Wall clock time and date at job start Sat Apr 11 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 103.00079 * 2 1 4 4 H 1.09001 * 109.46837 * 54.99726 * 3 2 1 5 5 C 1.53002 * 109.46990 * 295.00322 * 3 2 1 6 6 C 1.50697 * 109.47526 * 174.99882 * 3 2 1 7 7 O 1.21281 * 119.99687 * 25.06215 * 6 3 2 8 8 N 1.34776 * 120.00127 * 205.06203 * 6 3 2 9 9 C 1.47150 * 120.68483 * 354.93897 * 8 6 3 10 10 C 1.55316 * 107.98682 * 132.37855 * 9 8 6 11 11 H 1.09005 * 112.23008 * 181.88028 * 10 9 8 12 12 C 1.54545 * 108.41038 * 307.02217 * 10 9 8 13 13 C 1.54258 * 104.94136 * 88.38861 * 12 10 9 14 14 C 1.54546 * 104.93851 * 0.02562 * 13 12 10 15 15 H 1.08997 * 112.20836 * 146.47704 * 14 13 12 16 16 C 1.47155 * 120.68168 * 174.91305 * 8 6 3 17 17 N 1.48728 * 106.44463 * 58.73871 * 10 9 8 18 18 C 1.46896 * 111.00534 * 167.10705 * 17 10 9 19 19 C 1.50697 * 109.47133 * 284.79728 * 18 17 10 20 20 O 1.21299 * 119.99839 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99909 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99482 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00416 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99416 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00189 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99699 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46952 * 179.97438 * 26 24 22 28 28 H 1.48508 * 109.47058 * 299.99823 * 26 24 22 29 29 H 1.48497 * 109.47320 * 59.99986 * 26 24 22 30 30 H 1.08993 * 109.47307 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.46639 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47061 * 299.99515 * 1 2 3 33 33 H 1.08999 * 109.47378 * 59.99669 * 5 3 2 34 34 H 1.09001 * 109.46825 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46844 * 299.99400 * 5 3 2 36 36 H 1.08995 * 109.74413 * 252.24687 * 9 8 6 37 37 H 1.09004 * 109.74316 * 12.92717 * 9 8 6 38 38 H 1.09004 * 110.34765 * 207.25880 * 12 10 9 39 39 H 1.09005 * 110.34726 * 329.41761 * 12 10 9 40 40 H 1.08992 * 110.34926 * 241.13110 * 13 12 10 41 41 H 1.09007 * 110.34018 * 118.86554 * 13 12 10 42 42 H 1.08998 * 109.74409 * 107.74890 * 16 8 6 43 43 H 1.09000 * 109.74310 * 347.02472 * 16 8 6 44 44 H 1.09002 * 109.47441 * 164.79253 * 18 17 10 45 45 H 1.09006 * 109.46597 * 44.79237 * 18 17 10 46 46 H 0.96993 * 120.00208 * 359.97438 * 21 19 18 47 47 H 0.97002 * 119.99991 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 3.7142 1.9386 0.1239 7 8 4.4584 1.0537 -0.2419 8 7 4.2215 3.0751 0.6410 9 6 3.3403 4.2017 0.9868 10 6 3.7213 4.6890 2.4114 11 1 3.0853 5.5064 2.7515 12 6 3.6936 3.4743 3.3664 13 6 5.1119 2.8730 3.2864 14 6 5.8725 3.7775 2.2905 15 1 6.9277 3.8749 2.5455 16 6 5.6681 3.2146 0.8722 17 7 5.1555 5.0788 2.3535 18 6 5.5441 5.8359 3.5509 19 6 4.9952 7.2364 3.4597 20 8 4.3447 7.5710 2.4921 21 7 5.2272 8.1171 4.4532 22 6 4.7282 9.3914 4.3699 23 1 4.1498 9.6896 3.5081 24 6 4.9669 10.2992 5.3945 25 7 5.6713 9.9365 6.4429 26 14 4.2866 12.0352 5.2815 27 1 4.6779 12.8001 6.4928 28 1 4.8350 12.7042 4.0744 29 1 2.8055 11.9813 5.1877 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.6635 2.2778 -1.3969 34 1 1.9875 3.4637 -1.3071 35 1 2.2354 1.9150 -2.1491 36 1 3.4766 5.0098 0.2681 37 1 2.3012 3.8725 0.9782 38 1 3.4758 3.7974 4.3844 39 1 2.9527 2.7473 3.0336 40 1 5.0693 1.8498 2.9133 41 1 5.5910 2.9007 4.2651 42 1 6.0937 3.9000 0.1392 43 1 6.1498 2.2404 0.7895 44 1 6.6313 5.8754 3.6189 45 1 5.1421 5.3451 4.4373 46 1 5.7470 7.8494 5.2271 47 1 6.0243 9.0349 6.5018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267389304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:28:27 Heat of formation + Delta-G solvation = -67.314670 kcal Electronic energy + Delta-G solvation = -28763.059549 eV Core-core repulsion = 24878.672173 eV Total energy + Delta-G solvation = -3884.387376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -42.25224 -40.45845 -39.54270 -36.38234 -35.85856 -34.38387 -33.15798 -32.39946 -32.27509 -29.69222 -29.14605 -27.30034 -26.12276 -25.65766 -24.96356 -21.94590 -21.57132 -21.31689 -19.98275 -19.68174 -18.66943 -18.08767 -17.69891 -17.33007 -16.89013 -16.34959 -16.27131 -15.98630 -15.52798 -15.41009 -15.25938 -15.17426 -15.02342 -14.86435 -14.40625 -14.20207 -14.02907 -13.73549 -13.50700 -13.36394 -13.32216 -13.24077 -12.98628 -12.76770 -12.75707 -12.58322 -12.23498 -12.08711 -11.96230 -11.91934 -11.85609 -11.50400 -11.46418 -10.97062 -10.80545 -10.41086 -10.07076 -9.88892 -9.42952 -8.89216 -8.74123 -6.02979 0.41357 1.44039 1.54262 1.55546 1.60423 1.82869 1.87182 2.05030 2.39376 2.64461 3.16961 3.19655 3.22664 3.54598 3.66425 3.72953 3.79561 3.86137 3.87456 4.09602 4.17338 4.25370 4.29182 4.33040 4.36318 4.40841 4.44638 4.52920 4.55492 4.61524 4.63734 4.67563 4.78515 4.81713 4.88277 4.90499 5.03461 5.07670 5.15836 5.34674 5.61107 5.77963 5.86975 5.99634 6.24931 6.61401 6.79146 6.96302 7.48789 7.97789 8.58571 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.002508 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.685874 B =11162.244151 C =11676.787837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.083 4.083 4 H 0.126 0.874 5 C -0.140 4.140 6 C 0.535 3.465 7 O -0.564 6.564 8 N -0.594 5.594 9 C 0.127 3.873 10 C 0.055 3.945 11 H 0.087 0.913 12 C -0.140 4.140 13 C -0.138 4.138 14 C 0.051 3.949 15 H 0.122 0.878 16 C 0.131 3.869 17 N -0.496 5.496 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.606 6.606 21 N -0.591 5.591 22 C -0.404 4.404 23 H 0.074 0.926 24 C -0.044 4.044 25 N -0.920 5.920 26 Si 1.131 2.869 27 H -0.275 1.275 28 H -0.274 1.274 29 H -0.272 1.272 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.383 0.617 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -18.253 -8.579 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.033 6.033 3 C -0.214 4.214 4 H 0.143 0.857 5 C -0.199 4.199 6 C 0.322 3.678 7 O -0.442 6.442 8 N -0.326 5.326 9 C 0.004 3.996 10 C -0.055 4.055 11 H 0.105 0.895 12 C -0.179 4.179 13 C -0.177 4.177 14 C -0.058 4.058 15 H 0.140 0.860 16 C 0.008 3.992 17 N -0.219 5.219 18 C -0.082 4.082 19 C 0.237 3.763 20 O -0.491 6.491 21 N -0.230 5.230 22 C -0.534 4.534 23 H 0.092 0.908 24 C -0.242 4.242 25 N -0.560 5.560 26 Si 0.951 3.049 27 H -0.200 1.200 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.216 0.784 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.294 -17.537 -9.101 21.061 hybrid contribution -0.360 -0.855 0.491 1.050 sum -7.655 -18.392 -8.609 21.702 Atomic orbital electron populations 1.23592 0.91327 1.07769 1.06293 1.87600 1.09753 1.07893 1.98062 1.23347 0.95532 0.97457 1.05048 0.85665 1.22022 1.03227 1.01271 0.93404 1.20029 0.89829 0.81206 0.76703 1.90705 1.61359 1.42255 1.49928 1.48035 1.08350 1.14400 1.61834 1.22278 0.94194 0.87973 0.95170 1.23630 0.90581 0.95943 0.95345 0.89537 1.22790 0.98050 0.97234 0.99812 1.22774 0.95197 0.99659 1.00034 1.23597 0.99906 0.87424 0.94896 0.86025 1.21795 0.80193 1.01506 0.95724 1.65045 1.04452 1.16076 1.36282 1.21821 1.01936 0.90850 0.93627 1.20694 0.84266 0.87966 0.83356 1.90491 1.44585 1.80229 1.33792 1.42009 1.49501 1.11486 1.20032 1.20477 1.34872 0.89521 1.08512 0.90802 1.27746 0.96442 1.08756 0.91243 1.70972 1.34339 1.20936 1.29733 0.82654 0.76197 0.69329 0.76681 1.19999 1.19942 1.19712 0.88899 0.86780 0.89256 0.88860 0.90384 0.91849 0.90850 0.87333 0.91520 0.90312 0.91223 0.90403 0.90999 0.88937 0.87402 0.91095 0.78354 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.45 113.37 1.19 -0.05 16 2 S -0.26 -5.15 21.10 -56.49 -1.19 -6.34 16 3 C -0.08 -1.48 2.34 29.85 0.07 -1.41 16 4 H 0.13 1.76 6.38 -2.39 -0.02 1.74 16 5 C -0.14 -2.00 8.95 71.98 0.64 -1.36 16 6 C 0.53 12.97 6.81 87.66 0.60 13.57 16 7 O -0.56 -17.90 15.63 -3.03 -0.05 -17.95 16 8 N -0.59 -13.42 2.28 -812.07 -1.85 -15.27 16 9 C 0.13 2.77 5.34 87.05 0.47 3.24 16 10 C 0.05 1.43 3.26 45.88 0.15 1.58 16 11 H 0.09 2.80 7.01 -2.38 -0.02 2.78 16 12 C -0.14 -2.96 5.49 31.55 0.17 -2.79 16 13 C -0.14 -2.76 5.70 31.55 0.18 -2.58 16 14 C 0.05 1.12 3.63 45.41 0.16 1.28 16 15 H 0.12 2.29 7.97 -2.39 -0.02 2.27 16 16 C 0.13 3.00 5.90 86.58 0.51 3.51 16 17 N -0.50 -14.18 4.54 -828.75 -3.76 -17.94 16 18 C 0.05 1.55 5.15 85.56 0.44 1.99 16 19 C 0.45 20.10 7.43 87.66 0.65 20.75 16 20 O -0.61 -31.55 14.93 -3.09 -0.05 -31.59 16 21 N -0.59 -28.90 5.28 -306.98 -1.62 -30.52 16 22 C -0.40 -22.46 9.68 84.04 0.81 -21.64 16 23 H 0.07 4.40 7.16 -2.91 -0.02 4.38 16 24 C -0.04 -2.34 5.50 84.93 0.47 -1.87 16 25 N -0.92 -50.64 13.68 21.66 0.30 -50.34 16 26 Si 1.13 47.65 29.92 68.60 2.05 49.70 16 27 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 30 H 0.09 0.70 7.14 -2.39 -0.02 0.69 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.89 6.92 -2.39 -0.02 0.87 16 34 H 0.08 1.05 7.48 -2.39 -0.02 1.04 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 1.74 5.36 -2.39 -0.01 1.73 16 38 H 0.07 1.44 7.93 -2.38 -0.02 1.43 16 39 H 0.08 1.50 7.88 -2.38 -0.02 1.48 16 40 H 0.07 1.46 7.86 -2.39 -0.02 1.45 16 41 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 2.17 7.15 -2.39 -0.02 2.15 16 44 H 0.11 2.99 7.96 -2.39 -0.02 2.97 16 45 H 0.07 1.99 6.98 -2.38 -0.02 1.98 16 46 H 0.38 17.29 6.73 -92.71 -0.62 16.67 16 47 H 0.26 13.74 6.78 -92.71 -0.63 13.11 16 Total: -1.00 -73.55 377.88 0.85 -72.70 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.51 Total: 33.34 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.51 Total: 14.21 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -6.94 Total: -114.07 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.09 Total: -49.54 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.70 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.19 Total: -6.34 kcal Total: -73.55 0.85 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267389304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.387 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds