Wall clock time and date at job start Sat Apr 11 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47397 * 2 1 4 4 C 1.50702 * 109.46908 * 119.99578 * 2 1 3 5 5 H 1.08002 * 120.00235 * 119.99726 * 4 2 1 6 6 C 1.37878 * 120.00044 * 300.00055 * 4 2 1 7 7 N 1.31523 * 119.99760 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00019 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47104 * 90.00187 * 8 6 4 10 10 H 1.48506 * 109.47159 * 210.00206 * 8 6 4 11 11 H 1.48500 * 109.47323 * 330.00011 * 8 6 4 12 12 N 1.46902 * 109.47272 * 239.99462 * 2 1 3 13 13 C 1.46904 * 110.99491 * 306.04884 * 12 2 1 14 14 C 1.38575 * 110.99795 * 69.99808 * 12 2 1 15 15 N 1.31212 * 126.47914 * 293.48102 * 14 12 2 16 16 N 1.28524 * 109.86288 * 180.25743 * 15 14 12 17 17 C 1.30294 * 110.05458 * 359.74040 * 16 15 14 18 18 C 1.50701 * 126.34673 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.50226 * 8.79274 * 18 17 16 20 20 C 1.52997 * 117.50020 * 300.12700 * 18 17 16 21 21 N 1.36460 * 126.46878 * 113.30456 * 14 12 2 22 22 C 1.46494 * 127.13618 * 0.02562 * 21 14 12 23 23 C 1.50696 * 109.47356 * 266.64014 * 22 21 14 24 24 C 1.35047 * 125.61367 * 90.00254 * 23 22 21 25 25 C 1.40477 * 107.10919 * 179.97438 * 24 23 22 26 26 C 1.36546 * 106.70594 * 0.02562 * 25 24 23 27 27 C 1.43200 * 125.98999 * 180.02562 * 26 25 24 28 28 N 8.02496 * 124.46802 * 341.63729 * 2 1 3 29 29 O 1.34047 * 125.61895 * 270.26675 * 23 22 21 30 30 H 1.09006 * 109.47043 * 300.00406 * 1 2 3 31 31 H 1.08994 * 109.46814 * 60.00195 * 1 2 3 32 32 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99498 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46526 * 191.68439 * 13 12 2 35 35 H 1.08997 * 109.47647 * 311.67828 * 13 12 2 36 36 H 1.08995 * 109.47260 * 71.68901 * 13 12 2 37 37 H 1.09011 * 115.54568 * 154.46042 * 18 17 16 38 38 H 1.09004 * 117.49522 * 359.97438 * 19 18 17 39 39 H 1.08997 * 117.50051 * 145.01766 * 19 18 17 40 40 H 1.08999 * 117.50084 * 214.97951 * 20 18 17 41 41 H 1.09001 * 117.50122 * 359.97438 * 20 18 17 42 42 H 1.09006 * 109.47060 * 146.64026 * 22 21 14 43 43 H 1.09002 * 109.47225 * 26.64333 * 22 21 14 44 44 H 1.07993 * 126.45086 * 359.97438 * 24 23 22 45 45 H 1.07996 * 126.64971 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8589 3.5567 8 14 0.6259 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9772 1.9956 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 1.4342 -2.0356 -1.3076 14 6 1.7680 0.0523 -2.3405 15 7 0.5897 0.3324 -2.8451 16 7 0.7273 1.0383 -3.9102 17 6 1.9910 1.2534 -4.1434 18 6 2.5660 2.0370 -5.2952 19 6 1.5886 2.8160 -6.1776 20 6 2.2547 1.5447 -6.7099 21 7 2.6989 0.6358 -3.1498 22 6 4.1548 0.6022 -2.9908 23 6 4.6043 1.8172 -2.2210 24 6 4.7233 1.8978 -0.8782 25 6 5.1682 3.1964 -0.5799 26 6 5.2988 3.8500 -1.7716 27 6 5.7296 5.2045 -1.9458 28 7 6.0717 6.2792 -2.0843 29 8 4.9471 2.9975 -2.7559 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.9033 -0.5276 4.4376 34 1 1.9614 -2.6008 -2.0762 35 1 1.5260 -2.5501 -0.3511 36 1 0.3811 -1.9523 -1.5759 37 1 3.5474 2.4781 -5.1203 38 1 0.5295 2.7613 -5.9253 39 1 1.9269 3.7692 -6.5836 40 1 3.0311 1.6622 -7.4659 41 1 1.6344 0.6538 -6.8077 42 1 4.6276 0.5989 -3.9730 43 1 4.4402 -0.2985 -2.4472 44 1 4.5156 1.1118 -0.1673 45 1 5.3674 3.6000 0.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:07 Heat of formation + Delta-G solvation = 174.099760 kcal Electronic energy + Delta-G solvation = -30382.716291 eV Core-core repulsion = 26405.646230 eV Total energy + Delta-G solvation = -3977.070061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.19539 -43.74445 -39.26845 -37.94140 -37.89972 -36.48255 -34.74815 -34.33943 -32.11525 -31.82948 -30.33651 -28.32056 -27.26609 -26.89719 -25.06406 -23.81014 -23.30594 -23.12221 -22.82136 -21.21588 -20.84799 -20.45728 -18.79625 -18.37141 -17.94436 -17.34209 -17.12391 -16.96709 -16.51122 -16.17229 -15.47093 -15.38362 -15.30898 -15.11473 -14.81703 -14.61879 -14.39339 -14.19128 -14.09769 -14.02291 -13.71022 -13.53625 -13.40555 -13.21739 -13.02808 -12.87046 -12.65716 -12.40365 -12.31883 -12.06124 -11.92313 -11.65426 -11.53559 -11.39429 -11.31389 -11.15236 -11.03120 -10.76704 -9.87691 -9.80616 -9.55165 -8.27718 -6.28939 -0.31681 0.50618 0.83219 0.96480 1.28219 1.35865 1.41068 1.52036 1.70550 1.73114 2.08537 2.29749 2.77573 2.91943 2.94707 3.08048 3.25995 3.42450 3.70189 3.74496 3.93149 3.97161 4.08073 4.14806 4.25194 4.40434 4.41882 4.47351 4.57197 4.58115 4.63088 4.74485 4.81745 4.83302 4.86113 4.95373 4.97176 4.99711 5.15948 5.18034 5.25529 5.30523 5.31737 5.54931 5.63060 5.71690 5.87924 6.04612 6.20624 6.58783 6.77431 7.34990 7.70767 8.87150 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.005157 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.097920 B = 5428.554021 C = 7500.531331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.208 3.792 3 H 0.026 0.974 4 C -0.491 4.491 5 H 0.066 0.934 6 C 0.039 3.961 7 N -0.932 5.932 8 Si 0.923 3.077 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.265 1.265 12 N -0.450 5.450 13 C 0.045 3.955 14 C 0.361 3.639 15 N -0.343 5.343 16 N -0.325 5.325 17 C 0.219 3.781 18 C -0.100 4.100 19 C -0.152 4.152 20 C -0.135 4.135 21 N -0.464 5.464 22 C 0.192 3.808 23 C -0.002 4.002 24 C -0.180 4.180 25 C -0.111 4.111 26 C 0.034 3.966 27 C 0.314 3.686 28 N -0.408 5.408 29 O -0.150 6.150 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 4.001 -18.100 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 H 0.044 0.956 4 C -0.529 4.529 5 H 0.084 0.916 6 C -0.160 4.160 7 N -0.571 5.571 8 Si 0.753 3.247 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.191 1.191 12 N -0.175 5.175 13 C -0.102 4.102 14 C 0.004 3.996 15 N -0.185 5.185 16 N -0.164 5.164 17 C -0.048 4.048 18 C -0.120 4.120 19 C -0.190 4.190 20 C -0.173 4.173 21 N -0.158 5.158 22 C 0.071 3.929 23 C -0.055 4.055 24 C -0.200 4.200 25 C -0.133 4.133 26 C -0.019 4.019 27 C -0.001 4.001 28 N -0.087 5.087 29 O -0.044 6.044 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.161 0.839 38 H 0.105 0.895 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.106 0.894 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.182 0.818 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.151 5.655 -18.550 20.669 hybrid contribution -0.462 0.231 1.441 1.531 sum 6.689 5.886 -17.109 19.290 Atomic orbital electron populations 1.22796 0.99852 1.01830 0.99701 1.19494 0.90001 0.93783 0.86658 0.95647 1.20873 1.30836 1.12997 0.88232 0.91585 1.25304 0.96629 0.98371 0.95720 1.69946 1.47033 1.41727 0.98439 0.86266 0.79803 0.81738 0.76874 1.20443 1.22292 1.19052 1.59077 1.58675 1.02681 0.97066 1.22333 0.97438 0.86990 1.03484 1.22748 0.84442 0.98428 0.94009 1.74603 1.21256 1.15978 1.06705 1.73868 1.15744 1.15564 1.11217 1.24367 0.88243 0.98924 0.93268 1.20342 1.01423 1.03706 0.86577 1.23070 0.98085 0.97311 1.00513 1.23149 1.03396 0.98051 0.92714 1.46412 1.08488 1.40272 1.20582 1.20579 0.74983 0.93066 1.04278 1.22824 1.03308 0.86055 0.93340 1.22041 1.03480 0.98957 0.95543 1.22294 0.98947 0.93384 0.98718 1.16370 1.12302 0.86191 0.87062 1.23435 0.92736 0.89884 0.94051 1.81366 1.10414 1.11148 1.05751 1.83973 1.65459 1.19907 1.35107 0.94967 0.92589 0.92068 0.92403 0.90261 0.89859 0.94892 0.83938 0.89459 0.85675 0.84662 0.89393 0.82971 0.82986 0.81807 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -8.04 7.88 71.98 0.57 -7.47 16 2 C 0.21 9.02 1.87 44.17 0.08 9.11 16 3 H 0.03 1.19 7.11 -2.39 -0.02 1.17 16 4 C -0.49 -24.47 8.38 25.60 0.21 -24.26 16 5 H 0.07 3.54 7.44 -2.91 -0.02 3.52 16 6 C 0.04 2.08 5.45 84.65 0.46 2.54 16 7 N -0.93 -53.07 13.96 21.45 0.30 -52.77 16 8 Si 0.92 43.40 24.37 68.60 1.67 45.08 16 9 H -0.28 -12.98 6.87 99.48 0.68 -12.29 16 10 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.27 -12.20 6.53 99.48 0.65 -11.55 16 12 N -0.45 -16.37 4.74 -711.00 -3.37 -19.74 16 13 C 0.04 1.51 8.49 127.69 1.08 2.60 16 14 C 0.36 12.53 6.27 260.11 1.63 14.16 16 15 N -0.34 -13.34 9.80 -58.01 -0.57 -13.91 16 16 N -0.33 -11.47 11.79 -49.54 -0.58 -12.05 16 17 C 0.22 6.04 7.59 137.64 1.04 7.08 16 18 C -0.10 -1.81 5.92 -11.54 -0.07 -1.88 16 19 C -0.15 -2.51 10.15 30.62 0.31 -2.20 16 20 C -0.13 -1.84 10.24 30.62 0.31 -1.52 16 21 N -0.46 -12.57 2.79 -518.92 -1.45 -14.02 16 22 C 0.19 3.54 6.52 85.63 0.56 4.10 16 23 C 0.00 -0.04 6.90 24.95 0.17 0.13 16 24 C -0.18 -4.44 10.77 22.08 0.24 -4.20 16 25 C -0.11 -2.43 10.84 22.42 0.24 -2.18 16 26 C 0.03 0.72 7.08 23.12 0.16 0.89 16 27 C 0.31 7.06 15.89 88.33 1.40 8.46 16 28 N -0.41 -10.42 18.54 19.01 0.35 -10.07 16 29 O -0.15 -3.13 10.67 -5.74 -0.06 -3.19 16 30 H 0.03 1.47 3.27 -2.38 -0.01 1.46 16 31 H 0.06 2.45 6.00 -2.39 -0.01 2.44 16 32 H 0.06 2.60 6.59 -2.39 -0.02 2.59 16 33 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.08 3.06 6.62 -2.39 -0.02 3.04 16 36 H 0.03 1.16 6.67 -2.39 -0.02 1.14 16 37 H 0.14 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.09 1.87 7.92 -2.39 -0.02 1.86 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.15 1.55 8.01 -2.38 -0.02 1.53 16 43 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -66.94 380.31 5.67 -61.27 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.96 Total: 14.06 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 8.42 Total: 5.35 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.32 Total: -122.56 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -0.06 Total: -3.19 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.08 kcal Total: -66.94 5.67 -61.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.367 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds