Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.34330 * 126.44398 * 119.70800 * 4 2 1 6 6 N 1.34475 * 107.67083 * 179.88209 * 5 4 2 7 7 C 1.30253 * 108.70063 * 0.39235 * 6 5 4 8 8 C 1.50702 * 125.62541 * 179.73508 * 7 6 5 9 9 N 1.46899 * 109.47003 * 90.02575 * 8 7 6 10 10 C 1.46906 * 111.00224 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47200 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47462 * 294.99971 * 11 10 9 13 13 C 1.52996 * 109.47175 * 174.99901 * 11 10 9 14 14 N 1.46499 * 109.47066 * 55.00096 * 11 10 9 15 15 C 1.34781 * 119.99963 * 204.99558 * 14 11 10 16 16 O 1.21283 * 119.99696 * 0.02562 * 15 14 11 17 17 C 1.50698 * 120.00101 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47103 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99805 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00143 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99676 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46923 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46917 * 119.99551 * 23 21 19 26 26 H 1.48503 * 109.46958 * 239.99795 * 23 21 19 27 27 O 1.33977 * 108.76013 * 359.76045 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.07998 * 126.16581 * 0.02562 * 5 4 2 36 36 H 1.08992 * 109.47365 * 210.02649 * 8 7 6 37 37 H 1.09000 * 109.46554 * 330.03167 * 8 7 6 38 38 H 1.00908 * 111.00203 * 303.95646 * 9 8 7 39 39 H 1.08998 * 109.46914 * 300.00486 * 10 9 8 40 40 H 1.08997 * 109.46785 * 60.00080 * 10 9 8 41 41 H 1.08996 * 109.47650 * 180.02562 * 13 11 10 42 42 H 1.09005 * 109.47333 * 300.00234 * 13 11 10 43 43 H 1.08999 * 109.47261 * 59.99865 * 13 11 10 44 44 H 0.96996 * 120.00545 * 24.99965 * 14 11 10 45 45 H 1.09001 * 109.47147 * 300.00135 * 17 15 14 46 46 H 1.08996 * 109.47055 * 60.00367 * 17 15 14 47 47 H 0.97000 * 119.99338 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8033 -1.8101 1.2580 6 7 3.0277 -2.1190 2.5474 7 6 2.4130 -1.2501 3.2981 8 6 2.4056 -1.2415 4.8051 9 7 3.5339 -0.4388 5.2957 10 6 3.5592 -0.4082 6.7642 11 6 4.7448 0.4356 7.2364 12 1 5.6757 -0.0489 6.9421 13 6 4.6998 0.5710 8.7597 14 7 4.6719 1.7652 6.6256 15 6 5.7934 2.4952 6.4647 16 8 6.8629 2.0512 6.8251 17 6 5.7185 3.8627 5.8359 18 16 7.3772 4.5831 5.7592 19 6 7.0039 6.1312 5.0050 20 1 5.9842 6.3723 4.7431 21 6 8.0203 7.0403 4.7464 22 7 9.2631 6.7461 5.0652 23 14 7.6246 8.6812 3.9462 24 1 6.1646 8.7668 3.6884 25 1 8.0334 9.7848 4.8516 26 1 8.3612 8.7959 2.6618 27 8 1.7878 -0.3654 2.5098 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.1775 -2.3478 0.3994 36 1 1.4705 -0.8096 5.1614 37 1 2.4984 -2.2627 5.1746 38 1 4.4086 -0.7807 4.9263 39 1 2.6320 0.0291 7.1344 40 1 3.6601 -1.4238 7.1470 41 1 5.5441 1.1725 9.0962 42 1 3.7688 1.0555 9.0541 43 1 4.7539 -0.4183 9.2142 44 1 3.8166 2.1202 6.3371 45 1 5.3129 3.7773 4.8277 46 1 5.0712 4.5031 6.4349 47 1 9.9734 7.3817 4.8849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483209375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = -57.459010 kcal Electronic energy + Delta-G solvation = -26692.829081 eV Core-core repulsion = 22808.869078 eV Total energy + Delta-G solvation = -3883.960003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.34857 -40.71079 -38.14915 -36.72453 -35.82714 -35.42923 -34.58578 -32.74515 -30.87352 -29.88164 -28.11679 -27.86077 -27.65758 -25.14164 -23.74890 -22.81052 -22.56640 -21.50112 -21.24658 -19.83590 -18.29525 -17.89058 -17.72897 -17.30340 -16.88379 -16.52711 -16.39656 -16.09458 -15.85176 -15.71494 -15.39035 -15.23668 -14.64995 -14.62348 -14.30704 -14.20604 -14.08190 -13.86819 -13.24415 -13.16907 -13.16034 -13.12068 -13.01758 -12.91273 -12.77456 -12.60111 -12.55114 -12.35348 -12.21533 -12.00426 -11.85445 -11.69118 -11.50163 -11.15877 -10.86856 -10.26823 -10.01139 -9.78832 -9.50625 -8.66064 -8.34824 -6.12546 0.40929 1.27998 1.40968 1.47633 1.58550 1.59527 1.69157 1.70162 2.26790 2.38027 2.91825 2.99137 3.25808 3.35178 3.60384 3.78267 3.88951 4.04356 4.06225 4.09124 4.15826 4.26488 4.31387 4.38148 4.44167 4.46900 4.51968 4.62918 4.71085 4.72970 4.75637 4.80866 4.82589 4.87800 4.95421 5.08712 5.13729 5.27123 5.28605 5.31131 5.33282 5.41705 5.60872 5.83208 6.10717 6.19994 6.62973 6.71146 7.06408 7.35667 8.74769 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.002754 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.413381 B =10165.486362 C =12979.800637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.008 4.008 3 C -0.150 4.150 4 C -0.036 4.036 5 C -0.063 4.063 6 N -0.504 5.504 7 C 0.182 3.818 8 C 0.161 3.839 9 N -0.696 5.696 10 C 0.064 3.936 11 C 0.142 3.858 12 H 0.060 0.940 13 C -0.157 4.157 14 N -0.695 5.695 15 C 0.534 3.466 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.151 6.151 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.273 1.273 27 O -0.202 6.202 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.201 0.799 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.343 0.657 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.414 0.586 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.075 -18.043 -5.251 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.089 4.089 5 C -0.201 4.201 6 N -0.235 5.235 7 C -0.025 4.025 8 C 0.032 3.968 9 N -0.329 5.329 10 C -0.064 4.064 11 C 0.037 3.963 12 H 0.078 0.922 13 C -0.215 4.215 14 N -0.348 5.348 15 C 0.320 3.680 16 O -0.449 6.449 17 C -0.279 4.279 18 S 0.076 5.924 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.199 1.199 27 O -0.088 6.088 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.218 0.782 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.251 0.749 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.190 -18.629 -4.427 29.309 hybrid contribution -0.973 1.235 -1.068 1.901 sum -23.163 -17.394 -5.495 29.483 Atomic orbital electron populations 1.21854 0.92497 1.02676 1.03166 1.19959 0.97255 0.95725 0.89722 1.21881 1.01013 0.94721 1.03113 1.24055 1.02203 0.98422 0.84262 1.23475 1.02914 0.98509 0.95214 1.70396 1.22155 1.27610 1.03296 1.26604 0.93560 0.85601 0.96759 1.20339 0.97482 0.99197 0.79758 1.60399 1.06335 1.56761 1.09405 1.22286 0.98664 0.99675 0.85801 1.21047 0.99172 0.82586 0.93463 0.92155 1.22092 1.02250 1.03284 0.93904 1.45659 1.09199 1.17533 1.62364 1.19957 0.84254 0.86080 0.77703 1.90676 1.30470 1.72304 1.51436 1.23352 1.03267 0.96904 1.04405 1.85533 1.07265 1.18782 1.80826 1.23227 0.97171 1.02555 1.46345 0.90134 1.26142 0.94086 1.03143 0.95847 1.70196 1.00826 1.37536 1.46252 0.84901 0.79025 0.76253 0.77734 1.18073 1.19789 1.19865 1.84382 1.59089 1.48373 1.16962 0.93213 0.91997 0.89551 0.85714 0.93394 0.93278 0.89408 0.78219 0.85996 0.89170 0.83955 0.87505 0.90773 0.94917 0.90466 0.89398 0.74897 0.88068 0.87537 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 71.98 0.66 -0.86 16 2 C -0.01 -0.10 3.33 -11.54 -0.04 -0.14 16 3 C -0.15 -2.22 9.18 71.98 0.66 -1.56 16 4 C -0.04 -0.69 5.89 24.79 0.15 -0.55 16 5 C -0.06 -1.29 11.78 83.39 0.98 -0.31 16 6 N -0.50 -11.99 11.29 -303.82 -3.43 -15.42 16 7 C 0.18 3.82 7.86 88.34 0.69 4.51 16 8 C 0.16 2.19 6.31 85.56 0.54 2.73 16 9 N -0.70 -11.33 6.21 -517.95 -3.22 -14.54 16 10 C 0.06 0.78 5.24 86.30 0.45 1.23 16 11 C 0.14 2.93 2.81 44.99 0.13 3.06 16 12 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 13 C -0.16 -2.91 9.48 71.98 0.68 -2.23 16 14 N -0.69 -17.81 4.80 -442.55 -2.12 -19.94 16 15 C 0.53 20.35 7.81 87.66 0.68 21.04 16 16 O -0.57 -26.98 15.52 -3.04 -0.05 -27.02 16 17 C -0.13 -5.32 6.16 71.24 0.44 -4.89 16 18 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 19 C -0.55 -31.88 9.50 67.95 0.65 -31.23 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.72 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 23 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 O -0.20 -4.50 10.78 -3.77 -0.04 -4.54 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.12 1.05 8.11 -2.39 -0.02 1.03 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.34 6.96 8.72 -89.69 -0.78 6.18 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.41 8.50 8.60 -92.71 -0.80 7.70 16 45 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 47 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -82.79 412.62 -1.17 -83.96 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.61 Total: 25.60 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 7.14 Total: -8.02 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -8.49 Total: -106.50 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.09 Total: -31.57 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -82.79 -1.17 -83.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483209375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.504 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds