Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46919 * 2 1 4 4 C 1.46904 * 110.99832 * 75.94681 * 3 2 1 5 5 C 1.52995 * 109.47485 * 67.00766 * 4 3 2 6 6 N 1.46503 * 109.47187 * 177.53508 * 5 4 3 7 7 C 1.34777 * 119.99885 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00078 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99892 * 180.02562 * 7 6 5 10 10 S 1.81001 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.76203 * 100.00156 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00333 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99621 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47145 * 59.99814 * 15 13 11 17 17 H 1.48503 * 109.46935 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46993 * 299.99440 * 15 13 11 19 19 C 1.46899 * 110.99843 * 199.89394 * 3 2 1 20 20 H 1.09001 * 109.47385 * 296.04694 * 19 3 2 21 21 C 1.53001 * 109.47041 * 176.04772 * 19 3 2 22 22 C 1.50699 * 109.47032 * 56.05001 * 19 3 2 23 23 N 1.30263 * 125.61883 * 44.69149 * 22 19 3 24 24 C 1.34478 * 108.69932 * 179.83868 * 23 22 19 25 25 C 1.34332 * 107.66771 * 0.42780 * 24 23 22 26 26 C 1.50701 * 126.43976 * 179.76986 * 25 24 23 27 27 O 1.33972 * 125.62132 * 224.99927 * 22 19 3 28 28 H 1.08999 * 109.47144 * 174.58241 * 1 2 3 29 29 H 1.08999 * 109.46903 * 294.57506 * 1 2 3 30 30 H 1.08996 * 109.47124 * 54.57493 * 1 2 3 31 31 H 1.08995 * 109.46836 * 240.00199 * 2 1 3 32 32 H 1.08998 * 109.47158 * 120.00258 * 2 1 3 33 33 H 1.08998 * 109.46979 * 307.00748 * 4 3 2 34 34 H 1.08999 * 109.47069 * 187.01502 * 4 3 2 35 35 H 1.08997 * 109.47226 * 297.54399 * 5 4 3 36 36 H 1.09006 * 109.46711 * 57.53946 * 5 4 3 37 37 H 0.97000 * 119.99835 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47038 * 299.99964 * 9 7 6 39 39 H 1.09003 * 109.47493 * 59.99827 * 9 7 6 40 40 H 0.97003 * 119.99892 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.46737 * 179.97438 * 21 19 3 42 42 H 1.09001 * 109.46967 * 300.00177 * 21 19 3 43 43 H 1.08996 * 109.47212 * 60.00346 * 21 19 3 44 44 H 1.08001 * 126.16684 * 180.16444 * 24 23 22 45 45 H 1.09001 * 109.46936 * 269.96390 * 26 25 24 46 46 H 1.09003 * 109.47417 * 29.97132 * 26 25 24 47 47 H 1.09005 * 109.46924 * 149.97224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8812 1.9923 1.3304 5 6 2.8259 1.2943 2.3107 6 7 2.7309 1.9382 3.6231 7 6 3.4788 1.4885 4.6502 8 8 4.2310 0.5510 4.4877 9 6 3.3806 2.1506 6.0003 10 16 4.4996 1.3258 7.1595 11 6 4.1890 2.2740 8.6118 12 1 3.4779 3.0864 8.5845 13 6 4.8589 1.9776 9.7907 14 7 5.7260 0.9878 9.8239 15 14 4.5291 2.9824 11.3305 16 1 3.0940 2.8717 11.6958 17 1 5.3643 2.4682 12.4455 18 1 4.8664 4.4057 11.0744 19 6 3.4110 1.4515 -0.4667 20 1 4.0543 0.9153 0.2310 21 6 3.8527 2.9141 -0.5467 22 6 3.5138 0.8203 -1.8313 23 7 2.6900 1.0153 -2.8213 24 6 3.1034 0.2898 -3.8754 25 6 4.2110 -0.3736 -3.5046 26 6 5.0191 -1.3151 -4.3599 27 8 4.4642 -0.0382 -2.2243 28 1 -0.3633 -1.0231 -0.0970 29 1 -0.3633 0.4274 0.9346 30 1 -0.3633 0.5956 -0.8374 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8531 1.8813 1.6752 34 1 2.1332 3.0513 1.2744 35 1 2.5463 0.2445 2.3998 36 1 3.8496 1.3676 1.9433 37 1 2.1296 2.6883 3.7529 38 1 3.6596 3.2005 5.9113 39 1 2.3571 2.0765 6.3678 40 1 6.1945 0.7808 10.6477 41 1 4.8852 2.9634 -0.8925 42 1 3.2094 3.4503 -1.2444 43 1 3.7784 3.3706 0.4403 44 1 2.6278 0.2448 -4.8441 45 1 4.6359 -2.3292 -4.2457 46 1 4.9428 -1.0133 -5.4045 47 1 6.0631 -1.2840 -4.0480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317473726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = -35.937384 kcal Electronic energy + Delta-G solvation = -26990.704436 eV Core-core repulsion = 23107.677681 eV Total energy + Delta-G solvation = -3883.026755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.39780 -40.86684 -39.71216 -35.94661 -35.58463 -34.57883 -34.18078 -32.87297 -31.85492 -30.29841 -28.45390 -27.72267 -27.39442 -25.27821 -24.01550 -23.09060 -22.29668 -21.84021 -20.77350 -19.77023 -18.49039 -18.10096 -17.74744 -17.37913 -17.12440 -16.87161 -16.64845 -16.29031 -15.75349 -15.60859 -15.18729 -15.01549 -14.65880 -14.55293 -14.43441 -14.29962 -13.99624 -13.88818 -13.56817 -13.41979 -13.23953 -13.16509 -12.98739 -12.88336 -12.84904 -12.68179 -12.61465 -12.53042 -12.37779 -11.99258 -11.75112 -11.73468 -11.47063 -11.12354 -11.03421 -10.27424 -10.14527 -9.63713 -9.49483 -8.66622 -8.34069 -6.12363 0.38876 1.26759 1.44552 1.46170 1.51426 1.57700 1.59774 1.69076 2.22258 2.28736 2.75341 3.00069 3.01068 3.33021 3.71029 3.79311 3.84975 3.92412 3.96106 4.03874 4.09318 4.17961 4.25605 4.32378 4.37267 4.42850 4.51274 4.52624 4.57759 4.62290 4.64299 4.76656 4.79511 4.95045 4.96680 5.02587 5.03465 5.16640 5.19387 5.31084 5.35924 5.38104 5.42321 5.79324 5.88967 6.20185 6.49220 6.75941 7.07154 7.23523 8.74842 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023001 B = 0.001864 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.066838 B =15021.202802 C =15502.264978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.044 3.956 3 N -0.505 5.505 4 C 0.051 3.949 5 C 0.082 3.918 6 N -0.705 5.705 7 C 0.533 3.467 8 O -0.569 6.569 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.171 3.829 20 H 0.065 0.935 21 C -0.137 4.137 22 C 0.177 3.823 23 N -0.470 5.470 24 C -0.062 4.062 25 C -0.053 4.053 26 C -0.067 4.067 27 O -0.222 6.222 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.421 0.579 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.207 0.793 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 2.199 -29.296 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 N -0.230 5.230 4 C -0.076 4.076 5 C -0.043 4.043 6 N -0.360 5.360 7 C 0.319 3.681 8 O -0.447 6.447 9 C -0.280 4.280 10 S 0.072 5.928 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.186 1.186 19 C 0.062 3.938 20 H 0.083 0.917 21 C -0.195 4.195 22 C -0.030 4.030 23 N -0.199 5.199 24 C -0.200 4.200 25 C -0.106 4.106 26 C -0.124 4.124 27 O -0.110 6.110 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.258 0.742 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.224 0.776 45 H 0.114 0.886 46 H 0.136 0.864 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.932 1.191 -29.795 31.127 hybrid contribution 0.222 0.431 1.659 1.728 sum -8.710 1.622 -28.136 29.498 Atomic orbital electron populations 1.21652 0.92877 1.01993 1.02722 1.22194 0.97933 0.88318 0.99960 1.62339 1.17172 1.19134 1.24322 1.22588 1.00451 1.00213 0.84384 1.22118 1.01181 0.97827 0.83211 1.45536 1.44594 1.36839 1.09057 1.20123 0.79396 0.82767 0.85844 1.90700 1.39770 1.29948 1.84269 1.23364 1.05352 1.04243 0.95006 1.85610 1.54916 1.46835 1.05471 1.23178 1.29672 1.20092 0.96422 0.89750 1.26142 0.94000 0.96583 1.02521 1.70184 1.26019 1.29551 1.29076 0.84999 0.78739 0.78304 0.75933 1.18632 1.20519 1.18588 1.20027 0.91390 0.97463 0.84896 0.91710 1.21866 1.01582 0.91623 1.04434 1.26098 0.85469 0.92806 0.98648 1.70444 1.26930 1.22861 0.99636 1.23645 0.96918 0.98934 1.00544 1.24310 1.00417 1.03188 0.82678 1.20500 0.98529 0.96001 0.97350 1.84409 1.47904 1.50360 1.28293 0.91912 0.91676 0.92013 0.92930 0.94310 0.87374 0.87009 0.92897 0.92416 0.74163 0.86904 0.87012 0.92036 0.91578 0.90705 0.89299 0.77597 0.88601 0.86439 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.94 71.98 0.72 -1.38 16 2 C 0.04 0.82 5.45 86.31 0.47 1.29 16 3 N -0.51 -8.83 4.49 -875.38 -3.93 -12.76 16 4 C 0.05 0.72 4.93 86.30 0.43 1.15 16 5 C 0.08 1.74 5.03 86.38 0.43 2.17 16 6 N -0.71 -16.26 5.56 -463.06 -2.57 -18.83 16 7 C 0.53 19.05 7.85 87.66 0.69 19.74 16 8 O -0.57 -26.22 15.86 -3.06 -0.05 -26.27 16 9 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 10 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 11 C -0.55 -30.91 9.50 67.95 0.65 -30.26 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.69 5.49 84.86 0.47 1.16 16 14 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 15 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 C 0.17 3.31 2.15 44.17 0.09 3.40 16 20 H 0.07 1.37 6.19 -2.39 -0.01 1.36 16 21 C -0.14 -2.15 8.94 71.98 0.64 -1.51 16 22 C 0.18 3.95 5.27 88.34 0.47 4.42 16 23 N -0.47 -10.66 11.17 -303.81 -3.39 -14.05 16 24 C -0.06 -1.10 11.80 83.39 0.98 -0.11 16 25 C -0.05 -0.91 7.39 24.79 0.18 -0.72 16 26 C -0.07 -0.53 10.43 71.24 0.74 0.22 16 27 O -0.22 -5.09 10.78 -3.72 -0.04 -5.13 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.89 7.02 -2.39 -0.02 0.87 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.16 6.30 -2.39 -0.02 1.14 16 32 H 0.04 0.78 6.03 -2.39 -0.01 0.77 16 33 H 0.11 1.25 6.80 -2.39 -0.02 1.23 16 34 H 0.11 1.19 6.47 -2.39 -0.02 1.17 16 35 H 0.05 1.32 6.42 -2.39 -0.02 1.30 16 36 H 0.06 1.38 6.22 -2.38 -0.01 1.37 16 37 H 0.42 6.33 8.47 -92.71 -0.79 5.54 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.15 6.47 -2.39 -0.02 1.13 16 44 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -81.73 396.68 -1.23 -82.95 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.21 Total: 19.15 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 7.40 Total: -4.92 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -9.61 Total: -101.36 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.09 Total: -31.39 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -81.73 -1.23 -82.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317473726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.016 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds