Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00004 * 2 1 4 4 C 1.53000 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46595 * 304.99919 * 4 3 2 6 6 C 1.52999 * 109.47072 * 64.99997 * 4 3 2 7 7 C 1.50699 * 109.46824 * 184.99941 * 4 3 2 8 8 O 1.21277 * 120.00337 * 332.10265 * 7 4 3 9 9 N 1.34776 * 119.99746 * 152.10374 * 7 4 3 10 10 C 1.47865 * 126.92810 * 5.41493 * 9 7 4 11 11 C 1.56022 * 105.11232 * 181.90152 * 10 9 7 12 12 H 1.09000 * 116.25752 * 158.85173 * 11 10 9 13 13 C 1.57083 * 99.59741 * 32.80650 * 11 10 9 14 14 C 1.49279 * 126.92479 * 185.10322 * 9 7 4 15 15 H 1.08998 * 116.12624 * 16.88836 * 14 9 7 16 16 C 1.56017 * 104.12887 * 246.92253 * 14 9 7 17 17 N 1.49710 * 105.32840 * 288.98010 * 16 14 9 18 18 C 1.46900 * 111.74409 * 122.21023 * 17 16 14 19 19 C 1.50704 * 109.47128 * 184.60180 * 18 17 16 20 20 O 1.21293 * 119.99718 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00176 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00144 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99939 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99802 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00376 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99898 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47370 * 59.99961 * 26 24 22 28 28 H 1.48502 * 109.47434 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47254 * 300.00153 * 26 24 22 30 30 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47141 * 300.00164 * 1 2 3 32 32 H 1.08996 * 109.47043 * 60.00441 * 1 2 3 33 33 H 1.09003 * 109.47216 * 59.99431 * 3 2 1 34 34 H 1.09002 * 109.46636 * 300.00073 * 3 2 1 35 35 H 1.09000 * 109.47211 * 54.67410 * 6 4 3 36 36 H 1.09003 * 109.47123 * 174.67238 * 6 4 3 37 37 H 1.09000 * 109.47090 * 294.67124 * 6 4 3 38 38 H 1.09002 * 110.31383 * 300.80787 * 10 9 7 39 39 H 1.08994 * 110.31371 * 62.98884 * 10 9 7 40 40 H 1.08990 * 112.35945 * 64.33783 * 13 11 10 41 41 H 1.09006 * 112.35062 * 191.66041 * 13 11 10 42 42 H 1.09001 * 110.31942 * 47.69298 * 16 14 9 43 43 H 1.08998 * 110.32247 * 169.79493 * 16 14 9 44 44 H 1.09001 * 109.46953 * 304.60268 * 18 17 16 45 45 H 1.09000 * 109.47169 * 64.60475 * 18 17 16 46 46 H 0.96998 * 119.99517 * 0.02562 * 21 19 18 47 47 H 0.97005 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3172 1.3918 -1.3083 7 6 4.0819 3.4029 0.1232 8 8 3.3093 4.2419 -0.2892 9 7 5.2444 3.7791 0.6921 10 6 6.3402 2.8943 1.1426 11 6 7.4063 3.8504 1.7620 12 1 8.1124 3.3985 2.4587 13 6 6.4574 4.9583 2.3449 14 6 5.6879 5.1732 0.9887 15 1 4.9088 5.9355 0.9864 16 6 6.8984 5.3997 0.0309 17 7 8.0012 4.5482 0.5786 18 6 8.4859 3.5803 -0.4145 19 6 9.5117 2.6783 0.2222 20 8 9.8093 2.8269 1.3886 21 7 10.0976 1.7060 -0.5042 22 6 11.0304 0.8851 0.0751 23 1 11.2954 1.0174 1.1137 24 6 11.6340 -0.1177 -0.6737 25 7 11.3112 -0.2789 -1.9373 26 14 12.9045 -1.2366 0.1158 27 1 12.2858 -1.9621 1.2544 28 1 13.3942 -2.2153 -0.8880 29 1 14.0439 -0.4217 0.6087 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8031 2.2372 0.8899 34 1 1.8031 2.2370 -0.8900 35 1 3.8206 1.8704 -2.1524 36 1 5.3864 1.5995 -1.3504 37 1 4.1542 0.3150 -1.3537 38 1 5.9766 2.1947 1.8952 39 1 6.7629 2.3542 0.2955 40 1 5.8114 4.5768 3.1355 41 1 7.0030 5.8484 2.6583 42 1 6.6462 5.0795 -0.9801 43 1 7.1914 6.4496 0.0328 44 1 7.6501 2.9815 -0.7762 45 1 8.9395 4.1134 -1.2500 46 1 9.8593 1.5870 -1.4369 47 1 11.7329 -0.9788 -2.4601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318189735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = -26.860732 kcal Electronic energy + Delta-G solvation = -28652.676707 eV Core-core repulsion = 24770.043545 eV Total energy + Delta-G solvation = -3882.633162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28168 -39.12142 -37.86817 -34.73081 -34.20405 -33.53767 -31.42158 -30.85679 -29.69792 -29.36530 -27.42270 -26.63273 -25.33491 -24.34107 -23.35478 -20.93792 -20.50129 -19.34170 -18.56199 -17.86138 -17.73326 -16.57346 -16.33248 -16.04566 -15.62028 -15.39926 -15.09008 -14.56565 -14.46219 -14.08121 -13.95203 -13.88735 -13.73414 -13.37527 -13.15029 -13.00559 -12.77487 -12.56127 -12.40613 -12.30831 -12.06787 -11.79596 -11.62453 -11.57054 -11.46556 -11.38944 -11.35897 -11.22839 -11.01707 -10.90960 -10.47316 -10.28461 -10.26040 -9.84147 -9.53218 -8.76785 -8.43030 -8.05830 -7.96993 -7.93421 -6.46372 -3.87635 1.32386 2.28275 2.47868 2.79202 3.16764 3.23721 3.27275 3.80740 3.87311 4.16905 4.26238 4.35244 4.46486 4.58664 4.60069 4.67270 4.81829 4.84068 4.97315 5.01513 5.05460 5.16719 5.24020 5.29508 5.38009 5.38608 5.41224 5.46466 5.59784 5.64992 5.71558 5.73623 5.78576 5.84223 5.87639 6.01297 6.04625 6.12958 6.19840 6.37137 6.90422 7.12121 7.41331 7.50487 7.99542 8.00195 8.54946 9.12357 9.47654 9.98329 10.70949 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.003291 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.134976 B = 8507.250801 C =10546.488704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.254 6.254 3 C -0.066 4.066 4 C -0.091 4.091 5 H 0.100 0.900 6 C -0.142 4.142 7 C 0.542 3.458 8 O -0.546 6.546 9 N -0.617 5.617 10 C 0.053 3.947 11 C 0.071 3.929 12 H 0.157 0.843 13 C -0.138 4.138 14 C 0.109 3.891 15 H 0.125 0.875 16 C 0.025 3.975 17 N -0.491 5.491 18 C 0.030 3.970 19 C 0.442 3.558 20 O -0.581 6.581 21 N -0.560 5.560 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.964 4.883 2.672 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.028 6.028 3 C -0.214 4.214 4 C -0.113 4.113 5 H 0.118 0.882 6 C -0.200 4.200 7 C 0.330 3.670 8 O -0.424 6.424 9 N -0.352 5.352 10 C -0.070 4.070 11 C -0.037 4.037 12 H 0.174 0.826 13 C -0.176 4.176 14 C 0.006 3.994 15 H 0.142 0.858 16 C -0.104 4.104 17 N -0.215 5.215 18 C -0.101 4.101 19 C 0.228 3.772 20 O -0.466 6.466 21 N -0.196 5.196 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.058 4.665 3.155 17.964 hybrid contribution -0.996 -0.288 -0.691 1.246 sum -18.055 4.378 2.465 18.740 Atomic orbital electron populations 1.23389 0.94338 1.06492 1.04960 1.86927 1.07159 1.10639 1.98065 1.23228 0.97806 0.94325 1.06084 1.20997 0.94617 0.93461 1.02243 0.88213 1.21777 1.01157 1.02404 0.94616 1.20104 0.79774 0.90543 0.76608 1.90678 1.49262 1.53797 1.48678 1.49355 1.16954 1.08626 1.60233 1.23513 0.88196 0.94629 1.00671 1.24918 0.92766 0.92276 0.93758 0.82625 1.24057 0.97590 1.00301 0.95664 1.24120 0.95407 0.84477 0.95373 0.85761 1.23963 0.89642 0.99482 0.97319 1.65137 1.30519 1.20014 1.05838 1.22205 0.97772 0.94626 0.95500 1.19607 0.86073 0.83815 0.87734 1.90457 1.66384 1.72909 1.16830 1.41853 1.36611 1.28249 1.12855 1.19638 1.16056 1.09585 0.97731 0.87873 1.25264 0.98831 0.98234 0.95446 1.69599 1.43542 1.33813 1.07109 0.85929 0.80447 0.79417 0.78506 1.19853 1.20970 1.19867 0.88005 0.90549 0.90428 0.89879 0.88913 0.91686 0.91792 0.90170 0.90782 0.89741 0.90019 0.88581 0.92187 0.89189 0.92949 0.89187 0.77497 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.76 101.05 1.09 0.21 16 2 S -0.25 -2.60 21.29 -107.50 -2.29 -4.88 16 3 C -0.07 -0.70 4.86 37.16 0.18 -0.52 16 4 C -0.09 -1.05 2.27 -91.77 -0.21 -1.26 16 5 H 0.10 1.13 7.30 -51.93 -0.38 0.75 16 6 C -0.14 -1.62 8.91 37.16 0.33 -1.29 16 7 C 0.54 7.34 6.97 -10.99 -0.08 7.26 16 8 O -0.55 -8.79 16.61 5.56 0.09 -8.70 16 9 N -0.62 -7.94 2.95 -156.60 -0.46 -8.40 16 10 C 0.05 0.72 5.41 -1.68 -0.01 0.71 16 11 C 0.07 1.03 4.12 -62.31 -0.26 0.77 16 12 H 0.16 2.67 6.34 -51.93 -0.33 2.34 16 13 C -0.14 -1.57 6.84 -22.12 -0.15 -1.72 16 14 C 0.11 1.30 5.23 -62.38 -0.33 0.97 16 15 H 0.12 1.39 8.08 -51.93 -0.42 0.97 16 16 C 0.02 0.31 6.34 -0.64 0.00 0.31 16 17 N -0.49 -7.64 5.21 -216.93 -1.13 -8.77 16 18 C 0.03 0.52 4.74 -4.97 -0.02 0.49 16 19 C 0.44 9.72 7.44 -10.98 -0.08 9.64 16 20 O -0.58 -14.33 13.56 5.55 0.08 -14.26 16 21 N -0.56 -13.47 5.29 -10.96 -0.06 -13.53 16 22 C -0.30 -8.02 9.68 -14.94 -0.14 -8.16 16 23 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 24 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 26 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.09 1.02 8.02 -51.92 -0.42 0.60 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 37 H 0.08 0.89 7.33 -51.93 -0.38 0.51 16 38 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 39 H 0.08 1.26 4.70 -51.93 -0.24 1.01 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.84 5.66 -51.93 -0.29 0.54 16 45 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -30.35 385.07 -9.35 -39.69 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.30 Total: 12.72 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.22 Total: 7.96 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.93 Total: -53.79 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.29 Total: -4.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.35 -9.35 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318189735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.832 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds