Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46989 * 2 1 4 4 N 1.46498 * 109.46901 * 239.99773 * 2 1 3 5 5 C 1.34778 * 119.99794 * 85.00266 * 4 2 1 6 6 O 1.21583 * 120.00514 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99802 * 179.97438 * 5 4 2 8 8 C 1.39960 * 119.99867 * 184.52184 * 7 5 4 9 9 C 1.39288 * 119.94437 * 144.37253 * 8 7 5 10 10 C 1.38486 * 120.42661 * 180.02562 * 9 8 7 11 11 C 1.37683 * 120.32175 * 359.96858 * 10 9 8 12 12 C 1.40735 * 119.88519 * 0.02702 * 11 10 9 13 13 C 1.41406 * 120.21130 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99924 * 155.37410 * 13 12 11 15 15 C 1.39924 * 120.00308 * 335.37376 * 13 12 11 16 16 N 1.30831 * 119.99912 * 344.59940 * 15 13 12 17 17 Si 1.86801 * 120.00357 * 164.59598 * 15 13 12 18 18 H 1.48500 * 109.46812 * 60.00107 * 17 15 13 19 19 H 1.48498 * 109.47176 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46786 * 300.00324 * 17 15 13 21 21 C 1.38233 * 119.94702 * 324.09168 * 8 7 5 22 22 C 1.50697 * 109.47092 * 119.99912 * 2 1 3 23 23 N 1.30505 * 126.37194 * 74.68757 * 22 2 1 24 24 N 1.28571 * 109.66629 * 179.88524 * 23 22 2 25 25 C 1.30673 * 109.63774 * 0.48833 * 24 23 22 26 26 N 1.35171 * 107.33294 * 359.60680 * 25 24 23 27 27 C 1.46794 * 111.15442 * 180.23780 * 26 25 24 28 28 C 1.54437 * 105.55451 * 342.93340 * 27 26 25 29 29 C 1.51340 * 142.72264 * 179.46806 * 25 24 23 30 30 H 1.08998 * 109.47202 * 300.00175 * 1 2 3 31 31 H 1.08998 * 109.47243 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00388 * 264.99619 * 4 2 1 34 34 H 0.97003 * 120.00373 * 4.52352 * 7 5 4 35 35 H 1.08001 * 119.78436 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.83592 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.05837 * 180.02562 * 11 10 9 38 38 H 0.96999 * 120.00288 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.15890 * 359.97438 * 21 8 7 40 40 H 1.09000 * 110.23334 * 101.95294 * 27 26 25 41 41 H 1.09004 * 110.23270 * 223.91264 * 27 26 25 42 42 H 1.09000 * 110.95478 * 267.49139 * 28 27 26 43 43 H 1.08994 * 110.95566 * 143.75455 * 28 27 26 44 44 H 1.08997 * 110.47392 * 315.27396 * 29 25 24 45 45 H 1.09009 * 110.47020 * 77.74625 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5967 -0.6536 -3.4574 8 6 2.8205 0.0645 -4.6378 9 6 3.8818 -0.2808 -5.4711 10 6 4.1127 0.4233 -6.6411 11 6 3.2943 1.4729 -6.9937 12 6 2.2180 1.8331 -6.1616 13 6 1.3735 2.9103 -6.5168 14 1 0.3621 2.9504 -6.1401 15 6 1.8481 3.9241 -7.3563 16 7 3.1328 4.0483 -7.5702 17 14 0.6475 5.1001 -8.1717 18 1 -0.1185 5.8278 -7.1282 19 1 1.3973 6.0738 -9.0054 20 1 -0.2907 4.3332 -9.0302 21 6 1.9844 1.1116 -4.9775 22 6 2.0324 -0.7104 1.2304 23 7 2.0287 -1.9992 1.4357 24 7 2.5334 -2.2549 2.5903 25 6 2.8726 -1.1383 3.1783 26 7 2.5669 -0.1289 2.3329 27 6 2.9211 1.1727 2.9119 28 6 3.1012 0.9179 4.4244 29 6 3.4745 -0.5818 4.4505 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 2.7653 -1.6085 -3.4314 35 1 4.5288 -1.1029 -5.2031 36 1 4.9387 0.1476 -7.2800 37 1 3.4780 2.0188 -7.9073 38 1 3.4619 4.7509 -8.1525 39 1 1.1582 1.3769 -4.3344 40 1 3.8519 1.5377 2.4777 41 1 2.1188 1.8911 2.7436 42 1 2.1710 1.0976 4.9635 43 1 3.9088 1.5280 4.8290 44 1 3.0385 -1.0682 5.3231 45 1 4.5574 -0.7073 4.4465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466577326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 86.205909 kcal Electronic energy + Delta-G solvation = -28575.498231 eV Core-core repulsion = 24594.616806 eV Total energy + Delta-G solvation = -3980.881425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.73033 -40.00118 -37.77551 -37.43043 -35.71991 -34.32622 -33.08903 -32.56447 -30.81010 -29.76276 -29.69276 -27.89817 -27.71611 -25.25010 -24.29296 -23.04729 -21.89543 -21.42268 -20.85111 -20.41941 -20.00896 -18.20307 -17.74467 -17.43658 -16.36210 -16.14709 -15.33703 -15.32658 -15.07971 -14.82537 -14.60663 -14.29430 -14.07163 -13.95666 -13.72035 -13.63212 -13.30430 -12.89650 -12.77431 -12.31230 -12.26682 -12.06134 -11.98473 -11.78039 -11.62700 -11.54372 -11.27188 -11.07466 -10.66479 -10.61709 -10.46179 -10.43174 -10.15098 -9.72138 -9.54498 -9.36216 -9.18410 -9.03650 -8.81263 -7.38695 -6.83990 -6.65519 -4.28498 1.41758 1.99361 2.51576 2.78152 2.92062 3.08311 3.10947 3.14638 3.26022 3.26718 3.66828 3.76839 3.93690 3.99743 4.09023 4.22220 4.55411 4.69619 4.71034 4.79146 4.81258 4.98814 5.02103 5.11252 5.22787 5.28889 5.40721 5.62551 5.75460 5.79033 5.84352 6.10244 6.29315 6.42229 6.45948 6.50263 6.82563 6.84202 7.09784 7.16750 7.30354 7.39346 7.73440 7.88070 8.05656 8.15631 8.30467 8.42914 8.47058 8.71917 8.93517 9.02088 9.07603 10.27668 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.002296 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.281806 B =12192.478308 C =12877.869819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.257 3.743 3 H 0.103 0.897 4 N -0.741 5.741 5 C 0.702 3.298 6 O -0.564 6.564 7 N -0.678 5.678 8 C 0.165 3.835 9 C -0.262 4.262 10 C -0.093 4.093 11 C -0.174 4.174 12 C 0.117 3.883 13 C -0.455 4.455 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.797 5.797 17 Si 0.909 3.091 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.208 4.208 22 C 0.192 3.808 23 N -0.276 5.276 24 N -0.279 5.279 25 C 0.155 3.845 26 N -0.487 5.487 27 C 0.097 3.903 28 C -0.128 4.128 29 C -0.040 4.040 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -4.874 21.824 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.148 3.852 3 H 0.121 0.879 4 N -0.399 5.399 5 C 0.402 3.598 6 O -0.439 6.439 7 N -0.324 5.324 8 C 0.073 3.927 9 C -0.284 4.284 10 C -0.112 4.112 11 C -0.194 4.194 12 C 0.114 3.886 13 C -0.485 4.485 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.423 5.423 17 Si 0.734 3.266 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.230 4.230 22 C -0.075 4.075 23 N -0.117 5.117 24 N -0.120 5.120 25 C -0.113 4.113 26 N -0.179 5.179 27 C -0.025 4.025 28 C -0.166 4.166 29 C -0.079 4.079 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.229 0.771 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.104 -5.005 21.300 21.880 hybrid contribution 0.075 0.965 -0.094 0.973 sum 0.179 -4.040 21.206 21.588 Atomic orbital electron populations 1.22192 0.92864 1.03408 1.03210 1.18736 0.94410 0.94918 0.77124 0.87934 1.45039 1.72882 1.14029 1.07990 1.15883 0.78801 0.85122 0.79946 1.90982 1.55128 1.13943 1.83894 1.42529 1.69167 1.11024 1.09719 1.17234 0.95800 0.95170 0.84464 1.20037 1.01301 1.06670 1.00389 1.20452 0.98581 0.96389 0.95781 1.21402 0.98734 0.97942 1.01308 1.17518 0.91503 0.90754 0.88852 1.19522 0.99637 1.04434 1.24934 0.90554 1.25894 0.95387 0.98042 0.94935 1.69821 1.13716 1.29292 1.29424 0.86355 0.80974 0.79587 0.79695 1.19056 1.20413 1.18870 1.21089 1.02628 1.01009 0.98251 1.24526 1.01210 0.90622 0.91154 1.74370 1.17801 1.09914 1.09594 1.73997 1.14764 1.21573 1.01646 1.26003 1.03182 0.85777 0.96317 1.47159 1.45398 1.10846 1.14459 1.22528 1.03312 0.82481 0.94154 1.22820 1.04446 0.95655 0.93699 1.20671 1.01585 0.94016 0.91667 0.91910 0.90029 0.91322 0.76330 0.77070 0.89403 0.89100 0.86089 0.90982 0.86962 0.88271 0.88137 0.89067 0.87530 0.87842 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.47 37.16 0.35 -1.51 16 2 C 0.26 3.32 3.12 -69.08 -0.22 3.11 16 3 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 4 N -0.74 -10.63 5.07 -59.81 -0.30 -10.93 16 5 C 0.70 13.08 8.37 -86.91 -0.73 12.35 16 6 O -0.56 -12.83 13.49 5.29 0.07 -12.76 16 7 N -0.68 -12.60 5.34 -14.27 -0.08 -12.68 16 8 C 0.17 3.83 6.28 -83.76 -0.53 3.30 16 9 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 10 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 11 C -0.17 -4.64 8.69 -38.84 -0.34 -4.97 16 12 C 0.12 3.25 5.58 -106.85 -0.60 2.66 16 13 C -0.46 -12.61 9.06 -37.75 -0.34 -12.96 16 14 H 0.08 2.05 7.89 -52.49 -0.41 1.64 16 15 C 0.07 1.93 5.19 -17.35 -0.09 1.84 16 16 N -0.80 -21.17 10.82 55.55 0.60 -20.57 16 17 Si 0.91 19.26 29.59 -169.99 -5.03 14.23 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.21 -5.47 8.43 -38.69 -0.33 -5.80 16 22 C 0.19 2.41 7.09 -154.89 -1.10 1.31 16 23 N -0.28 -3.99 11.93 32.82 0.39 -3.60 16 24 N -0.28 -3.92 12.22 32.93 0.40 -3.52 16 25 C 0.15 1.61 8.69 -154.84 -1.35 0.26 16 26 N -0.49 -4.88 3.62 -109.38 -0.40 -5.27 16 27 C 0.10 0.53 7.77 -3.13 -0.02 0.51 16 28 C -0.13 -0.34 7.17 -25.15 -0.18 -0.52 16 29 C -0.04 -0.19 6.85 -26.74 -0.18 -0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 5.14 8.39 -40.82 -0.34 4.80 16 34 H 0.40 5.84 8.84 -40.82 -0.36 5.47 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.12 3.30 6.07 -52.49 -0.32 2.98 16 38 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 39 H 0.11 3.05 6.27 -52.49 -0.33 2.72 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.11 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -35.29 377.87 -11.02 -46.31 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.94 Total: 12.81 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -6.43 Total: -9.71 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.62 Total: -56.58 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.29 -11.02 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.516 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds