Wall clock time and date at job start Sat Apr 11 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 C 1.50698 * 109.47340 * 239.99738 * 2 1 3 5 5 H 1.07994 * 119.99833 * 239.99905 * 4 2 1 6 6 C 1.37880 * 119.99857 * 59.99948 * 4 2 1 7 7 N 1.31512 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47541 * 59.99728 * 8 6 4 10 10 H 1.48497 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46967 * 299.99758 * 8 6 4 12 12 N 1.46906 * 109.47090 * 119.99537 * 2 1 3 13 13 C 1.46903 * 110.99480 * 176.04806 * 12 2 1 14 14 C 1.38583 * 110.99914 * 300.00029 * 12 2 1 15 15 N 1.31213 * 126.47587 * 340.11421 * 14 12 2 16 16 N 1.28518 * 109.86128 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05471 * 359.97438 * 16 15 14 18 18 C 1.50703 * 126.34789 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.49994 * 8.79164 * 18 17 16 20 20 C 1.53003 * 117.49597 * 300.13070 * 18 17 16 21 21 N 1.36449 * 126.46743 * 160.08900 * 14 12 2 22 22 C 1.46497 * 127.13876 * 0.02562 * 21 14 12 23 23 C 1.50706 * 109.46984 * 271.75192 * 22 21 14 24 24 C 1.35051 * 125.61255 * 94.91088 * 23 22 21 25 25 C 1.40473 * 107.10851 * 179.85260 * 24 23 22 26 26 C 1.36546 * 106.70536 * 0.40512 * 25 24 23 27 27 C 1.43202 * 125.98956 * 179.73052 * 26 25 24 28 28 N 8.68695 * 56.30628 * 131.60434 * 2 1 3 29 29 O 1.34047 * 125.61971 * 275.21983 * 23 22 21 30 30 H 1.09003 * 109.47189 * 300.00177 * 1 2 3 31 31 H 1.09000 * 109.46924 * 60.00263 * 1 2 3 32 32 H 1.08993 * 109.46985 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99771 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46393 * 177.70449 * 13 12 2 35 35 H 1.08998 * 109.47437 * 297.70020 * 13 12 2 36 36 H 1.08997 * 109.47582 * 57.70679 * 13 12 2 37 37 H 1.08994 * 115.54834 * 154.46354 * 18 17 16 38 38 H 1.09003 * 117.50006 * 359.97438 * 19 18 17 39 39 H 1.08997 * 117.50192 * 145.02556 * 19 18 17 40 40 H 1.09003 * 117.49514 * 214.98304 * 20 18 17 41 41 H 1.08997 * 117.50040 * 359.97438 * 20 18 17 42 42 H 1.08999 * 109.47408 * 31.75147 * 22 21 14 43 43 H 1.09002 * 109.46869 * 151.75549 * 22 21 14 44 44 H 1.08004 * 126.44827 * 359.97438 * 24 23 22 45 45 H 1.08001 * 126.64983 * 180.15377 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4208 -5.2203 11 1 3.8064 -1.1209 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5753 -0.0639 2.3519 15 7 1.1418 1.1707 2.4495 16 7 0.8103 1.4223 3.6654 17 6 1.0104 0.3716 4.4096 18 6 0.7466 0.2618 5.8893 19 6 0.0015 1.4165 6.5617 20 6 1.4986 1.2213 6.8140 21 7 1.5055 -0.6124 3.5994 22 6 1.8822 -1.9732 3.9896 23 6 0.7003 -2.8916 3.8136 24 6 0.4496 -3.6507 2.7251 25 6 -0.7419 -4.3514 2.9756 26 6 -1.1670 -3.9719 4.2164 27 6 -2.3496 -4.4341 4.8786 28 7 -3.2891 -4.7991 5.4045 29 8 -0.2782 -3.0852 4.7091 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 3.8236 -1.2746 2.1052 35 1 3.8008 -1.3877 0.3290 36 1 3.9182 0.2035 1.1180 37 1 0.5530 -0.7451 6.2588 38 1 -0.2977 2.2559 5.9339 39 1 -0.6821 1.1693 7.3739 40 1 1.7993 0.8455 7.7920 41 1 2.1843 1.9315 6.3521 42 1 2.7054 -2.3162 3.3629 43 1 2.1940 -1.9785 5.0341 44 1 1.0527 -3.7096 1.8311 45 1 -1.2296 -5.0513 2.3132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:04 Heat of formation + Delta-G solvation = 166.979926 kcal Electronic energy + Delta-G solvation = -30076.524780 eV Core-core repulsion = 26099.145980 eV Total energy + Delta-G solvation = -3977.378800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.12925 -43.68319 -38.95906 -37.90152 -37.83450 -36.48099 -34.77133 -34.29452 -31.92943 -31.23520 -30.67575 -28.32783 -27.37729 -26.08992 -24.98723 -23.82866 -23.28642 -23.14430 -22.83307 -21.33348 -20.69363 -20.43758 -18.60988 -18.11354 -17.89375 -17.21778 -17.01519 -16.87448 -16.27348 -16.16228 -15.53559 -15.43515 -15.15396 -14.94842 -14.82592 -14.58363 -14.46795 -14.04269 -14.01875 -13.74667 -13.64021 -13.42331 -13.07003 -12.95553 -12.73916 -12.67936 -12.49702 -12.30830 -12.19191 -12.08049 -12.03818 -11.84538 -11.55993 -11.41339 -11.24241 -11.09438 -10.99574 -10.51643 -10.15931 -9.75293 -9.09908 -8.07346 -6.22193 -0.26674 0.60715 0.88964 1.02758 1.49709 1.52149 1.57492 1.60456 1.75754 1.85748 2.11913 2.46348 2.82405 2.96213 3.01949 3.24569 3.32401 3.45219 3.72336 3.80433 3.92507 3.98454 4.08358 4.13288 4.24581 4.45725 4.50867 4.60716 4.62805 4.77299 4.81881 4.82706 4.86719 4.90441 4.96899 5.03385 5.09612 5.16042 5.22954 5.30553 5.31890 5.48174 5.58214 5.70284 5.77217 5.92717 6.02057 6.07539 6.20410 6.62311 6.88837 7.47095 7.86347 8.99386 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.004094 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.583111 B = 6837.212244 C = 8670.850181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.244 3.756 3 H -0.025 1.025 4 C -0.520 4.520 5 H 0.082 0.918 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.295 1.295 11 H -0.266 1.266 12 N -0.449 5.449 13 C 0.040 3.960 14 C 0.378 3.622 15 N -0.367 5.367 16 N -0.329 5.329 17 C 0.210 3.790 18 C -0.094 4.094 19 C -0.155 4.155 20 C -0.136 4.136 21 N -0.475 5.475 22 C 0.189 3.811 23 C -0.005 4.005 24 C -0.171 4.171 25 C -0.106 4.106 26 C 0.026 3.974 27 C 0.312 3.688 28 N -0.413 5.413 29 O -0.157 6.157 30 H 0.011 0.989 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.012 0.988 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.176 0.824 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -11.060 18.112 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 H -0.007 1.007 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.174 5.174 13 C -0.107 4.107 14 C 0.021 3.979 15 N -0.209 5.209 16 N -0.167 5.167 17 C -0.058 4.058 18 C -0.114 4.114 19 C -0.193 4.193 20 C -0.175 4.175 21 N -0.171 5.171 22 C 0.068 3.932 23 C -0.058 4.058 24 C -0.191 4.191 25 C -0.128 4.128 26 C -0.027 4.027 27 C -0.002 4.002 28 N -0.092 5.092 29 O -0.052 6.052 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.031 0.969 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.193 0.807 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.958 -10.407 18.621 21.536 hybrid contribution 0.654 -0.219 -1.435 1.592 sum 3.612 -10.626 17.186 20.526 Atomic orbital electron populations 1.21573 0.97977 0.98491 0.99246 1.18902 0.92079 0.90762 0.84473 1.00728 1.21341 1.31884 1.12936 0.89649 0.90019 1.25782 0.95144 0.95555 1.02249 1.70089 1.37526 1.24325 1.24187 0.85480 0.78900 0.78650 0.77808 1.19004 1.22079 1.19050 1.59165 1.12059 1.48264 0.97923 1.22447 0.83341 1.00629 1.04245 1.22962 1.00639 0.88287 0.86027 1.74714 1.21473 1.12689 1.12071 1.73835 1.20781 1.24483 0.97576 1.24349 1.00394 0.85231 0.95805 1.20312 1.10047 0.99171 0.81907 1.23059 0.96080 0.97961 1.02164 1.23143 0.94454 0.99761 1.00101 1.46305 1.50998 1.12909 1.06875 1.20681 0.91273 0.74230 1.07053 1.22874 0.92023 1.01220 0.89719 1.22019 0.98753 0.98627 0.99741 1.22325 0.95921 1.00775 0.93822 1.16465 0.90953 1.00583 0.94653 1.23569 0.90871 0.93152 0.92649 1.81386 1.11116 1.09758 1.06891 1.83980 1.29110 1.49812 1.42313 0.97045 0.92202 0.95073 0.93033 0.89114 0.88397 0.96945 0.83579 0.89954 0.85453 0.84397 0.89838 0.82827 0.83114 0.80686 0.79505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.97 8.80 71.98 0.63 -5.33 16 2 C 0.24 12.18 1.73 44.17 0.08 12.25 16 3 H -0.02 -1.48 7.92 -2.38 -0.02 -1.50 16 4 C -0.52 -26.18 7.95 25.60 0.20 -25.97 16 5 H 0.08 3.75 6.40 -2.91 -0.02 3.74 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 8 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 9 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.45 -17.38 4.66 -710.98 -3.31 -20.69 16 13 C 0.04 1.27 9.06 127.69 1.16 2.43 16 14 C 0.38 14.49 6.05 260.11 1.57 16.07 16 15 N -0.37 -16.89 9.97 -58.01 -0.58 -17.47 16 16 N -0.33 -13.34 11.79 -49.53 -0.58 -13.92 16 17 C 0.21 6.37 7.59 137.64 1.04 7.41 16 18 C -0.09 -1.86 5.84 -11.54 -0.07 -1.93 16 19 C -0.15 -2.90 10.15 30.62 0.31 -2.59 16 20 C -0.14 -2.11 10.24 30.62 0.31 -1.80 16 21 N -0.47 -13.43 2.79 -518.91 -1.45 -14.88 16 22 C 0.19 3.17 6.54 85.64 0.56 3.73 16 23 C -0.01 -0.10 6.90 24.95 0.17 0.07 16 24 C -0.17 -3.36 10.77 22.08 0.24 -3.13 16 25 C -0.11 -1.91 10.84 22.42 0.24 -1.67 16 26 C 0.03 0.53 7.08 23.12 0.16 0.69 16 27 C 0.31 6.84 15.89 88.32 1.40 8.24 16 28 N -0.41 -10.44 18.54 19.01 0.35 -10.08 16 29 O -0.16 -3.22 10.67 -5.72 -0.06 -3.28 16 30 H 0.01 0.57 6.20 -2.39 -0.01 0.55 16 31 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 32 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.09 1.98 6.54 -2.38 -0.02 1.97 16 35 H 0.10 3.05 6.32 -2.39 -0.02 3.03 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.15 2.13 8.11 -2.39 -0.02 2.11 16 38 H 0.08 2.04 7.92 -2.39 -0.02 2.02 16 39 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.15 1.96 6.51 -2.39 -0.02 1.94 16 43 H 0.15 1.36 7.85 -2.39 -0.02 1.34 16 44 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 45 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.38 386.29 6.15 -68.24 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.04 Total: 12.29 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 8.48 Total: 9.56 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.33 Total: -129.80 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.06 Total: -3.28 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -74.38 6.15 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.216 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds