Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47038 * 2 1 4 4 C 1.46758 * 124.34715 * 90.00343 * 3 2 1 5 5 C 1.54484 * 105.47173 * 162.98317 * 4 3 2 6 6 C 1.54628 * 101.76639 * 25.41511 * 5 4 3 7 7 H 1.08999 * 110.48717 * 94.01198 * 6 5 4 8 8 N 1.46902 * 110.48778 * 216.52913 * 6 5 4 9 9 C 1.48538 * 110.99433 * 295.55176 * 8 6 5 10 10 C 1.55191 * 103.23527 * 200.25582 * 9 8 6 11 11 C 1.54598 * 102.80330 * 37.43691 * 10 9 8 12 12 H 1.09001 * 110.30724 * 219.05049 * 11 10 9 13 13 N 1.46497 * 110.30845 * 96.97594 * 11 10 9 14 14 C 1.34780 * 119.99566 * 87.79674 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.47902 * 111.00017 * 178.15993 * 8 6 5 27 27 C 1.34655 * 124.31060 * 270.12896 * 3 2 1 28 28 O 1.21277 * 125.07601 * 0.39815 * 27 3 2 29 29 H 1.09003 * 109.46871 * 300.00057 * 1 2 3 30 30 H 1.08997 * 109.47299 * 59.99733 * 1 2 3 31 31 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46871 * 239.99943 * 2 1 3 33 33 H 1.08997 * 109.47299 * 120.00267 * 2 1 3 34 34 H 1.08998 * 110.24807 * 43.98257 * 4 3 2 35 35 H 1.08998 * 110.24921 * 281.97636 * 4 3 2 36 36 H 1.09004 * 110.96984 * 267.29778 * 5 4 3 37 37 H 1.08999 * 110.96923 * 143.53516 * 5 4 3 38 38 H 1.08991 * 110.66763 * 318.71581 * 9 8 6 39 39 H 1.09005 * 110.66368 * 81.67917 * 9 8 6 40 40 H 1.08999 * 110.76616 * 279.12680 * 10 9 8 41 41 H 1.09002 * 110.80200 * 155.76549 * 10 9 8 42 42 H 0.96995 * 120.00423 * 267.78980 * 13 11 10 43 43 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 44 44 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 45 45 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.91764 * 26.48777 * 26 8 6 47 47 H 1.09000 * 109.91208 * 265.19024 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1745 3.3441 0.7487 6 6 2.7695 3.4754 -0.7378 7 1 1.9761 4.2139 -0.8533 8 7 3.9328 3.8400 -1.5574 9 6 4.4431 5.1853 -1.1885 10 6 5.2629 5.6089 -2.4363 11 6 4.4207 5.0490 -3.6057 12 1 5.0716 4.6464 -4.3818 13 7 3.5589 6.0967 -4.1588 14 6 4.0216 6.9054 -5.1327 15 8 5.1515 6.7661 -5.5509 16 6 3.1353 7.9834 -5.7013 17 16 4.0366 8.8931 -6.9805 18 6 2.8014 10.0556 -7.4571 19 1 1.8341 10.0432 -6.9767 20 6 3.0710 10.9868 -8.4505 21 7 4.2497 11.0016 -9.0362 22 14 1.7612 12.2189 -8.9562 23 1 0.5330 11.9936 -8.1524 24 1 2.2611 13.5973 -8.7213 25 1 1.4478 12.0448 -10.3973 26 6 3.5674 3.9258 -2.9880 27 6 2.2690 2.0977 -1.1122 28 8 2.1178 1.6983 -2.2473 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.8325 1.5530 1.9383 35 1 1.3639 2.5308 1.6429 36 1 4.2333 3.1033 0.8446 37 1 2.9308 4.2516 1.3010 38 1 3.6178 5.8762 -1.0174 39 1 5.0824 5.1260 -0.3076 40 1 6.2529 5.1531 -2.4213 41 1 5.3379 6.6944 -2.5001 42 1 2.6554 6.2083 -3.8242 43 1 2.2450 7.5298 -6.1366 44 1 2.8421 8.6694 -4.9066 45 1 4.4383 11.6526 -9.7302 46 1 2.5089 4.1664 -3.0871 47 1 3.7839 2.9796 -3.4839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479945169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -84.712361 kcal Electronic energy + Delta-G solvation = -27227.977388 eV Core-core repulsion = 23342.835591 eV Total energy + Delta-G solvation = -3885.141797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83565 -40.86617 -39.16228 -37.53130 -35.74709 -34.59669 -34.19596 -31.99280 -30.69321 -29.99560 -28.88382 -27.69244 -27.28507 -24.43180 -23.30793 -22.42105 -22.09979 -21.12508 -20.20338 -19.84130 -18.15402 -17.89629 -17.85154 -17.37365 -16.89216 -16.80787 -16.51609 -16.14096 -15.80267 -15.30235 -15.18704 -14.86696 -14.71082 -14.54526 -14.45139 -14.35506 -13.98622 -13.80128 -13.48512 -13.43778 -13.17202 -13.14749 -12.93297 -12.80206 -12.75312 -12.63172 -12.36484 -12.30245 -12.14786 -11.98998 -11.85478 -11.71414 -11.16820 -10.97564 -10.74132 -10.28605 -10.17191 -9.72412 -9.55917 -8.67798 -8.35735 -6.13785 1.25107 1.40691 1.44004 1.47186 1.57143 1.57817 2.00189 2.20581 2.26684 2.95023 2.98398 3.19821 3.30799 3.45996 3.59719 3.80425 3.95138 3.98212 4.04235 4.12749 4.16509 4.25163 4.27227 4.27825 4.38111 4.45727 4.48136 4.48798 4.64074 4.71158 4.82585 4.85561 4.93263 4.97559 4.98648 5.02416 5.10407 5.16451 5.25300 5.38091 5.41136 5.62191 5.74525 5.87186 6.10758 6.19069 6.43879 7.05556 7.13823 7.20336 8.73748 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.001935 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.227396 B =14468.101229 C =14987.750632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.618 5.618 4 C 0.101 3.899 5 C -0.114 4.114 6 C 0.038 3.962 7 H 0.089 0.911 8 N -0.504 5.504 9 C 0.047 3.953 10 C -0.130 4.130 11 C 0.132 3.868 12 H 0.072 0.928 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.129 4.129 17 S -0.149 6.149 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.055 3.945 27 C 0.513 3.487 28 O -0.571 6.571 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.412 0.588 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.055 0.945 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -19.592 30.226 36.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.352 5.352 4 C -0.021 4.021 5 C -0.152 4.152 6 C -0.074 4.074 7 H 0.106 0.894 8 N -0.230 5.230 9 C -0.080 4.080 10 C -0.169 4.169 11 C 0.026 3.974 12 H 0.090 0.910 13 N -0.361 5.361 14 C 0.323 3.677 15 O -0.439 6.439 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.822 3.178 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.074 4.074 27 C 0.300 3.700 28 O -0.449 6.449 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.249 0.751 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.609 -20.490 28.955 35.912 hybrid contribution -2.741 1.374 -0.675 3.140 sum -8.351 -19.116 28.280 35.141 Atomic orbital electron populations 1.22110 0.95275 1.03144 1.01649 1.21484 0.94729 0.80596 1.03609 1.48497 1.65010 1.14104 1.07593 1.22376 1.00596 0.92648 0.86457 1.22765 1.01775 1.00024 0.90598 1.22661 0.93662 0.94298 0.96814 0.89394 1.64850 1.28253 1.28335 1.01535 1.23356 0.98661 0.87595 0.98345 1.22909 0.99396 1.00944 0.93629 1.21810 0.92168 0.87215 0.96172 0.90963 1.45912 1.17992 1.33687 1.38529 1.20063 0.86962 0.81830 0.78876 1.90694 1.21181 1.71202 1.60841 1.23372 1.02347 0.99452 1.02881 1.85582 1.22891 1.39088 1.44667 1.23235 1.01243 1.19333 1.25565 0.89943 1.26147 0.98695 0.99370 0.95053 1.70191 1.23224 1.36225 1.25095 0.84889 0.77713 0.77080 0.78153 1.18051 1.19788 1.20003 1.22867 0.97572 0.97516 0.89450 1.21166 0.76245 0.88213 0.84377 1.90697 1.55031 1.76254 1.22959 0.91078 0.95001 0.90017 0.92278 0.87221 0.87795 0.89155 0.88633 0.86341 0.92030 0.87082 0.89827 0.91156 0.75114 0.87531 0.87015 0.91974 0.92652 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.12 1.25 6.65 86.38 0.57 1.83 16 3 N -0.62 -7.84 2.94 -817.63 -2.40 -10.24 16 4 C 0.10 0.43 7.35 86.83 0.64 1.07 16 5 C -0.11 -0.59 6.14 31.65 0.19 -0.40 16 6 C 0.04 0.51 2.30 44.91 0.10 0.62 16 7 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 8 N -0.50 -8.79 5.09 -857.34 -4.36 -13.15 16 9 C 0.05 0.66 5.96 86.74 0.52 1.17 16 10 C -0.13 -2.74 6.80 31.89 0.22 -2.53 16 11 C 0.13 3.38 3.31 45.87 0.15 3.53 16 12 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 13 N -0.71 -19.14 5.07 -438.37 -2.22 -21.36 16 14 C 0.54 20.39 7.85 87.66 0.69 21.08 16 15 O -0.56 -26.64 15.54 -3.03 -0.05 -26.68 16 16 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 17 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 18 C -0.55 -31.51 9.50 67.96 0.65 -30.86 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 22 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.05 1.24 5.01 86.45 0.43 1.67 16 27 C 0.51 10.22 7.60 87.86 0.67 10.89 16 28 O -0.57 -16.84 15.62 -3.02 -0.05 -16.89 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.91 7.94 -2.39 -0.02 0.90 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 36 H 0.10 0.57 8.09 -2.39 -0.02 0.55 16 37 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.06 0.73 7.99 -2.39 -0.02 0.71 16 39 H 0.11 1.08 8.08 -2.38 -0.02 1.06 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 42 H 0.41 8.50 8.31 -92.71 -0.77 7.73 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 46 H 0.06 1.24 7.17 -2.39 -0.02 1.22 16 47 H 0.07 2.08 7.56 -2.39 -0.02 2.06 16 Total: -1.00 -84.86 395.67 -1.27 -86.12 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.19 Total: 18.34 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.47 Total: 3.60 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -8.70 Total: -100.93 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -0.09 Total: -43.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -84.86 -1.27 -86.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479945169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.409 kcal (2) G-P(sol) polarization free energy of solvation -84.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds