Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47038 * 2 1 4 4 C 1.46758 * 124.34715 * 90.00343 * 3 2 1 5 5 C 1.54484 * 105.47173 * 162.98317 * 4 3 2 6 6 C 1.54628 * 101.76639 * 25.41511 * 5 4 3 7 7 H 1.08999 * 110.48717 * 94.01198 * 6 5 4 8 8 N 1.46902 * 110.48778 * 216.52913 * 6 5 4 9 9 C 1.48538 * 110.99433 * 295.55176 * 8 6 5 10 10 C 1.55191 * 103.23527 * 200.25582 * 9 8 6 11 11 C 1.54598 * 102.80330 * 37.43691 * 10 9 8 12 12 H 1.09001 * 110.30724 * 219.05049 * 11 10 9 13 13 N 1.46497 * 110.30845 * 96.97594 * 11 10 9 14 14 C 1.34780 * 119.99566 * 87.79674 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.47902 * 111.00017 * 178.15993 * 8 6 5 27 27 C 1.34655 * 124.31060 * 270.12896 * 3 2 1 28 28 O 1.21277 * 125.07601 * 0.39815 * 27 3 2 29 29 H 1.09003 * 109.46871 * 300.00057 * 1 2 3 30 30 H 1.08997 * 109.47299 * 59.99733 * 1 2 3 31 31 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46871 * 239.99943 * 2 1 3 33 33 H 1.08997 * 109.47299 * 120.00267 * 2 1 3 34 34 H 1.08998 * 110.24807 * 43.98257 * 4 3 2 35 35 H 1.08998 * 110.24921 * 281.97636 * 4 3 2 36 36 H 1.09004 * 110.96984 * 267.29778 * 5 4 3 37 37 H 1.08999 * 110.96923 * 143.53516 * 5 4 3 38 38 H 1.08991 * 110.66763 * 318.71581 * 9 8 6 39 39 H 1.09005 * 110.66368 * 81.67917 * 9 8 6 40 40 H 1.08999 * 110.76616 * 279.12680 * 10 9 8 41 41 H 1.09002 * 110.80200 * 155.76549 * 10 9 8 42 42 H 0.96995 * 120.00423 * 267.78980 * 13 11 10 43 43 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 44 44 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 45 45 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.91764 * 26.48777 * 26 8 6 47 47 H 1.09000 * 109.91208 * 265.19024 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1745 3.3441 0.7487 6 6 2.7695 3.4754 -0.7378 7 1 1.9761 4.2139 -0.8533 8 7 3.9328 3.8400 -1.5574 9 6 4.4431 5.1853 -1.1885 10 6 5.2629 5.6089 -2.4363 11 6 4.4207 5.0490 -3.6057 12 1 5.0716 4.6464 -4.3818 13 7 3.5589 6.0967 -4.1588 14 6 4.0216 6.9054 -5.1327 15 8 5.1515 6.7661 -5.5509 16 6 3.1353 7.9834 -5.7013 17 16 4.0366 8.8931 -6.9805 18 6 2.8014 10.0556 -7.4571 19 1 1.8341 10.0432 -6.9767 20 6 3.0710 10.9868 -8.4505 21 7 4.2497 11.0016 -9.0362 22 14 1.7612 12.2189 -8.9562 23 1 0.5330 11.9936 -8.1524 24 1 2.2611 13.5973 -8.7213 25 1 1.4478 12.0448 -10.3973 26 6 3.5674 3.9258 -2.9880 27 6 2.2690 2.0977 -1.1122 28 8 2.1178 1.6983 -2.2473 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.8325 1.5530 1.9383 35 1 1.3639 2.5308 1.6429 36 1 4.2333 3.1033 0.8446 37 1 2.9308 4.2516 1.3010 38 1 3.6178 5.8762 -1.0174 39 1 5.0824 5.1260 -0.3076 40 1 6.2529 5.1531 -2.4213 41 1 5.3379 6.6944 -2.5001 42 1 2.6554 6.2083 -3.8242 43 1 2.2450 7.5298 -6.1366 44 1 2.8421 8.6694 -4.9066 45 1 4.4383 11.6526 -9.7302 46 1 2.5089 4.1664 -3.0871 47 1 3.7839 2.9796 -3.4839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479945169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -56.957385 kcal Electronic energy + Delta-G solvation = -27226.773842 eV Core-core repulsion = 23342.835591 eV Total energy + Delta-G solvation = -3883.938251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14516 -39.64299 -38.06081 -36.82097 -34.80500 -33.31939 -32.42000 -31.02605 -29.49170 -29.35375 -27.91509 -26.60830 -25.45658 -23.95070 -22.65629 -21.33201 -21.23333 -19.97662 -19.54471 -17.84614 -17.49759 -17.14390 -16.53839 -16.30024 -15.97266 -15.44003 -14.80177 -14.78491 -14.70730 -14.43579 -14.26258 -13.98142 -13.93274 -13.77146 -13.21601 -13.10417 -12.97393 -12.78365 -12.58900 -12.48460 -12.37294 -12.26362 -11.80685 -11.63540 -11.55465 -11.49697 -11.42536 -11.06615 -11.02373 -10.99123 -10.74607 -10.00293 -9.79634 -9.39137 -9.17065 -9.07025 -8.92420 -8.77557 -8.21736 -6.48632 -6.20925 -3.91100 2.17059 2.51850 3.03387 3.10614 3.22053 3.28444 3.32880 3.57286 3.75029 3.83097 4.03042 4.21137 4.34382 4.45936 4.51656 4.58732 4.70146 4.71911 4.88131 4.89610 4.98070 5.02031 5.08695 5.14287 5.18001 5.22514 5.24770 5.28563 5.38633 5.42235 5.49511 5.63540 5.69455 5.77715 5.82166 5.89966 6.01327 6.05526 6.13564 6.15660 6.37168 6.54669 6.68614 6.76193 7.60701 7.71802 7.81874 8.36272 8.63713 9.24511 10.86539 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.001935 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.227396 B =14468.101229 C =14987.750632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.621 5.621 4 C 0.105 3.895 5 C -0.124 4.124 6 C 0.040 3.960 7 H 0.081 0.919 8 N -0.498 5.498 9 C 0.036 3.964 10 C -0.132 4.132 11 C 0.134 3.866 12 H 0.100 0.900 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.040 3.960 27 C 0.529 3.471 28 O -0.516 6.516 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.395 0.605 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.055 0.945 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -19.846 26.589 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.357 5.357 4 C -0.019 4.019 5 C -0.162 4.162 6 C -0.073 4.073 7 H 0.098 0.902 8 N -0.224 5.224 9 C -0.092 4.092 10 C -0.171 4.171 11 C 0.028 3.972 12 H 0.118 0.882 13 N -0.388 5.388 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.088 4.088 27 C 0.315 3.685 28 O -0.391 6.391 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.229 0.771 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.499 -20.713 25.219 32.822 hybrid contribution -3.380 1.612 0.337 3.760 sum -6.880 -19.101 25.556 32.639 Atomic orbital electron populations 1.22171 0.95757 1.02477 1.02462 1.21351 0.94339 0.80917 1.03263 1.48289 1.66457 1.13760 1.07155 1.22081 0.99392 0.92858 0.87544 1.22703 1.01694 0.98542 0.93272 1.22537 0.94055 0.95617 0.95045 0.90185 1.64868 1.27214 1.27550 1.02725 1.23353 0.98433 0.88220 0.99149 1.22968 0.99172 1.01863 0.93103 1.21747 0.92098 0.87147 0.96175 0.88206 1.46190 1.17182 1.35001 1.40392 1.20309 0.87871 0.81643 0.78254 1.90703 1.19327 1.69849 1.58990 1.23539 1.02846 0.99382 1.04667 1.85397 1.19722 1.37203 1.40971 1.22911 1.01081 1.19158 1.25170 0.90914 1.24997 0.96192 0.97195 0.95263 1.70029 1.20784 1.35077 1.24357 0.86114 0.80722 0.80195 0.78443 1.19647 1.20574 1.20564 1.23151 0.98114 0.99577 0.87996 1.20615 0.76425 0.86977 0.84450 1.90732 1.52562 1.74982 1.20790 0.92471 0.92183 0.91318 0.89920 0.90303 0.90072 0.91110 0.88583 0.89129 0.93420 0.89580 0.89788 0.89993 0.77121 0.89269 0.89326 0.92241 0.92683 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.12 0.74 6.65 -4.04 -0.03 0.71 16 3 N -0.62 -4.50 2.94 -172.34 -0.51 -5.00 16 4 C 0.10 0.43 7.35 -3.12 -0.02 0.40 16 5 C -0.12 -0.57 6.14 -25.10 -0.15 -0.72 16 6 C 0.04 0.32 2.30 -67.72 -0.16 0.16 16 7 H 0.08 0.60 8.05 -51.93 -0.42 0.19 16 8 N -0.50 -4.72 5.09 -222.34 -1.13 -5.85 16 9 C 0.04 0.30 5.96 -1.76 -0.01 0.29 16 10 C -0.13 -1.45 6.80 -24.73 -0.17 -1.62 16 11 C 0.13 1.70 3.31 -66.57 -0.22 1.48 16 12 H 0.10 1.48 7.60 -51.93 -0.39 1.08 16 13 N -0.73 -10.12 5.07 -52.49 -0.27 -10.39 16 14 C 0.53 10.05 7.85 -10.98 -0.09 9.97 16 15 O -0.51 -11.76 15.54 5.56 0.09 -11.68 16 16 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.04 0.45 5.01 -2.75 -0.01 0.44 16 27 C 0.53 5.42 7.60 -10.75 -0.08 5.34 16 28 O -0.52 -7.28 15.62 5.56 0.09 -7.19 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.62 7.94 -51.93 -0.41 0.20 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.10 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.05 0.37 7.99 -51.93 -0.42 -0.04 16 39 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 42 H 0.39 4.43 8.31 -40.82 -0.34 4.09 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.05 0.63 7.17 -51.93 -0.37 0.25 16 47 H 0.10 1.28 7.56 -51.93 -0.39 0.88 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -36.61 395.67 -10.18 -46.79 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.77 Total: 0.35 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.14 Total: -0.10 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.17 Total: -46.85 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.61 -10.18 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.163 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds