Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.21282 * 119.99865 * 240.00203 * 4 2 1 6 6 N 1.34774 * 120.00164 * 59.99708 * 4 2 1 7 7 C 1.46496 * 120.00339 * 180.02562 * 6 4 2 8 8 C 1.52999 * 117.50192 * 223.74660 * 7 6 4 9 9 C 1.53001 * 117.50120 * 155.08582 * 7 6 4 10 10 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 11 11 C 1.47483 * 111.00383 * 199.02749 * 10 2 1 12 12 C 1.53520 * 87.93230 * 138.70384 * 11 10 2 13 13 C 1.52993 * 114.16909 * 220.33030 * 12 11 10 14 14 N 1.46501 * 109.47428 * 268.83923 * 13 12 11 15 15 C 1.34776 * 120.00044 * 180.02562 * 14 13 12 16 16 O 1.21277 * 120.00034 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99688 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47223 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00176 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00123 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99643 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00436 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46713 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47351 * 119.99262 * 23 21 19 26 26 H 1.48495 * 109.47130 * 240.00002 * 23 21 19 27 27 C 1.47477 * 111.00072 * 295.00241 * 10 2 1 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97005 * 119.99795 * 359.97438 * 6 4 2 32 32 H 1.09009 * 115.54606 * 9.41837 * 7 6 4 33 33 H 1.08994 * 117.49494 * 0.02562 * 8 7 6 34 34 H 1.09003 * 117.49708 * 145.01883 * 8 7 6 35 35 H 1.09002 * 117.49401 * 214.98088 * 9 7 6 36 36 H 1.09001 * 117.49675 * 359.97369 * 9 7 6 37 37 H 1.09002 * 113.47731 * 253.46913 * 11 10 2 38 38 H 1.09002 * 113.47199 * 23.93853 * 11 10 2 39 39 H 1.08999 * 114.16760 * 87.62207 * 12 11 10 40 40 H 1.08999 * 109.47467 * 28.84356 * 13 12 11 41 41 H 1.09006 * 109.46893 * 148.83893 * 13 12 11 42 42 H 0.96999 * 119.99667 * 0.02562 * 14 13 12 43 43 H 1.08999 * 109.47280 * 300.00235 * 17 15 14 44 44 H 1.09006 * 109.47334 * 59.99927 * 17 15 14 45 45 H 0.97006 * 119.99495 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.47886 * 336.06108 * 27 10 2 47 47 H 1.09004 * 113.47464 * 106.46895 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1946 -0.9406 -3.6508 8 6 2.7343 -0.0785 -4.7938 9 6 1.3829 -0.7829 -4.9382 10 7 2.0197 -0.6925 1.1993 11 6 3.4231 -0.3360 1.4796 12 6 3.0497 -0.2645 2.9670 13 6 3.6975 0.8990 3.7202 14 7 4.9720 0.4602 4.2940 15 6 5.7231 1.3233 5.0062 16 8 5.3437 2.4631 5.1725 17 6 7.0345 0.8720 5.5959 18 16 7.8000 2.2480 6.4885 19 6 9.2719 1.4632 7.0564 20 1 9.4588 0.4271 6.8156 21 6 10.1905 2.1763 7.8141 22 7 9.9624 3.4389 8.1079 23 14 11.7505 1.3442 8.4168 24 1 11.7687 -0.0672 7.9553 25 1 12.9340 2.0582 7.8737 26 1 11.7888 1.3797 9.9008 27 6 1.6473 0.0420 2.4228 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.1487 0.5386 -2.5436 32 1 2.6770 -1.9021 -3.4746 33 1 2.7267 1.0026 -4.6556 34 1 3.5714 -0.4730 -5.3698 35 1 1.3317 -1.6405 -5.6090 36 1 0.4857 -0.1655 -4.8949 37 1 4.1286 -1.1336 1.2468 38 1 3.7190 0.6253 1.0595 39 1 3.1263 -1.2163 3.4925 40 1 3.8744 1.7246 3.0309 41 1 3.0336 1.2290 4.5194 42 1 5.2753 -0.4516 4.1613 43 1 6.8579 0.0459 6.2848 44 1 7.6983 0.5428 4.7964 45 1 10.6046 3.9374 8.6372 46 1 1.4694 1.1041 2.2545 47 1 0.8471 -0.4349 2.9889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494526654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = -37.817871 kcal Electronic energy + Delta-G solvation = -26173.836732 eV Core-core repulsion = 22290.728433 eV Total energy + Delta-G solvation = -3883.108299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91247 -40.65747 -40.08683 -37.98621 -35.97174 -34.59453 -34.55301 -33.12027 -31.36636 -29.14314 -27.67587 -27.17113 -25.82704 -24.54519 -23.29842 -22.36990 -21.87414 -21.24039 -20.75486 -19.78431 -18.36100 -17.93475 -17.63192 -17.31992 -16.88029 -16.87591 -16.70624 -16.12041 -16.03957 -15.74989 -15.45744 -15.15088 -14.97989 -14.62659 -14.36765 -14.15407 -13.79180 -13.62701 -13.39587 -13.25974 -13.21237 -13.15670 -12.90995 -12.79730 -12.61039 -12.52088 -12.37094 -12.22170 -11.87602 -11.69800 -11.55533 -11.48973 -11.15707 -10.93320 -10.79975 -10.27339 -10.11564 -9.89461 -9.76184 -8.66126 -8.34887 -6.12571 1.27638 1.41350 1.47349 1.51959 1.58798 1.62555 1.93794 2.26021 2.31135 2.91973 2.96278 2.99362 3.29396 3.37471 3.57836 3.70420 3.79423 3.92482 3.96248 4.01640 4.04106 4.07197 4.20938 4.22491 4.30723 4.38519 4.52504 4.53955 4.70520 4.73501 4.74133 4.76275 4.82354 4.84355 4.87014 5.00025 5.10501 5.17959 5.19115 5.30075 5.42437 5.47753 5.48111 5.92983 6.20234 6.49135 6.51388 7.06759 7.21202 7.25119 8.74604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.001641 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.588088 B =17058.767311 C =17876.000944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.028 3.972 3 H 0.092 0.908 4 C 0.519 3.481 5 O -0.567 6.567 6 N -0.691 5.691 7 C 0.052 3.948 8 C -0.189 4.189 9 C -0.169 4.169 10 N -0.466 5.466 11 C 0.007 3.993 12 C -0.114 4.114 13 C 0.135 3.865 14 N -0.712 5.712 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.150 6.150 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.017 3.983 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.416 0.584 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.090 0.910 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.368 -9.348 -24.795 35.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 H 0.110 0.890 4 C 0.305 3.695 5 O -0.445 6.445 6 N -0.343 5.343 7 C -0.054 4.054 8 C -0.227 4.227 9 C -0.207 4.207 10 N -0.189 5.189 11 C -0.122 4.122 12 C -0.133 4.133 13 C 0.011 3.989 14 N -0.366 5.366 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.077 5.923 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.112 4.112 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.253 0.747 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.707 -8.726 -24.510 35.198 hybrid contribution 1.698 -0.676 0.081 1.830 sum -22.009 -9.402 -24.429 34.199 Atomic orbital electron populations 1.21791 0.89717 1.03292 1.04654 1.22350 0.99317 0.96965 0.89771 0.89002 1.20876 0.79298 0.84142 0.85151 1.90696 1.38947 1.27763 1.87086 1.45267 1.53124 1.31843 1.04039 1.21580 1.04316 0.98247 0.81258 1.23500 0.98339 0.99830 1.01069 1.23464 0.95671 1.03861 0.97712 1.68934 1.05331 1.44023 1.00623 1.23898 0.92606 1.00543 0.95136 1.22881 0.96734 0.99180 0.94480 1.21348 0.83871 0.96510 0.97174 1.45769 1.21839 1.15174 1.53835 1.20021 0.85129 0.85099 0.77785 1.90684 1.72796 1.20837 1.60140 1.23386 0.97166 1.03916 1.03780 1.85525 1.23408 1.16793 1.66563 1.23249 1.06520 1.00455 1.39263 0.89994 1.26115 1.02238 0.95478 0.95258 1.70191 1.37393 1.09810 1.37335 0.84908 0.76484 0.78610 0.77959 1.18155 1.19908 1.19852 1.23867 0.97112 0.99181 0.90997 0.89756 0.92475 0.89365 0.74707 0.87030 0.87643 0.87792 0.87155 0.86840 0.90876 0.91094 0.86451 0.92112 0.91202 0.74759 0.87221 0.87408 0.91980 0.89221 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.07 71.98 0.65 -0.37 16 2 C 0.03 0.36 2.09 44.17 0.09 0.45 16 3 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 4 C 0.52 9.34 7.05 87.66 0.62 9.96 16 5 O -0.57 -15.88 15.58 -3.04 -0.05 -15.92 16 6 N -0.69 -7.98 5.46 -442.53 -2.42 -10.40 16 7 C 0.05 0.65 6.43 44.99 0.29 0.94 16 8 C -0.19 -1.60 10.46 30.62 0.32 -1.28 16 9 C -0.17 -1.12 10.46 30.62 0.32 -0.80 16 10 N -0.47 -7.70 5.73 -906.77 -5.19 -12.90 16 11 C 0.01 0.13 6.63 83.58 0.55 0.68 16 12 C -0.11 -1.70 4.09 -10.45 -0.04 -1.74 16 13 C 0.13 2.75 5.58 86.38 0.48 3.24 16 14 N -0.71 -17.63 5.56 -463.07 -2.57 -20.21 16 15 C 0.53 19.58 7.85 87.66 0.69 20.27 16 16 O -0.57 -25.97 15.86 -3.02 -0.05 -26.02 16 17 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 18 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 19 C -0.55 -31.52 9.50 67.95 0.65 -30.87 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 23 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C 0.02 0.20 6.15 83.58 0.51 0.72 16 28 H 0.08 0.45 7.34 -2.39 -0.02 0.43 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.23 7.56 -2.38 -0.02 0.22 16 31 H 0.42 2.01 8.24 -92.70 -0.76 1.24 16 32 H 0.11 1.99 7.40 -2.38 -0.02 1.98 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.22 7.35 -2.39 -0.02 1.21 16 39 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.35 7.81 -2.39 -0.02 1.33 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.42 7.80 8.47 -92.71 -0.79 7.02 16 43 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 44 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 46 H 0.09 0.82 7.80 -2.39 -0.02 0.80 16 47 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -84.59 405.06 -3.65 -88.24 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.56 Total: 18.97 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 6.04 Total: -2.34 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -9.89 Total: -99.36 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.10 Total: -41.94 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -84.59 -3.65 -88.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494526654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.422 kcal (2) G-P(sol) polarization free energy of solvation -84.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds