28 6 3.4816 -0.5245 1.3487 29 1 -0.3633 -1.0224 0.1032 30 1 -0.3633 0.6007 0.8338 31 1 -0.3634 0.4218 -0.9371 32 1 1.1494 0.5388 -2.5436 33 1 2.6783 -1.9017 -3.4743 34 1 2.7216 1.0025 -4.6579 35 1 3.5689 -0.4722 -5.3715 36 1 1.3312 -1.6429 -5.6080 37 1 0.4842 -0.1682 -4.8942 38 1 1.3793 0.9709 2.3657 39 1 0.4227 -0.5266 2.5992 40 1 2.1931 -1.5924 3.8454 41 1 2.3372 0.1075 4.4015 42 1 4.2726 1.5952 2.6316 43 1 5.0862 2.9835 4.7933 44 1 6.5044 2.5319 3.8170 45 1 9.1984 3.2801 9.0032 46 1 3.8004 0.3993 0.8663 47 1 4.0029 -1.3734 0.9063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265271114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:08 Heat of formation + Delta-G solvation = -62.606507 kcal Electronic energy + Delta-G solvation = -26871.259395 eV Core-core repulsion = 22987.076180 eV Total energy + Delta-G solvation = -3884.183215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.53214 -40.72887 -39.33484 -37.90890 -35.82087 -34.59077 -34.23531 -32.99482 -30.92207 -30.31942 -28.42109 -27.61466 -25.69120 -23.27416 -23.22362 -22.49517 -22.11678 -21.42222 -20.95672 -19.85250 -18.31325 -17.92113 -17.85377 -17.41686 -17.03240 -16.88587 -16.38639 -16.14350 -15.96828 -15.55818 -15.33292 -15.18663 -14.70500 -14.52964 -14.34682 -14.03710 -13.75491 -13.66485 -13.40070 -13.18117 -13.16448 -12.92540 -12.76830 -12.70111 -12.56776 -12.54725 -12.40977 -12.34840 -12.22204 -11.93241 -11.70822 -11.46723 -11.16342 -10.96641 -10.78146 -10.27343 -10.16487 -9.74359 -9.43406 -8.67191 -8.35075 -6.13252 1.25926 1.41198 1.46382 1.56694 1.57440 1.58747 1.95382 2.20908 2.27262 2.93624 2.99177 2.99243 3.31625 3.43067 3.61196 3.75942 3.83140 3.94491 3.98458 4.05165 4.07217 4.07851 4.16645 4.23380 4.29271 4.38176 4.49165 4.56712 4.73509 4.76747 4.80592 4.83316 4.91325 4.98260 5.01134 5.02914 5.11176 5.20687 5.23150 5.41048 5.41839 5.52161 5.79755 5.88567 6.19684 6.45759 6.54727 7.06277 7.22085 7.26775 8.74409 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.001903 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.390925 B =14707.172529 C =15501.222416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.092 0.908 4 C 0.517 3.483 5 O -0.565 6.565 6 N -0.690 5.690 7 C 0.054 3.946 8 C -0.188 4.188 9 C -0.171 4.171 10 N -0.509 5.509 11 C 0.047 3.953 12 C -0.131 4.131 13 C 0.134 3.866 14 H 0.071 0.929 15 N -0.705 5.705 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.128 4.128 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.275 1.275 28 C 0.051 3.949 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.413 0.587 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.061 0.939 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 -0.861 -27.886 35.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.110 0.890 4 C 0.304 3.696 5 O -0.443 6.443 6 N -0.342 5.342 7 C -0.053 4.053 8 C -0.227 4.227 9 C -0.209 4.209 10 N -0.234 5.234 11 C -0.080 4.080 12 C -0.170 4.170 13 C 0.028 3.972 14 H 0.089 0.911 15 N -0.360 5.360 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.078 4.078 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.251 0.749 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.389 -3.780 -26.571 34.319 hybrid contribution 0.657 2.987 -0.533 3.104 sum -20.732 -0.793 -27.103 34.133 Atomic orbital electron populations 1.21874 0.89660 1.03549 1.04650 1.21912 0.98920 0.96428 0.88233 0.89042 1.20924 0.79355 0.84196 0.85171 1.90707 1.38861 1.27696 1.87014 1.45232 1.53203 1.31810 1.03936 1.21563 1.04205 0.98240 0.81254 1.23488 0.98281 0.99860 1.01067 1.23452 0.95732 1.03847 0.97836 1.64606 1.03920 1.53198 1.01688 1.23288 0.98880 0.98527 0.87256 1.22864 0.93416 1.02685 0.98049 1.21752 0.94599 0.86102 0.94727 0.91064 1.45876 1.49389 1.13646 1.27052 1.20089 0.78004 0.89136 0.80573 1.90703 1.62236 1.39847 1.51292 1.23365 1.03144 0.98331 1.03119 1.85625 1.60097 1.17776 1.28991 1.23239 1.35072 0.96167 1.14835 0.89834 1.26141 0.95670 1.03235 0.94195 1.70188 1.35168 1.35767 1.13681 0.84896 0.77825 0.76472 0.78683 1.17933 1.19889 1.20039 1.22938 0.89880 1.01760 0.93202 0.92226 0.89626 0.89317 0.74668 0.87075 0.87525 0.87906 0.87318 0.86817 0.91586 0.87970 0.90331 0.91049 0.74930 0.86968 0.87324 0.92000 0.92040 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.66 71.98 0.62 -0.34 16 2 C 0.06 0.70 2.26 44.17 0.10 0.80 16 3 H 0.09 0.75 7.84 -2.39 -0.02 0.74 16 4 C 0.52 8.93 6.95 87.66 0.61 9.54 16 5 O -0.57 -15.54 14.60 -3.05 -0.04 -15.59 16 6 N -0.69 -7.37 5.42 -442.52 -2.40 -9.77 16 7 C 0.05 0.65 6.43 44.99 0.29 0.94 16 8 C -0.19 -1.50 10.46 30.59 0.32 -1.18 16 9 C -0.17 -1.08 10.46 30.59 0.32 -0.76 16 10 N -0.51 -9.10 4.81 -862.23 -4.15 -13.24 16 11 C 0.05 0.70 5.17 86.65 0.45 1.14 16 12 C -0.13 -2.84 6.78 31.80 0.22 -2.63 16 13 C 0.13 3.35 3.34 45.87 0.15 3.50 16 14 H 0.07 2.25 7.56 -2.39 -0.02 2.23 16 15 N -0.71 -18.07 5.06 -438.38 -2.22 -20.28 16 16 C 0.54 19.87 7.85 87.65 0.69 20.56 16 17 O -0.56 -26.52 15.51 -3.06 -0.05 -26.57 16 18 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 19 S -0.15 -8.47 20.57 -56.49 -1.16 -9.64 16 20 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 24 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 C 0.05 1.08 5.50 86.44 0.48 1.55 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.39 7.15 -2.39 -0.02 0.37 16 31 H 0.09 0.18 7.41 -2.38 -0.02 0.17 16 32 H 0.42 1.58 8.18 -92.72 -0.76 0.83 16 33 H 0.11 1.96 7.40 -2.39 -0.02 1.94 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.07 0.75 8.02 -2.38 -0.02 0.73 16 39 H 0.10 1.24 7.77 -2.39 -0.02 1.22 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.71 8.05 -2.38 -0.02 1.69 16 42 H 0.41 7.56 8.33 -92.71 -0.77 6.79 16 43 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.06 1.10 7.07 -2.39 -0.02 1.08 16 47 H 0.08 2.05 7.36 -2.39 -0.02 2.03 16 Total: -1.00 -83.88 398.45 -2.45 -86.33 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.54 Total: 19.91 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.79 Total: -0.78 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -8.48 Total: -99.22 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.09 Total: -42.15 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.64 kcal Total: -83.88 -2.45 -86.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265271114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.724 kcal (2) G-P(sol) polarization free energy of solvation -83.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds