Wall clock time and date at job start Sat Apr 11 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 O 1.42908 * 109.46980 * 239.99654 * 2 1 3 5 5 C 1.50704 * 109.47426 * 120.00265 * 2 1 3 6 6 N 1.29428 * 124.80424 * 74.96844 * 5 2 1 7 7 C 1.30944 * 117.36409 * 179.73574 * 6 5 2 8 8 C 1.35657 * 114.18944 * 0.52731 * 7 6 5 9 9 C 1.46685 * 126.13299 * 179.78652 * 8 7 6 10 10 O 1.21691 * 119.99742 * 8.19973 * 9 8 7 11 11 N 1.34776 * 120.00349 * 188.19337 * 9 8 7 12 12 C 1.46504 * 119.99897 * 5.53079 * 11 9 8 13 13 C 1.50697 * 109.47243 * 268.19371 * 12 11 9 14 14 H 1.08001 * 120.00232 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00235 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00507 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99909 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46896 * 90.00083 * 17 15 13 19 19 H 1.48495 * 109.47166 * 210.00561 * 17 15 13 20 20 H 1.48503 * 109.47013 * 330.00228 * 17 15 13 21 21 C 1.46495 * 119.99915 * 185.53216 * 11 9 8 22 22 C 1.53003 * 109.46930 * 269.99662 * 21 11 9 23 23 C 1.52996 * 109.47065 * 180.02562 * 22 21 11 24 24 N 1.46898 * 109.47225 * 180.02562 * 23 22 21 25 25 C 1.46897 * 111.00247 * 66.04637 * 24 23 22 26 26 C 1.46906 * 111.00162 * 190.00312 * 24 23 22 27 27 S 1.70952 * 124.80179 * 255.00280 * 5 2 1 28 28 H 1.08999 * 109.46711 * 59.99863 * 1 2 3 29 29 H 1.08995 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46757 * 300.00146 * 1 2 3 31 31 H 0.96700 * 113.99426 * 60.00561 * 4 2 1 32 32 H 1.07998 * 122.90741 * 180.35230 * 7 6 5 33 33 H 1.09002 * 109.46734 * 28.18767 * 12 11 9 34 34 H 1.09001 * 109.47228 * 148.19077 * 12 11 9 35 35 H 0.97001 * 120.00208 * 179.97438 * 16 15 13 36 36 H 1.08991 * 109.47287 * 30.00167 * 21 11 9 37 37 H 1.09001 * 109.46978 * 150.00388 * 21 11 9 38 38 H 1.09001 * 109.47469 * 300.00444 * 22 21 11 39 39 H 1.09001 * 109.46698 * 60.00554 * 22 21 11 40 40 H 1.09001 * 109.47227 * 300.00455 * 23 22 21 41 41 H 1.08999 * 109.47371 * 60.00221 * 23 22 21 42 42 H 1.09000 * 109.47227 * 60.00437 * 25 24 23 43 43 H 1.09003 * 109.47060 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47057 * 299.99878 * 25 24 23 45 45 H 1.08997 * 109.46864 * 59.99702 * 26 24 23 46 46 H 1.08998 * 109.47176 * 179.97438 * 26 24 23 47 47 H 1.09004 * 109.47051 * 299.99325 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1668 5 6 2.0325 -0.7105 1.2304 6 7 2.0189 -1.9935 1.3999 7 6 2.4981 -2.4568 2.5270 8 6 2.9402 -1.4982 3.3790 9 6 3.5199 -1.7223 4.7076 10 8 3.7774 -2.8530 5.0762 11 7 3.7674 -0.6758 5.5202 12 6 3.3472 0.6717 5.1278 13 6 4.4703 1.3530 4.3892 14 1 5.4039 0.8343 4.2285 15 6 4.3064 2.6388 3.9195 16 7 5.2867 3.2336 3.2753 17 14 2.6919 3.5363 4.1980 18 1 2.7536 4.2787 5.4825 19 1 2.4580 4.4911 3.0850 20 1 1.5808 2.5523 4.2478 21 6 4.4566 -0.8859 6.7957 22 6 3.4265 -1.1651 7.8920 23 6 4.1463 -1.3838 9.2243 24 7 3.1574 -1.6524 10.2768 25 6 2.4680 -2.9276 10.0385 26 6 3.7840 -1.6329 11.6053 27 16 2.7002 0.0643 2.6002 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7210 -0.2702 -1.9979 32 1 2.5354 -3.5108 2.7595 33 1 2.4736 0.6054 4.4793 34 1 3.0959 1.2477 6.0184 35 1 5.1713 4.1382 2.9446 36 1 5.1329 -1.7361 6.7075 37 1 5.0269 0.0070 7.0518 38 1 2.7502 -0.3148 7.9802 39 1 2.8563 -2.0580 7.6358 40 1 4.8229 -2.2339 9.1364 41 1 4.7163 -0.4907 9.4802 42 1 3.1967 -3.7382 10.0286 43 1 1.7413 -3.1015 10.8320 44 1 1.9543 -2.8889 9.0779 45 1 4.2269 -0.6531 11.7837 46 1 3.0296 -1.8342 12.3659 47 1 4.5603 -2.3967 11.6522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361680395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:45 Heat of formation + Delta-G solvation = -52.179621 kcal Electronic energy + Delta-G solvation = -28157.375513 eV Core-core repulsion = 24273.644442 eV Total energy + Delta-G solvation = -3883.731071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23405 -40.37425 -38.65481 -38.08134 -37.06381 -34.86431 -33.49051 -32.62337 -30.57305 -30.05480 -28.50139 -27.72403 -26.58955 -24.69408 -24.30245 -23.48480 -21.96327 -21.61616 -19.73548 -19.43895 -19.16531 -18.22403 -17.58354 -17.32067 -16.61943 -16.53987 -16.44120 -16.03646 -15.74702 -15.63313 -15.50159 -15.25930 -14.93859 -14.86355 -14.67167 -14.32824 -13.95626 -13.65759 -13.49974 -13.30850 -13.05376 -12.99916 -12.98100 -12.63461 -12.59369 -12.47467 -12.33251 -12.27937 -12.20526 -12.00424 -11.75108 -11.55363 -11.24858 -11.10194 -10.94449 -10.32818 -10.27165 -9.86738 -9.50545 -9.33904 -8.34282 -6.39013 -0.70017 0.35554 0.81622 1.37781 1.41758 1.47008 1.47719 2.03762 2.18451 2.29695 2.99094 3.02368 3.09073 3.49436 3.60110 3.87603 3.95345 4.08578 4.09141 4.19743 4.23689 4.31691 4.36329 4.40510 4.47722 4.50467 4.59801 4.63080 4.69509 4.77140 4.78866 4.80854 4.82321 4.98596 5.01547 5.10704 5.12991 5.21433 5.24941 5.29545 5.54955 6.03125 6.06242 6.10349 6.39335 6.61509 6.71373 6.91333 7.02718 7.20502 8.80425 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003832 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.692830 B = 7304.884632 C = 8870.567062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.176 3.824 3 H 0.089 0.911 4 O -0.571 6.571 5 C -0.033 4.033 6 N -0.487 5.487 7 C 0.102 3.898 8 C -0.330 4.330 9 C 0.592 3.408 10 O -0.574 6.574 11 N -0.588 5.588 12 C 0.202 3.798 13 C -0.535 4.535 14 H 0.040 0.960 15 C 0.051 3.949 16 N -0.919 5.919 17 Si 0.892 3.108 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.227 1.227 21 C 0.124 3.876 22 C -0.116 4.116 23 C 0.064 3.936 24 N -0.562 5.562 25 C 0.022 3.978 26 C 0.024 3.976 27 S 0.322 5.678 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.187 0.813 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.274 0.726 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.025 0.975 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 -2.579 4.556 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.115 3.885 3 H 0.106 0.894 4 O -0.380 6.380 5 C -0.304 4.304 6 N -0.202 5.202 7 C -0.060 4.060 8 C -0.455 4.455 9 C 0.380 3.620 10 O -0.458 6.458 11 N -0.317 5.317 12 C 0.078 3.922 13 C -0.576 4.576 14 H 0.059 0.941 15 C -0.153 4.153 16 N -0.556 5.556 17 Si 0.713 3.287 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.150 1.150 21 C 0.001 3.999 22 C -0.155 4.155 23 C -0.065 4.065 24 N -0.286 5.286 25 C -0.126 4.126 26 C -0.123 4.123 27 S 0.587 5.413 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.203 0.797 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.661 -2.194 4.846 11.029 hybrid contribution 0.447 -0.788 -0.309 0.957 sum -9.214 -2.982 4.536 10.695 Atomic orbital electron populations 1.22429 0.92363 1.03405 1.04648 1.20290 0.94761 0.92915 0.80582 0.89362 1.86606 1.77216 1.57911 1.16248 1.28733 1.01571 0.95055 1.05075 1.66243 1.19130 1.13610 1.21218 1.22190 0.95268 1.01259 0.87285 1.25900 1.18061 0.98747 1.02797 1.16949 0.77725 0.84477 0.82799 1.90703 1.55965 1.23042 1.76047 1.47779 1.56765 1.07650 1.19500 1.20036 0.95174 0.80066 0.96897 1.21286 0.99992 0.99686 1.36636 0.94125 1.25457 0.99314 0.97154 0.93338 1.69991 1.34026 1.14577 1.37047 0.86496 0.81577 0.80832 0.79822 1.18410 1.19431 1.14980 1.21423 0.94612 1.02399 0.81481 1.21787 0.98350 1.01961 0.93387 1.21980 0.93066 1.01103 0.90320 1.61972 1.29864 1.33619 1.03139 1.22432 0.98566 0.89030 1.02545 1.22432 0.98623 1.01752 0.89526 1.86024 1.47615 1.03854 1.03830 0.87988 0.92316 0.90962 0.74805 0.79662 0.93986 0.91981 0.91664 0.91379 0.89276 0.91147 0.92835 0.94763 0.89543 0.95676 0.90040 0.92231 0.90743 0.90252 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 9.52 71.98 0.69 -2.83 16 2 C 0.18 4.84 4.08 29.85 0.12 4.96 16 3 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 4 O -0.57 -15.60 13.29 -148.98 -1.98 -17.58 16 5 C -0.03 -1.19 6.28 88.46 0.56 -0.64 16 6 N -0.49 -18.90 10.49 -190.30 -2.00 -20.89 16 7 C 0.10 3.98 11.10 84.23 0.93 4.91 16 8 C -0.33 -13.68 6.19 23.88 0.15 -13.53 16 9 C 0.59 25.54 7.63 86.45 0.66 26.20 16 10 O -0.57 -26.25 16.52 -4.32 -0.07 -26.32 16 11 N -0.59 -23.74 2.46 -830.87 -2.04 -25.78 16 12 C 0.20 8.31 3.74 85.63 0.32 8.63 16 13 C -0.53 -26.03 7.77 25.60 0.20 -25.83 16 14 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 15 C 0.05 2.46 5.20 84.65 0.44 2.90 16 16 N -0.92 -49.45 13.96 21.45 0.30 -49.15 16 17 Si 0.89 34.83 27.00 68.60 1.85 36.68 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.23 -7.84 6.54 99.48 0.65 -7.19 16 21 C 0.12 4.25 5.38 86.38 0.46 4.72 16 22 C -0.12 -3.40 5.46 30.59 0.17 -3.24 16 23 C 0.06 1.57 4.96 86.30 0.43 1.99 16 24 N -0.56 -12.88 5.02 -948.85 -4.76 -17.64 16 25 C 0.02 0.48 9.32 127.69 1.19 1.67 16 26 C 0.02 0.43 9.57 127.69 1.22 1.65 16 27 S 0.32 12.60 16.03 -56.49 -0.91 11.70 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.40 6.02 9.08 -74.06 -0.67 5.35 16 32 H 0.19 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.04 1.73 3.49 -20.57 -0.07 1.65 16 34 H 0.06 2.37 7.51 -2.39 -0.02 2.35 16 35 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.07 2.44 7.50 -2.39 -0.02 2.42 16 37 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.72 6.55 -2.39 -0.02 1.70 16 40 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 42 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 44 H 0.06 1.43 6.47 -2.39 -0.02 1.41 16 45 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 46 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 47 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -65.98 392.37 -1.88 -67.86 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.18 Total: 29.56 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 7.54 Total: 11.57 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -8.50 Total: -113.47 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.05 Total: -43.90 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 1.85 Total: 36.68 kcal Atomic # 16 Polarization: 12.60 SS G_CDS: -0.91 Total: 11.70 kcal Total: -65.98 -1.88 -67.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361680395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.682 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds