Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46919 * 2 1 4 4 C 1.46904 * 110.99832 * 75.94681 * 3 2 1 5 5 C 1.52995 * 109.47485 * 67.00766 * 4 3 2 6 6 N 1.46503 * 109.47187 * 177.53508 * 5 4 3 7 7 C 1.34777 * 119.99885 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00078 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99892 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.76203 * 100.00156 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00333 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99621 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47145 * 59.99814 * 15 13 11 17 17 H 1.48503 * 109.46935 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46993 * 299.99440 * 15 13 11 19 19 C 1.46899 * 110.99843 * 199.89394 * 3 2 1 20 20 H 1.09001 * 109.47385 * 296.04694 * 19 3 2 21 21 C 1.53001 * 109.47041 * 176.04772 * 19 3 2 22 22 C 1.50699 * 109.47032 * 56.05001 * 19 3 2 23 23 N 1.30263 * 125.61883 * 44.69149 * 22 19 3 24 24 C 1.34478 * 108.69932 * 179.83868 * 23 22 19 25 25 C 1.34332 * 107.66771 * 0.42780 * 24 23 22 26 26 C 1.50701 * 126.43976 * 179.76986 * 25 24 23 27 27 O 1.33972 * 125.62132 * 224.99927 * 22 19 3 28 28 H 1.08999 * 109.47144 * 174.58241 * 1 2 3 29 29 H 1.08999 * 109.46903 * 294.57506 * 1 2 3 30 30 H 1.08996 * 109.47124 * 54.57493 * 1 2 3 31 31 H 1.08995 * 109.46836 * 240.00199 * 2 1 3 32 32 H 1.08998 * 109.47158 * 120.00258 * 2 1 3 33 33 H 1.08998 * 109.46979 * 307.00748 * 4 3 2 34 34 H 1.08999 * 109.47069 * 187.01502 * 4 3 2 35 35 H 1.08997 * 109.47226 * 297.54399 * 5 4 3 36 36 H 1.09006 * 109.46711 * 57.53946 * 5 4 3 37 37 H 0.97000 * 119.99835 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47038 * 299.99964 * 9 7 6 39 39 H 1.09003 * 109.47493 * 59.99827 * 9 7 6 40 40 H 0.97003 * 119.99892 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.46737 * 179.97438 * 21 19 3 42 42 H 1.09001 * 109.46967 * 300.00177 * 21 19 3 43 43 H 1.08996 * 109.47212 * 60.00346 * 21 19 3 44 44 H 1.08001 * 126.16684 * 180.16444 * 24 23 22 45 45 H 1.09001 * 109.46936 * 269.96390 * 26 25 24 46 46 H 1.09003 * 109.47417 * 29.97132 * 26 25 24 47 47 H 1.09005 * 109.46924 * 149.97224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8812 1.9923 1.3304 5 6 2.8259 1.2943 2.3107 6 7 2.7309 1.9382 3.6231 7 6 3.4788 1.4885 4.6502 8 8 4.2310 0.5510 4.4877 9 6 3.3806 2.1506 6.0003 10 16 4.4996 1.3258 7.1595 11 6 4.1890 2.2740 8.6118 12 1 3.4779 3.0864 8.5845 13 6 4.8589 1.9776 9.7907 14 7 5.7260 0.9878 9.8239 15 14 4.5291 2.9824 11.3305 16 1 3.0940 2.8717 11.6958 17 1 5.3643 2.4682 12.4455 18 1 4.8664 4.4057 11.0744 19 6 3.4110 1.4515 -0.4667 20 1 4.0543 0.9153 0.2310 21 6 3.8527 2.9141 -0.5467 22 6 3.5138 0.8203 -1.8313 23 7 2.6900 1.0153 -2.8213 24 6 3.1034 0.2898 -3.8754 25 6 4.2110 -0.3736 -3.5046 26 6 5.0191 -1.3151 -4.3599 27 8 4.4642 -0.0382 -2.2243 28 1 -0.3633 -1.0231 -0.0970 29 1 -0.3633 0.4274 0.9346 30 1 -0.3633 0.5956 -0.8374 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8531 1.8813 1.6752 34 1 2.1332 3.0513 1.2744 35 1 2.5463 0.2445 2.3998 36 1 3.8496 1.3676 1.9433 37 1 2.1296 2.6883 3.7529 38 1 3.6596 3.2005 5.9113 39 1 2.3571 2.0765 6.3678 40 1 6.1945 0.7808 10.6477 41 1 4.8852 2.9634 -0.8925 42 1 3.2094 3.4503 -1.2444 43 1 3.7784 3.3706 0.4403 44 1 2.6278 0.2448 -4.8441 45 1 4.6359 -2.3292 -4.2457 46 1 4.9428 -1.0133 -5.4045 47 1 6.0631 -1.2840 -4.0480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317473726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -7.181535 kcal Electronic energy + Delta-G solvation = -26989.457489 eV Core-core repulsion = 23107.677681 eV Total energy + Delta-G solvation = -3881.779808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.65621 -39.74070 -38.62221 -35.02752 -34.53160 -33.47063 -32.43851 -32.23486 -30.73054 -29.16825 -27.65314 -26.74718 -25.49300 -24.44227 -23.24964 -22.37031 -21.54664 -20.49637 -19.90625 -17.84674 -17.67863 -17.26883 -16.59120 -16.31745 -16.10899 -15.50629 -15.20936 -14.83972 -14.81011 -14.33242 -14.23511 -13.98431 -13.83218 -13.54671 -13.46129 -13.37451 -13.15115 -12.76682 -12.66976 -12.57881 -12.28502 -12.19781 -12.04626 -11.88279 -11.78275 -11.58378 -11.25130 -11.05702 -11.04728 -10.94906 -10.78211 -10.70046 -9.84263 -9.49453 -9.07530 -8.97258 -8.92937 -8.70369 -8.25615 -6.51566 -6.22503 -3.93439 1.10656 2.18343 2.42158 2.97771 3.05737 3.22913 3.25960 3.28850 3.45430 3.66289 3.76469 4.19584 4.40134 4.56465 4.56855 4.61092 4.69318 4.70200 4.91906 4.94202 4.96191 5.03419 5.11290 5.12584 5.14071 5.20362 5.26557 5.30730 5.41637 5.49793 5.58093 5.59819 5.69349 5.70489 5.73767 5.78630 5.87137 5.89097 6.00169 6.07144 6.11832 6.46157 6.56200 6.65679 7.50657 7.58240 7.64892 8.34033 8.56882 9.22639 10.84856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.001864 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.066838 B =15021.202802 C =15502.264978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.508 5.508 4 C 0.042 3.958 5 C 0.079 3.921 6 N -0.735 5.735 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.173 3.827 20 H 0.076 0.924 21 C -0.144 4.144 22 C 0.193 3.807 23 N -0.451 5.451 24 C -0.047 4.047 25 C -0.051 4.051 26 C -0.068 4.068 27 O -0.202 6.202 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.182 0.818 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 0.371 -28.543 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.233 5.233 4 C -0.086 4.086 5 C -0.047 4.047 6 N -0.390 5.390 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.064 3.936 20 H 0.094 0.906 21 C -0.201 4.201 22 C -0.015 4.015 23 N -0.179 5.179 24 C -0.186 4.186 25 C -0.104 4.104 26 C -0.125 4.125 27 O -0.089 6.089 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.199 0.801 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.128 -0.675 -28.996 29.867 hybrid contribution -0.287 1.038 1.616 1.942 sum -7.415 0.363 -27.380 28.369 Atomic orbital electron populations 1.21701 0.94044 1.01626 1.02533 1.22233 0.97075 0.88203 1.01088 1.62272 1.17477 1.19394 1.24128 1.22537 1.00494 0.99732 0.85882 1.22028 1.00710 0.98206 0.83749 1.45857 1.46192 1.37106 1.09866 1.20350 0.79207 0.83364 0.85332 1.90707 1.37249 1.27635 1.83568 1.23526 1.06554 1.04129 0.96162 1.85406 1.51386 1.44166 1.02460 1.22825 1.29484 1.19983 0.96150 0.90945 1.24996 0.94495 0.95442 0.98658 1.70010 1.24695 1.27534 1.28054 0.86218 0.78431 0.79897 0.80920 1.19933 1.20810 1.19926 1.19968 0.91360 0.96820 0.85466 0.90620 1.21900 1.01707 0.92655 1.03881 1.25885 0.85180 0.92240 0.98146 1.70486 1.26474 1.22076 0.98866 1.23173 0.96462 0.99011 0.99968 1.23510 1.00204 1.03355 0.83360 1.20278 0.99102 0.96317 0.96823 1.84407 1.47471 1.50041 1.26961 0.92423 0.92591 0.91495 0.91391 0.93550 0.88983 0.89032 0.91461 0.91485 0.76642 0.89147 0.89163 0.92122 0.91576 0.90422 0.90482 0.80095 0.89767 0.88976 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.94 37.16 0.37 -0.82 16 2 C 0.04 0.40 5.45 -3.82 -0.02 0.38 16 3 N -0.51 -4.69 4.49 -228.04 -1.02 -5.71 16 4 C 0.04 0.34 4.93 -3.82 -0.02 0.32 16 5 C 0.08 0.88 5.03 -4.04 -0.02 0.86 16 6 N -0.73 -9.24 5.56 -60.29 -0.33 -9.58 16 7 C 0.53 9.71 7.85 -10.99 -0.09 9.63 16 8 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 9 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 15 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.17 1.68 2.15 -68.86 -0.15 1.53 16 20 H 0.08 0.77 6.19 -51.93 -0.32 0.45 16 21 C -0.14 -1.19 8.94 37.16 0.33 -0.86 16 22 C 0.19 2.13 5.27 -12.94 -0.07 2.06 16 23 N -0.45 -5.16 11.17 -11.10 -0.12 -5.29 16 24 C -0.05 -0.43 11.80 -17.77 -0.21 -0.64 16 25 C -0.05 -0.45 7.39 -35.69 -0.26 -0.71 16 26 C -0.07 -0.32 10.43 36.01 0.38 0.06 16 27 O -0.20 -2.26 10.78 5.36 0.06 -2.20 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 7.02 -51.93 -0.36 0.08 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.73 6.30 -51.93 -0.33 0.40 16 32 H 0.05 0.46 6.03 -51.93 -0.31 0.15 16 33 H 0.09 0.68 6.80 -51.93 -0.35 0.33 16 34 H 0.09 0.64 6.47 -51.93 -0.34 0.31 16 35 H 0.07 0.85 6.42 -51.93 -0.33 0.51 16 36 H 0.07 0.81 6.22 -51.93 -0.32 0.49 16 37 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.57 6.47 -51.93 -0.34 0.23 16 44 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -36.19 396.68 -8.32 -44.51 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.13 Total: 0.76 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 0.66 Total: -3.92 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.75 Total: -45.97 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.15 Total: -13.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.19 -8.32 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317473726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.333 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds