Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.34330 * 126.44398 * 119.70800 * 4 2 1 6 6 N 1.34475 * 107.67083 * 179.88209 * 5 4 2 7 7 C 1.30253 * 108.70063 * 0.39235 * 6 5 4 8 8 C 1.50702 * 125.62541 * 179.73508 * 7 6 5 9 9 N 1.46899 * 109.47003 * 90.02575 * 8 7 6 10 10 C 1.46906 * 111.00224 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47200 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47462 * 294.99971 * 11 10 9 13 13 C 1.52996 * 109.47175 * 174.99901 * 11 10 9 14 14 N 1.46499 * 109.47066 * 55.00096 * 11 10 9 15 15 C 1.34781 * 119.99963 * 204.99558 * 14 11 10 16 16 O 1.21283 * 119.99696 * 0.02562 * 15 14 11 17 17 C 1.50698 * 120.00101 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47103 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99805 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00143 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99676 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46923 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46917 * 119.99551 * 23 21 19 26 26 H 1.48503 * 109.46958 * 239.99795 * 23 21 19 27 27 O 1.33977 * 108.76013 * 359.76045 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07998 * 126.16581 * 0.02562 * 5 4 2 36 36 H 1.08992 * 109.47365 * 210.02649 * 8 7 6 37 37 H 1.09000 * 109.46554 * 330.03167 * 8 7 6 38 38 H 1.00908 * 111.00203 * 303.95646 * 9 8 7 39 39 H 1.08998 * 109.46914 * 300.00486 * 10 9 8 40 40 H 1.08997 * 109.46785 * 60.00080 * 10 9 8 41 41 H 1.08996 * 109.47650 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.47333 * 300.00234 * 13 11 10 43 43 H 1.08999 * 109.47261 * 59.99865 * 13 11 10 44 44 H 0.96996 * 120.00545 * 24.99965 * 14 11 10 45 45 H 1.09001 * 109.47147 * 300.00135 * 17 15 14 46 46 H 1.08996 * 109.47055 * 60.00367 * 17 15 14 47 47 H 0.97000 * 119.99338 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8033 -1.8101 1.2580 6 7 3.0277 -2.1190 2.5474 7 6 2.4130 -1.2501 3.2981 8 6 2.4056 -1.2415 4.8051 9 7 3.5339 -0.4388 5.2957 10 6 3.5592 -0.4082 6.7642 11 6 4.7448 0.4356 7.2364 12 1 5.6757 -0.0489 6.9421 13 6 4.6998 0.5710 8.7597 14 7 4.6719 1.7652 6.6256 15 6 5.7934 2.4952 6.4647 16 8 6.8629 2.0512 6.8251 17 6 5.7185 3.8627 5.8359 18 16 7.3772 4.5831 5.7592 19 6 7.0039 6.1312 5.0050 20 1 5.9842 6.3723 4.7431 21 6 8.0203 7.0403 4.7464 22 7 9.2631 6.7461 5.0652 23 14 7.6246 8.6812 3.9462 24 1 6.1646 8.7668 3.6884 25 1 8.0334 9.7848 4.8516 26 1 8.3612 8.7959 2.6618 27 8 1.7878 -0.3654 2.5098 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.1775 -2.3478 0.3994 36 1 1.4705 -0.8096 5.1614 37 1 2.4984 -2.2627 5.1746 38 1 4.4086 -0.7807 4.9263 39 1 2.6320 0.0291 7.1344 40 1 3.6601 -1.4238 7.1470 41 1 5.5441 1.1725 9.0962 42 1 3.7688 1.0555 9.0541 43 1 4.7539 -0.4183 9.2142 44 1 3.8166 2.1202 6.3371 45 1 5.3129 3.7773 4.8277 46 1 5.0712 4.5031 6.4349 47 1 9.9734 7.3817 4.8849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483209375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = -28.972123 kcal Electronic energy + Delta-G solvation = -26691.593797 eV Core-core repulsion = 22808.869078 eV Total energy + Delta-G solvation = -3882.724719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57552 -39.35658 -37.23952 -36.07252 -34.98525 -34.47527 -32.39088 -31.52852 -30.04857 -28.43612 -27.57201 -27.15994 -25.44517 -24.40712 -23.01684 -22.11424 -21.54585 -20.55618 -20.17427 -17.85389 -17.45221 -16.95769 -16.52767 -16.22166 -15.78593 -15.24870 -15.07965 -14.93495 -14.77245 -14.59560 -14.53527 -14.02091 -13.62467 -13.54068 -13.43427 -13.13040 -12.73455 -12.65185 -12.58115 -12.46917 -12.33584 -11.99514 -11.94341 -11.68261 -11.62881 -11.50812 -11.44451 -11.04841 -10.99615 -10.97045 -10.72213 -10.71922 -9.75961 -9.29682 -9.06911 -9.04015 -8.83974 -8.74705 -8.17257 -6.44529 -6.18097 -3.87582 1.16962 2.32346 2.42867 3.11045 3.21766 3.23957 3.30860 3.36488 3.58497 3.79535 3.99741 4.22840 4.24281 4.43668 4.55505 4.64150 4.71148 4.80843 4.95198 4.99364 5.03208 5.17024 5.19861 5.22995 5.23701 5.33696 5.35186 5.41436 5.41789 5.45310 5.56270 5.59715 5.73151 5.74399 5.83115 5.92450 5.98099 6.02387 6.03808 6.14912 6.23600 6.45296 6.76734 6.90457 7.49056 7.63771 7.88781 8.39455 8.75467 9.27438 10.89433 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.002754 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.413381 B =10165.486362 C =12979.800637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.031 4.031 5 C -0.045 4.045 6 N -0.477 5.477 7 C 0.191 3.809 8 C 0.158 3.842 9 N -0.683 5.683 10 C 0.053 3.947 11 C 0.146 3.854 12 H 0.086 0.914 13 C -0.162 4.162 14 N -0.721 5.721 15 C 0.534 3.466 16 O -0.524 6.524 17 C -0.152 4.152 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.187 6.187 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.182 0.818 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.354 0.646 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.401 0.599 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.960 -17.990 -4.642 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.085 4.085 5 C -0.183 4.183 6 N -0.207 5.207 7 C -0.016 4.016 8 C 0.028 3.972 9 N -0.316 5.316 10 C -0.076 4.076 11 C 0.040 3.960 12 H 0.104 0.896 13 C -0.221 4.221 14 N -0.375 5.375 15 C 0.320 3.680 16 O -0.398 6.398 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.681 4.681 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 O -0.073 6.073 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.199 0.801 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.174 0.826 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.235 0.765 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.006 -18.548 -3.825 26.830 hybrid contribution -1.874 1.335 -1.275 2.631 sum -20.880 -17.212 -5.101 27.536 Atomic orbital electron populations 1.21883 0.93482 1.02382 1.02889 1.19778 0.96484 0.96337 0.90165 1.21895 1.01988 0.94064 1.02933 1.23499 1.02590 0.98441 0.83975 1.23048 1.02481 0.97839 0.94974 1.70408 1.21279 1.26623 1.02368 1.25959 0.94030 0.86003 0.95620 1.20169 0.97243 0.98259 0.81546 1.60387 1.06529 1.56138 1.08571 1.22329 0.99639 0.99075 0.86605 1.20827 0.98388 0.84004 0.92779 0.89583 1.22152 1.02900 1.02195 0.94884 1.45860 1.10344 1.17186 1.64076 1.20251 0.83537 0.86431 0.77795 1.90687 1.28485 1.71527 1.49142 1.23510 1.08004 0.95748 1.02965 1.85367 1.00466 1.17331 1.80384 1.22915 0.96614 1.02387 1.46204 0.90944 1.24992 0.94455 0.98720 0.95485 1.70035 0.99519 1.35823 1.44983 0.86129 0.78525 0.82042 0.78873 1.19623 1.20594 1.20596 1.84381 1.58737 1.47950 1.16221 0.91997 0.92304 0.91352 0.87925 0.91828 0.91823 0.91362 0.80117 0.88092 0.90710 0.82645 0.89931 0.93213 0.91274 0.92414 0.91945 0.76526 0.89336 0.89438 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.01 -0.06 3.33 -91.78 -0.31 -0.37 16 3 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 4 C -0.03 -0.31 5.89 -35.69 -0.21 -0.52 16 5 C -0.04 -0.47 11.78 -17.77 -0.21 -0.68 16 6 N -0.48 -5.77 11.29 -11.10 -0.13 -5.89 16 7 C 0.19 2.09 7.86 -12.95 -0.10 1.99 16 8 C 0.16 1.24 6.31 -4.98 -0.03 1.21 16 9 N -0.68 -6.21 6.21 -115.06 -0.72 -6.93 16 10 C 0.05 0.40 5.24 -3.82 -0.02 0.38 16 11 C 0.15 1.61 2.81 -67.94 -0.19 1.42 16 12 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 13 C -0.16 -1.66 9.48 37.16 0.35 -1.30 16 14 N -0.72 -9.68 4.80 -53.81 -0.26 -9.94 16 15 C 0.53 10.09 7.81 -10.98 -0.09 10.00 16 16 O -0.52 -11.93 15.52 5.56 0.09 -11.85 16 17 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 18 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 O -0.19 -2.15 10.78 5.35 0.06 -2.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.35 3.73 8.72 -39.29 -0.34 3.39 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.40 4.59 8.60 -40.82 -0.35 4.24 16 45 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 412.62 15.07 6.22 6.22 Total: -1.00 -36.21 412.62 -8.76 -44.96 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.82 Total: 3.90 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.30 Total: -5.35 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.37 Total: -48.52 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.14 Total: -13.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.21 -8.76 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483209375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.993 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds