Wall clock time and date at job start Sat Apr 11 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.50704 * 109.46859 * 239.99936 * 2 1 3 5 5 N 1.34769 * 120.00241 * 59.99971 * 4 2 1 6 6 O 1.21289 * 119.99841 * 240.00319 * 4 2 1 7 7 N 1.46900 * 109.47326 * 120.00266 * 2 1 3 8 8 C 1.46812 * 111.00086 * 179.97438 * 7 2 1 9 9 C 1.53266 * 109.44377 * 170.79642 * 8 7 2 10 10 C 1.53220 * 108.62074 * 55.59279 * 9 8 7 11 11 C 1.52737 * 117.84694 * 162.98919 * 10 9 8 12 12 C 1.52768 * 117.79166 * 93.99063 * 10 9 8 13 13 H 1.09001 * 117.53546 * 215.28217 * 12 10 9 14 14 N 1.46498 * 117.50426 * 0.35722 * 12 10 9 15 15 C 1.34777 * 119.99828 * 204.65468 * 14 12 10 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46850 * 90.00589 * 23 21 19 25 25 H 1.48498 * 109.47329 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.47220 * 330.01003 * 23 21 19 27 27 C 1.53218 * 114.74191 * 308.58564 * 10 9 8 28 28 C 1.46817 * 111.00204 * 55.29859 * 7 2 1 29 29 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47037 * 299.99737 * 1 2 3 31 31 H 1.08994 * 109.47519 * 59.99723 * 1 2 3 32 32 H 0.97007 * 119.99779 * 0.02562 * 5 4 2 33 33 H 0.96998 * 120.00645 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47523 * 50.80962 * 8 7 2 35 35 H 1.08995 * 109.47325 * 290.78633 * 8 7 2 36 36 H 1.08998 * 109.61849 * 295.85135 * 9 8 7 37 37 H 1.09006 * 109.61306 * 175.33085 * 9 8 7 38 38 H 1.09000 * 117.50391 * 144.78561 * 11 10 9 39 39 H 1.08996 * 117.52582 * 359.72601 * 11 10 9 40 40 H 0.97001 * 120.00384 * 24.93914 * 14 12 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.61485 * 171.15444 * 27 10 9 45 45 H 1.09002 * 109.61022 * 291.66914 * 27 10 9 46 46 H 1.08999 * 109.46816 * 309.19574 * 28 7 2 47 47 H 1.08988 * 109.47392 * 69.20997 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 7 1.7067 -0.2501 -2.4546 6 8 2.7295 -1.6966 -1.1192 7 7 2.0197 -0.6925 1.1994 8 6 3.4873 -0.7126 1.2330 9 6 3.9594 -1.2324 2.5954 10 6 3.3239 -2.6045 2.8425 11 6 3.9372 -3.4902 3.9251 12 6 4.1268 -3.8428 2.4480 13 1 3.5747 -4.6988 2.0600 14 7 5.4549 -3.6312 1.8669 15 6 5.9966 -4.5691 1.0648 16 8 5.3826 -5.5859 0.8200 17 6 7.3654 -4.3543 0.4720 18 16 7.8103 -5.7796 -0.5510 19 6 9.4061 -5.2746 -1.1017 20 1 9.8112 -4.3250 -0.7849 21 6 10.1429 -6.0979 -1.9419 22 7 9.6494 -7.2556 -2.3277 23 14 11.8344 -5.5623 -2.5263 24 1 12.8632 -6.0382 -1.5669 25 1 12.1017 -6.1427 -3.8668 26 1 11.8830 -4.0805 -2.6097 27 6 1.8036 -2.6498 2.6571 28 6 1.4594 -2.0465 1.2908 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5435 33 1 2.0302 -0.7071 -3.2466 34 1 3.8682 0.2967 1.0773 35 1 3.8598 -1.3674 0.4453 36 1 3.6505 -0.5398 3.3783 37 1 5.0453 -1.3269 2.5946 38 1 3.2601 -4.1139 4.5087 39 1 4.8008 -3.1014 4.4646 40 1 5.9460 -2.8180 2.0627 41 1 7.3579 -3.4543 -0.1428 42 1 8.0949 -4.2403 1.2740 43 1 10.1641 -7.8307 -2.9151 44 1 1.4608 -3.6838 2.6973 45 1 1.3215 -2.0711 3.4450 46 1 0.3764 -2.0000 1.1767 47 1 1.8817 -2.6685 0.5017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266366165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:27:18 Heat of formation + Delta-G solvation = -72.614629 kcal Electronic energy + Delta-G solvation = -28140.429360 eV Core-core repulsion = 24255.812160 eV Total energy + Delta-G solvation = -3884.617200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72302 -40.84361 -39.48778 -37.33902 -35.07935 -34.62037 -34.40421 -32.68479 -31.87530 -30.57257 -28.94048 -27.70002 -25.47372 -24.10435 -23.49613 -22.87643 -21.73233 -20.93032 -20.09727 -19.65738 -18.45544 -17.97234 -17.69347 -17.31618 -16.90932 -16.52949 -16.40878 -16.21457 -16.00498 -15.82056 -15.40571 -15.02657 -14.98466 -14.78361 -14.48468 -13.97075 -13.83104 -13.68025 -13.29060 -13.27929 -13.19802 -13.03690 -12.91111 -12.64989 -12.61992 -12.49138 -12.32824 -11.94542 -11.78194 -11.65219 -11.42805 -11.25315 -11.16688 -11.05866 -10.66939 -10.58444 -10.32276 -9.64501 -9.14062 -8.70745 -8.37085 -6.16188 1.22332 1.40703 1.43144 1.51826 1.54958 1.60337 2.17818 2.24863 2.61783 2.78918 2.95485 2.96824 3.27807 3.66283 3.71576 3.82329 3.87213 3.92391 3.99048 4.05229 4.21179 4.23294 4.36504 4.41709 4.48378 4.55158 4.62418 4.74666 4.80756 4.82946 4.88732 4.91428 4.96999 5.01168 5.10098 5.18010 5.30737 5.32430 5.38513 5.41600 5.51836 5.87563 6.00617 6.05909 6.17124 6.43796 6.47889 7.03365 7.19797 7.35844 8.72521 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.002750 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.627010 B =10180.907808 C =11435.940998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 H 0.132 0.868 4 C 0.474 3.526 5 N -0.840 5.840 6 O -0.585 6.585 7 N -0.498 5.498 8 C 0.039 3.961 9 C -0.071 4.071 10 C -0.112 4.112 11 C -0.160 4.160 12 C 0.059 3.941 13 H 0.100 0.900 14 N -0.680 5.680 15 C 0.535 3.465 16 O -0.567 6.567 17 C -0.127 4.127 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.258 1.258 27 C -0.072 4.072 28 C 0.042 3.958 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.412 0.588 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.272 0.728 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.706 24.026 9.807 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 H 0.150 0.850 4 C 0.258 3.742 5 N -0.404 5.404 6 O -0.465 6.465 7 N -0.221 5.221 8 C -0.088 4.088 9 C -0.108 4.108 10 C -0.114 4.114 11 C -0.199 4.199 12 C -0.048 4.048 13 H 0.118 0.882 14 N -0.332 5.332 15 C 0.322 3.678 16 O -0.445 6.445 17 C -0.278 4.278 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.110 4.110 28 C -0.086 4.086 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.229 0.771 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -21.444 21.871 9.980 32.214 hybrid contribution 2.141 0.698 -1.598 2.761 sum -19.303 22.569 8.382 30.858 Atomic orbital electron populations 1.21902 0.89965 1.02871 1.04955 1.22147 0.98870 0.99500 0.84616 0.85008 1.22753 0.79307 0.84421 0.87706 1.43981 1.55035 1.33834 1.07558 1.90798 1.39838 1.28681 1.87145 1.62332 1.08032 1.17513 1.34231 1.22306 0.87831 1.01066 0.97636 1.21127 0.98828 0.93598 0.97289 1.22050 0.95386 0.91850 1.02069 1.23641 1.03438 1.02211 0.90587 1.21705 0.85370 1.00450 0.97227 0.88175 1.45102 1.18102 1.21398 1.48638 1.20087 0.86903 0.82910 0.77926 1.90666 1.63496 1.29530 1.60827 1.23338 0.96796 1.04248 1.03412 1.85601 1.22215 1.24470 1.60005 1.23199 1.02582 1.08291 1.35405 0.89946 1.26187 1.03582 0.94369 0.95145 1.70193 1.39735 1.11128 1.33786 0.84907 0.76155 0.78964 0.77641 1.19061 1.20153 1.18211 1.21196 0.91658 1.00811 0.97290 1.22300 1.00055 0.89122 0.97121 0.93007 0.89079 0.89277 0.75077 0.77089 0.90112 0.94553 0.88682 0.91455 0.86797 0.87090 0.75013 0.87905 0.86917 0.91928 0.91578 0.88539 0.89155 0.96046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.73 71.98 0.63 -0.43 16 2 C 0.06 0.80 2.83 44.17 0.12 0.92 16 3 H 0.13 1.11 8.13 -2.39 -0.02 1.09 16 4 C 0.47 9.39 6.85 87.66 0.60 9.99 16 5 N -0.84 -10.05 8.77 -173.53 -1.52 -11.57 16 6 O -0.58 -18.96 12.53 -3.06 -0.04 -19.00 16 7 N -0.50 -8.64 4.61 -874.78 -4.03 -12.67 16 8 C 0.04 0.81 4.96 86.41 0.43 1.24 16 9 C -0.07 -1.24 5.67 30.76 0.17 -1.07 16 10 C -0.11 -2.26 2.02 -52.20 -0.11 -2.37 16 11 C -0.16 -3.08 9.93 30.52 0.30 -2.78 16 12 C 0.06 1.65 6.10 44.93 0.27 1.92 16 13 H 0.10 3.51 7.40 -2.39 -0.02 3.49 16 14 N -0.68 -21.13 5.35 -442.84 -2.37 -23.50 16 15 C 0.54 22.76 7.85 87.66 0.69 23.45 16 16 O -0.57 -29.58 15.43 -3.04 -0.05 -29.63 16 17 C -0.13 -5.58 6.16 71.24 0.44 -5.15 16 18 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16 19 C -0.55 -32.62 9.50 67.96 0.65 -31.98 16 20 H 0.08 4.57 7.80 -2.91 -0.02 4.54 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -57.85 13.22 21.65 0.29 -57.57 16 23 Si 1.00 44.92 29.55 68.60 2.03 46.94 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 C -0.07 -1.32 5.87 30.76 0.18 -1.14 16 28 C 0.04 0.86 4.77 86.41 0.41 1.27 16 29 H 0.05 0.56 6.14 -2.39 -0.01 0.54 16 30 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.09 0.23 7.56 -2.39 -0.02 0.21 16 32 H 0.42 1.52 8.25 -92.70 -0.76 0.76 16 33 H 0.40 5.32 8.93 -92.71 -0.83 4.49 16 34 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.04 1.08 5.60 -2.39 -0.01 1.07 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.12 6.18 -2.38 -0.01 1.11 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.41 10.04 6.85 -92.71 -0.64 9.41 16 41 H 0.10 4.22 8.14 -2.40 -0.02 4.20 16 42 H 0.11 4.40 8.14 -2.39 -0.02 4.38 16 43 H 0.27 15.93 8.31 -92.72 -0.77 15.15 16 44 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.52 5.72 -2.39 -0.01 1.51 16 47 H 0.02 0.65 5.96 -2.39 -0.01 0.63 16 Total: -1.00 -89.23 384.08 -2.79 -92.03 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -1.20 Total: 29.94 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.26 Total: -4.93 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -7.63 Total: -105.31 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.09 Total: -48.63 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -89.23 -2.79 -92.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266366165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.412 kcal (2) G-P(sol) polarization free energy of solvation -89.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds