Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.52999 * 117.50192 * 223.74660 * 7 6 4 9 9 C 1.53001 * 117.50120 * 155.08582 * 7 6 4 10 10 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 11 11 C 1.47483 * 111.00383 * 199.02749 * 10 2 1 12 12 C 1.53520 * 87.93230 * 138.70384 * 11 10 2 13 13 C 1.52993 * 114.16909 * 220.33030 * 12 11 10 14 14 N 1.46501 * 109.47428 * 268.83923 * 13 12 11 15 15 C 1.34776 * 120.00044 * 180.02562 * 14 13 12 16 16 O 1.21277 * 120.00034 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99688 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47223 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00176 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00123 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99643 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00436 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46713 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47351 * 119.99262 * 23 21 19 26 26 H 1.48495 * 109.47130 * 240.00002 * 23 21 19 27 27 C 1.47477 * 111.00072 * 295.00241 * 10 2 1 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 32 32 H 1.09009 * 115.54606 * 9.41837 * 7 6 4 33 33 H 1.08994 * 117.49494 * 0.02562 * 8 7 6 34 34 H 1.09003 * 117.49708 * 145.01883 * 8 7 6 35 35 H 1.09002 * 117.49401 * 214.98088 * 9 7 6 36 36 H 1.09001 * 117.49675 * 359.97369 * 9 7 6 37 37 H 1.09002 * 113.47731 * 253.46913 * 11 10 2 38 38 H 1.09002 * 113.47199 * 23.93853 * 11 10 2 39 39 H 1.08999 * 114.16760 * 87.62207 * 12 11 10 40 40 H 1.08999 * 109.47467 * 28.84356 * 13 12 11 41 41 H 1.09006 * 109.46893 * 148.83893 * 13 12 11 42 42 H 0.96999 * 119.99667 * 0.02562 * 14 13 12 43 43 H 1.08999 * 109.47280 * 300.00235 * 17 15 14 44 44 H 1.09006 * 109.47334 * 59.99927 * 17 15 14 45 45 H 0.97006 * 119.99495 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.47886 * 336.06108 * 27 10 2 47 47 H 1.09004 * 113.47464 * 106.46895 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 2.7343 -0.0785 -4.7938 9 6 1.3829 -0.7829 -4.9382 10 7 2.0197 -0.6925 1.1993 11 6 3.4231 -0.3360 1.4796 12 6 3.0497 -0.2645 2.9670 13 6 3.6975 0.8990 3.7202 14 7 4.9720 0.4602 4.2940 15 6 5.7231 1.3233 5.0062 16 8 5.3437 2.4631 5.1725 17 6 7.0345 0.8720 5.5959 18 16 7.8000 2.2480 6.4885 19 6 9.2719 1.4632 7.0564 20 1 9.4588 0.4271 6.8156 21 6 10.1905 2.1763 7.8141 22 7 9.9624 3.4389 8.1079 23 14 11.7505 1.3442 8.4168 24 1 11.7687 -0.0672 7.9553 25 1 12.9340 2.0582 7.8737 26 1 11.7888 1.3797 9.9008 27 6 1.6473 0.0420 2.4228 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.1487 0.5386 -2.5436 32 1 2.6770 -1.9021 -3.4746 33 1 2.7267 1.0026 -4.6556 34 1 3.5714 -0.4730 -5.3698 35 1 1.3317 -1.6405 -5.6090 36 1 0.4857 -0.1655 -4.8949 37 1 4.1286 -1.1336 1.2468 38 1 3.7190 0.6253 1.0595 39 1 3.1263 -1.2163 3.4925 40 1 3.8744 1.7246 3.0309 41 1 3.0336 1.2290 4.5194 42 1 5.2753 -0.4516 4.1613 43 1 6.8579 0.0459 6.2848 44 1 7.6983 0.5428 4.7964 45 1 10.6046 3.9374 8.6372 46 1 1.4694 1.1041 2.2545 47 1 0.8471 -0.4349 2.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494526654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = -7.960592 kcal Electronic energy + Delta-G solvation = -26172.542023 eV Core-core repulsion = 22290.728433 eV Total energy + Delta-G solvation = -3881.813590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24215 -39.76526 -38.90136 -37.43520 -34.88835 -33.80193 -32.46631 -32.41183 -30.04976 -28.15025 -26.52600 -25.51086 -25.11439 -23.82775 -22.94258 -21.81592 -20.64680 -20.60340 -19.84937 -17.93855 -17.62650 -17.19539 -16.42412 -16.32218 -16.05129 -15.68895 -15.25646 -15.01889 -14.93740 -14.79219 -14.47625 -14.18140 -13.85599 -13.33588 -13.23622 -13.09793 -13.02177 -12.81227 -12.69203 -12.53082 -12.25088 -12.14033 -11.86599 -11.80764 -11.51575 -11.20563 -11.05998 -11.05094 -11.00493 -10.81023 -10.73377 -10.11077 -9.79336 -9.43255 -9.28413 -9.21997 -9.06546 -8.85964 -8.21812 -6.48568 -6.20713 -3.90946 2.16987 2.46740 3.04218 3.11649 3.22707 3.29264 3.34085 3.37279 3.53816 3.68985 4.01780 4.20266 4.21695 4.22916 4.33724 4.41000 4.43571 4.47580 4.55349 4.76425 4.94667 4.97731 5.07165 5.09726 5.14657 5.17014 5.23428 5.26621 5.30335 5.38517 5.42064 5.50467 5.51635 5.58271 5.63950 5.75320 5.85185 5.92034 5.97730 5.99902 6.16903 6.52309 6.63750 7.00006 7.61369 7.72968 7.80736 8.36852 8.62947 9.24944 10.86793 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001641 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.588088 B =17058.767311 C =17876.000944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 H 0.076 0.924 4 C 0.525 3.475 5 O -0.514 6.514 6 N -0.706 5.706 7 C 0.081 3.919 8 C -0.194 4.194 9 C -0.189 4.189 10 N -0.447 5.447 11 C 0.008 3.992 12 C -0.126 4.126 13 C 0.133 3.867 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.154 4.154 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.008 3.992 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.400 0.600 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 -8.442 -23.706 33.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 H 0.094 0.906 4 C 0.310 3.690 5 O -0.387 6.387 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.232 4.232 9 C -0.228 4.228 10 N -0.169 5.169 11 C -0.121 4.121 12 C -0.145 4.145 13 C 0.009 3.991 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.394 6.394 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.121 4.121 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.567 -7.799 -23.364 33.406 hybrid contribution 1.469 -0.907 -0.111 1.730 sum -21.097 -8.706 -23.475 32.741 Atomic orbital electron populations 1.21781 0.91651 1.03717 1.02853 1.22261 0.97914 0.96885 0.91416 0.90603 1.20413 0.80003 0.84676 0.83896 1.90722 1.36365 1.25326 1.86304 1.45390 1.53822 1.31797 1.04769 1.21596 1.02075 0.98465 0.80412 1.23449 0.97676 0.99615 1.02507 1.23389 0.95530 1.03815 1.00030 1.68968 1.05737 1.42887 0.99336 1.23959 0.92326 1.01267 0.94544 1.22998 0.95932 1.00109 0.95504 1.21216 0.85195 0.95496 0.97242 1.45980 1.21916 1.15265 1.56032 1.20311 0.85318 0.85240 0.77354 1.90696 1.71875 1.18841 1.58006 1.23532 0.96375 1.06768 1.03744 1.85377 1.21981 1.11454 1.64692 1.22919 1.06257 1.00072 1.39040 0.90849 1.24994 0.98413 0.94874 0.95326 1.70035 1.35860 1.07986 1.36449 0.86114 0.81562 0.79315 0.78491 1.19604 1.20578 1.20570 1.23845 0.97924 0.98306 0.92014 0.90981 0.90993 0.91697 0.76534 0.84455 0.88451 0.87876 0.87812 0.88470 0.88883 0.91150 0.87021 0.91663 0.91130 0.76647 0.89176 0.89199 0.92262 0.90696 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.07 37.16 0.34 -0.36 16 2 C 0.03 0.20 2.09 -68.87 -0.14 0.05 16 3 H 0.08 0.45 7.56 -51.93 -0.39 0.06 16 4 C 0.52 4.80 7.05 -10.98 -0.08 4.72 16 5 O -0.51 -6.90 15.58 5.56 0.09 -6.82 16 6 N -0.71 -4.42 5.46 -53.80 -0.29 -4.71 16 7 C 0.08 0.52 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.94 10.46 -26.69 -0.28 -1.22 16 9 C -0.19 -0.79 10.46 -26.69 -0.28 -1.07 16 10 N -0.45 -3.96 5.73 -237.96 -1.36 -5.32 16 11 C 0.01 0.07 6.63 -7.54 -0.05 0.02 16 12 C -0.13 -1.05 4.09 -90.09 -0.37 -1.42 16 13 C 0.13 1.46 5.58 -4.04 -0.02 1.44 16 14 N -0.74 -9.69 5.56 -60.30 -0.33 -10.02 16 15 C 0.53 9.90 7.85 -10.99 -0.09 9.82 16 16 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 17 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.01 0.06 6.15 -7.54 -0.05 0.01 16 28 H 0.07 0.30 7.34 -51.93 -0.38 -0.08 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.21 16 31 H 0.40 1.39 8.24 -40.82 -0.34 1.06 16 32 H 0.14 1.12 7.40 -51.92 -0.38 0.74 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.64 7.35 -51.93 -0.38 0.25 16 39 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.77 7.81 -51.93 -0.41 0.36 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.45 7.80 -51.93 -0.40 0.05 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -37.36 405.06 -10.87 -48.23 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.62 Total: 1.02 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.03 Total: -3.87 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -1.26 Total: -45.60 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.36 -10.87 -48.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.267 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds