Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46989 * 2 1 4 4 N 1.46498 * 109.46901 * 239.99773 * 2 1 3 5 5 C 1.34778 * 119.99794 * 85.00266 * 4 2 1 6 6 O 1.21583 * 120.00514 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99802 * 179.97438 * 5 4 2 8 8 C 1.39960 * 119.99867 * 184.52184 * 7 5 4 9 9 C 1.39288 * 119.94437 * 144.37253 * 8 7 5 10 10 C 1.38486 * 120.42661 * 180.02562 * 9 8 7 11 11 C 1.37683 * 120.32175 * 359.96858 * 10 9 8 12 12 C 1.40735 * 119.88519 * 0.02702 * 11 10 9 13 13 C 1.41406 * 120.21130 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99924 * 155.37410 * 13 12 11 15 15 C 1.39924 * 120.00308 * 335.37376 * 13 12 11 16 16 N 1.30831 * 119.99912 * 344.59940 * 15 13 12 17 17 Si 1.86801 * 120.00357 * 164.59598 * 15 13 12 18 18 H 1.48500 * 109.46812 * 60.00107 * 17 15 13 19 19 H 1.48498 * 109.47176 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46786 * 300.00324 * 17 15 13 21 21 C 1.38233 * 119.94702 * 324.09168 * 8 7 5 22 22 C 1.50697 * 109.47092 * 119.99912 * 2 1 3 23 23 N 1.30505 * 126.37194 * 74.68757 * 22 2 1 24 24 N 1.28571 * 109.66629 * 179.88524 * 23 22 2 25 25 C 1.30673 * 109.63774 * 0.48833 * 24 23 22 26 26 N 1.35171 * 107.33294 * 359.60680 * 25 24 23 27 27 C 1.46794 * 111.15442 * 180.23780 * 26 25 24 28 28 C 1.54437 * 105.55451 * 342.93340 * 27 26 25 29 29 C 1.51340 * 142.72264 * 179.46806 * 25 24 23 30 30 H 1.08998 * 109.47202 * 300.00175 * 1 2 3 31 31 H 1.08998 * 109.47243 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00388 * 264.99619 * 4 2 1 34 34 H 0.97003 * 120.00373 * 4.52352 * 7 5 4 35 35 H 1.08001 * 119.78436 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.83592 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.05837 * 180.02562 * 11 10 9 38 38 H 0.96999 * 120.00288 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.15890 * 359.97438 * 21 8 7 40 40 H 1.09000 * 110.23334 * 101.95294 * 27 26 25 41 41 H 1.09004 * 110.23270 * 223.91264 * 27 26 25 42 42 H 1.09000 * 110.95478 * 267.49139 * 28 27 26 43 43 H 1.08994 * 110.95566 * 143.75455 * 28 27 26 44 44 H 1.08997 * 110.47392 * 315.27396 * 29 25 24 45 45 H 1.09009 * 110.47020 * 77.74625 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5967 -0.6536 -3.4574 8 6 2.8205 0.0645 -4.6378 9 6 3.8818 -0.2808 -5.4711 10 6 4.1127 0.4233 -6.6411 11 6 3.2943 1.4729 -6.9937 12 6 2.2180 1.8331 -6.1616 13 6 1.3735 2.9103 -6.5168 14 1 0.3621 2.9504 -6.1401 15 6 1.8481 3.9241 -7.3563 16 7 3.1328 4.0483 -7.5702 17 14 0.6475 5.1001 -8.1717 18 1 -0.1185 5.8278 -7.1282 19 1 1.3973 6.0738 -9.0054 20 1 -0.2907 4.3332 -9.0302 21 6 1.9844 1.1116 -4.9775 22 6 2.0324 -0.7104 1.2304 23 7 2.0287 -1.9992 1.4357 24 7 2.5334 -2.2549 2.5903 25 6 2.8726 -1.1383 3.1783 26 7 2.5669 -0.1289 2.3329 27 6 2.9211 1.1727 2.9119 28 6 3.1012 0.9179 4.4244 29 6 3.4745 -0.5818 4.4505 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 2.7653 -1.6085 -3.4314 35 1 4.5288 -1.1029 -5.2031 36 1 4.9387 0.1476 -7.2800 37 1 3.4780 2.0188 -7.9073 38 1 3.4619 4.7509 -8.1525 39 1 1.1582 1.3769 -4.3344 40 1 3.8519 1.5377 2.4777 41 1 2.1188 1.8911 2.7436 42 1 2.1710 1.0976 4.9635 43 1 3.9088 1.5280 4.8290 44 1 3.0385 -1.0682 5.3231 45 1 4.5574 -0.7073 4.4465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 63.669751 kcal Electronic energy + Delta-G solvation = -28576.475472 eV Core-core repulsion = 24594.616806 eV Total energy + Delta-G solvation = -3981.858666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.55271 -41.54988 -39.29197 -38.29272 -37.06741 -36.09427 -34.88420 -33.45562 -31.87148 -31.72939 -30.49355 -29.46144 -28.53217 -27.23563 -25.37118 -23.79023 -23.16228 -22.70965 -22.27224 -21.67220 -21.32954 -19.65178 -19.45991 -18.20772 -17.67414 -17.12725 -17.07898 -16.73468 -16.43673 -16.17990 -15.86806 -15.71220 -15.14738 -14.95997 -14.73943 -14.55203 -14.35225 -14.22518 -14.06691 -13.89401 -13.53067 -13.24240 -13.12989 -12.80878 -12.78241 -12.58004 -12.55915 -12.50594 -12.25992 -12.21211 -12.00267 -11.59404 -11.49621 -11.32943 -11.09794 -11.03198 -10.68028 -10.43606 -10.18293 -9.37016 -8.70462 -8.59000 -6.34712 0.56856 0.93748 1.04205 1.21949 1.37083 1.48978 1.52975 1.60049 1.79446 2.09359 2.22541 2.63090 2.75850 3.06169 3.17783 3.42150 3.66504 3.76776 3.82544 3.93163 3.99097 4.31519 4.38956 4.45436 4.48424 4.50602 4.65649 4.69195 4.75841 4.81766 4.97488 5.03026 5.06088 5.07694 5.12140 5.14256 5.15848 5.18866 5.28460 5.36125 5.67486 5.73626 5.83484 6.05454 6.13456 6.15805 6.37829 6.70932 6.96404 6.97396 7.03669 7.49479 7.55493 8.36028 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.002296 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.281806 B =12192.478308 C =12877.869819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.260 3.740 3 H 0.095 0.905 4 N -0.722 5.722 5 C 0.703 3.297 6 O -0.607 6.607 7 N -0.669 5.669 8 C 0.173 3.827 9 C -0.252 4.252 10 C -0.091 4.091 11 C -0.199 4.199 12 C 0.087 3.913 13 C -0.498 4.498 14 H 0.066 0.934 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.259 1.259 21 C -0.233 4.233 22 C 0.180 3.820 23 N -0.303 5.303 24 N -0.328 5.328 25 C 0.162 3.838 26 N -0.488 5.488 27 C 0.081 3.919 28 C -0.111 4.111 29 C -0.040 4.040 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.417 0.583 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.288 0.712 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.139 0.861 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -4.870 23.730 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.152 3.848 3 H 0.113 0.887 4 N -0.380 5.380 5 C 0.404 3.596 6 O -0.485 6.485 7 N -0.317 5.317 8 C 0.080 3.920 9 C -0.274 4.274 10 C -0.110 4.110 11 C -0.219 4.219 12 C 0.084 3.916 13 C -0.528 4.528 14 H 0.084 0.916 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.187 1.187 20 H -0.183 1.183 21 C -0.255 4.255 22 C -0.088 4.088 23 N -0.144 5.144 24 N -0.168 5.168 25 C -0.107 4.107 26 N -0.179 5.179 27 C -0.039 4.039 28 C -0.149 4.149 29 C -0.079 4.079 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.249 0.751 34 H 0.254 0.746 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.147 -5.060 23.263 23.835 hybrid contribution -0.153 0.868 -0.514 1.020 sum 0.994 -4.192 22.749 23.154 Atomic orbital electron populations 1.22101 0.92077 1.03422 1.03238 1.18743 0.94975 0.94369 0.76761 0.88699 1.44862 1.71659 1.14288 1.07167 1.15973 0.78301 0.84649 0.80719 1.90965 1.56858 1.16070 1.84657 1.42303 1.68994 1.11876 1.08501 1.17278 0.94911 0.94214 0.85634 1.20437 1.00798 1.06884 0.99240 1.20816 0.98544 0.95159 0.96508 1.21376 0.99782 0.99551 1.01224 1.17865 0.92460 0.91523 0.89781 1.19736 0.99619 1.06057 1.27379 0.91567 1.26748 0.97256 0.99302 0.94734 1.69866 1.15285 1.30221 1.29822 0.85239 0.78465 0.77274 0.78594 1.18841 1.18672 1.18290 1.21043 1.03411 1.02944 0.98099 1.24222 1.02292 0.90530 0.91733 1.74254 1.18660 1.11001 1.10436 1.73881 1.16981 1.23740 1.02215 1.26998 1.01058 0.84904 0.97706 1.47459 1.44379 1.12504 1.13534 1.23014 1.03959 0.80838 0.96063 1.22897 1.06236 0.94321 0.91427 1.21036 1.02335 0.95108 0.89447 0.89806 0.92006 0.91246 0.75140 0.74566 0.85389 0.85974 0.87468 0.90112 0.88962 0.87606 0.87173 0.87968 0.84335 0.86168 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.47 71.98 0.68 -2.88 16 2 C 0.26 6.74 3.12 44.25 0.14 6.88 16 3 H 0.10 2.63 7.58 -2.39 -0.02 2.61 16 4 N -0.72 -20.67 5.07 -461.41 -2.34 -23.01 16 5 C 0.70 26.43 8.37 179.05 1.50 27.93 16 6 O -0.61 -28.59 13.49 -3.98 -0.05 -28.65 16 7 N -0.67 -24.41 5.34 -317.32 -1.69 -26.10 16 8 C 0.17 8.00 6.28 38.09 0.24 8.24 16 9 C -0.25 -10.89 9.97 22.58 0.23 -10.67 16 10 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 11 C -0.20 -10.89 8.69 22.75 0.20 -10.69 16 12 C 0.09 5.04 5.58 -21.31 -0.12 4.92 16 13 C -0.50 -29.05 9.06 23.46 0.21 -28.83 16 14 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 15 C 0.03 1.80 5.19 85.25 0.44 2.25 16 16 N -0.83 -45.00 10.82 21.82 0.24 -44.76 16 17 Si 0.98 40.26 29.59 68.60 2.03 42.29 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 C -0.23 -12.76 8.43 22.85 0.19 -12.57 16 22 C 0.18 4.47 7.09 137.94 0.98 5.44 16 23 N -0.30 -8.74 11.93 -50.09 -0.60 -9.34 16 24 N -0.33 -9.11 12.22 -49.74 -0.61 -9.72 16 25 C 0.16 3.12 8.69 138.24 1.20 4.32 16 26 N -0.49 -9.12 3.62 -499.97 -1.81 -10.94 16 27 C 0.08 0.70 7.77 86.81 0.67 1.37 16 28 C -0.11 -0.16 7.17 31.62 0.23 0.07 16 29 C -0.04 -0.25 6.85 30.59 0.21 -0.04 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 10.33 8.39 -92.71 -0.78 9.55 16 34 H 0.42 11.54 8.84 -92.71 -0.82 10.72 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.11 6.06 6.07 -2.91 -0.02 6.04 16 38 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 39 H 0.09 5.33 6.27 -2.91 -0.02 5.31 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.14 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -81.83 377.87 1.84 -80.00 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.54 Total: 38.53 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 7.22 Total: -8.31 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.82 Total: -123.86 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -81.83 1.84 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.669 kcal (2) G-P(sol) polarization free energy of solvation -81.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds