Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46818 * 35.00369 * 7 6 5 9 9 C 1.52993 * 109.47308 * 275.00154 * 7 6 5 10 10 C 1.50695 * 109.46760 * 155.00092 * 7 6 5 11 11 N 1.30259 * 125.62166 * 44.69943 * 10 7 6 12 12 C 1.34484 * 108.69830 * 179.83500 * 11 10 7 13 13 C 1.34325 * 107.67124 * 0.42440 * 12 11 10 14 14 C 1.50697 * 126.44381 * 179.77134 * 13 12 11 15 15 O 1.33975 * 125.62140 * 225.00077 * 10 7 6 16 16 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 17 17 O 1.21286 * 119.99764 * 179.97438 * 16 3 2 18 18 C 1.50697 * 120.00258 * 0.02562 * 16 3 2 19 19 S 1.81001 * 109.47081 * 180.02562 * 18 16 3 20 20 C 1.76207 * 99.99686 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99614 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99805 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46647 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46933 * 119.99437 * 24 22 20 27 27 H 1.48495 * 109.46751 * 239.99868 * 24 22 20 28 28 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 29 29 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 32 32 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 33 33 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 34 34 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 37 37 H 1.00908 * 110.99847 * 56.04959 * 6 5 4 38 38 H 1.09001 * 109.46997 * 59.99957 * 9 7 6 39 39 H 1.08999 * 109.47404 * 180.02562 * 9 7 6 40 40 H 1.09004 * 109.47538 * 300.00000 * 9 7 6 41 41 H 1.07998 * 126.15793 * 180.16519 * 12 11 10 42 42 H 1.09004 * 109.46672 * 269.97106 * 14 13 12 43 43 H 1.08997 * 109.47079 * 29.96783 * 14 13 12 44 44 H 1.08999 * 109.47385 * 149.97091 * 14 13 12 45 45 H 1.09002 * 109.46816 * 299.99717 * 18 16 3 46 46 H 1.08991 * 109.47311 * 59.99425 * 18 16 3 47 47 H 0.97005 * 120.00318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9526 2.5242 2.9823 7 6 5.3333 2.3148 3.4385 8 1 5.9984 2.2727 2.5760 9 6 5.4200 0.9989 4.2141 10 6 5.7444 3.4543 4.3348 11 7 5.0212 3.9683 5.2885 12 6 5.7176 4.9609 5.8704 13 6 6.8994 5.0545 5.2388 14 6 8.0040 6.0322 5.5468 15 8 6.9117 4.1094 4.2784 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9912 1.3065 -2.4723 19 16 2.3841 2.4152 -3.8480 20 6 2.0105 1.3592 -5.2082 21 1 1.6553 0.3549 -5.0305 22 6 2.1738 1.8179 -6.5080 23 7 2.6072 3.0417 -6.7246 24 14 1.7771 0.6986 -7.9501 25 1 1.3107 -0.6166 -7.4421 26 1 0.7101 1.3168 -8.7775 27 1 2.9955 0.5058 -8.7767 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6876 2.0284 34 1 2.0955 3.1409 1.1385 35 1 4.3884 2.2155 0.9507 36 1 3.8746 0.7621 1.8407 37 1 3.2913 2.2323 3.6864 38 1 5.1226 0.1747 3.5658 39 1 6.4443 0.8437 4.5530 40 1 4.7548 1.0409 5.0767 41 1 5.3846 5.5750 6.6940 42 1 7.8627 6.9377 4.9568 43 1 7.9823 6.2825 6.6074 44 1 8.9660 5.5835 5.2990 45 1 2.6210 0.4188 -2.5303 46 1 0.9432 1.0127 -2.5298 47 1 2.7209 3.3624 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497352378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = -14.258367 kcal Electronic energy + Delta-G solvation = -26652.651138 eV Core-core repulsion = 22770.564456 eV Total energy + Delta-G solvation = -3882.086682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.50427 -39.64673 -37.62993 -35.78368 -34.81755 -33.14095 -32.42510 -31.92510 -30.15400 -29.48645 -27.19370 -26.73586 -25.45639 -23.98756 -23.39173 -22.65769 -21.85517 -20.90977 -19.00663 -17.66654 -17.48513 -16.92050 -16.76112 -16.25122 -15.82760 -15.17807 -15.00736 -14.87312 -14.80014 -14.32562 -13.93422 -13.82680 -13.77110 -13.56400 -13.43413 -13.29709 -13.10142 -12.94918 -12.69383 -12.59717 -12.41233 -12.11953 -11.90159 -11.78626 -11.72355 -11.44501 -11.17428 -11.12697 -11.05691 -11.00578 -10.74567 -10.66022 -9.79013 -9.34529 -9.06980 -8.92585 -8.80209 -8.54519 -8.20627 -6.49130 -6.21167 -3.91553 1.22537 2.28031 2.52246 2.91601 3.06846 3.21519 3.25426 3.30850 3.57535 3.80136 4.04537 4.20639 4.46747 4.56114 4.63501 4.73184 4.77735 4.89189 4.95681 5.01370 5.03373 5.03810 5.12893 5.13789 5.22406 5.26815 5.27252 5.33662 5.39468 5.54917 5.59099 5.67417 5.68846 5.76536 5.83389 5.83951 5.92698 6.00127 6.06592 6.12050 6.23119 6.51770 6.72152 7.05151 7.55061 7.58103 7.60405 8.35830 8.58534 9.24166 10.86256 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002024 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.131714 B =13829.828796 C =15015.552824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.620 5.620 4 C 0.121 3.879 5 C 0.047 3.953 6 N -0.671 5.671 7 C 0.185 3.815 8 H 0.106 0.894 9 C -0.176 4.176 10 C 0.205 3.795 11 N -0.468 5.468 12 C -0.044 4.044 13 C -0.054 4.054 14 C -0.067 4.067 15 O -0.201 6.201 16 C 0.533 3.467 17 O -0.510 6.510 18 C -0.150 4.150 19 S -0.063 6.063 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.352 0.648 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.181 0.819 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -4.445 26.716 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.002 4.002 5 C -0.083 4.083 6 N -0.304 5.304 7 C 0.073 3.927 8 H 0.124 0.876 9 C -0.235 4.235 10 C -0.003 4.003 11 N -0.196 5.196 12 C -0.183 4.183 13 C -0.107 4.107 14 C -0.124 4.124 15 O -0.088 6.088 16 C 0.320 3.680 17 O -0.384 6.384 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.198 0.802 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.700 -2.215 26.386 27.086 hybrid contribution -0.152 -2.643 -0.708 2.740 sum 5.548 -4.858 25.679 26.717 Atomic orbital electron populations 1.22223 0.95929 1.02156 1.02813 1.21535 0.94529 0.82520 1.03074 1.47959 1.67737 1.14434 1.05498 1.21204 0.94243 0.99844 0.84942 1.22423 0.99010 0.95932 0.90947 1.59967 1.02015 1.62287 1.06107 1.19602 0.92209 0.86381 0.94497 0.87574 1.22470 1.03617 0.96169 1.01288 1.26059 0.80206 0.97055 0.96943 1.70346 1.31070 1.09839 1.08351 1.23080 0.91781 0.99834 1.03597 1.23453 1.00442 0.94543 0.92234 1.20259 0.94133 0.95138 1.02890 1.84375 1.38488 1.38636 1.47323 1.20362 0.76477 0.86521 0.84597 1.90718 1.43561 1.17378 1.86734 1.23577 1.04751 1.04446 0.97270 1.85427 1.86770 1.18004 0.93387 1.22896 1.51624 1.01494 0.92203 0.90912 1.24995 0.94705 0.95543 0.98389 1.70028 1.43018 1.15644 1.21543 0.86125 0.78171 0.80084 0.81164 1.19619 1.20571 1.20587 0.92478 0.91843 0.91632 0.89939 0.90814 0.90967 0.88834 0.89904 0.94656 0.82807 0.90809 0.91409 0.91131 0.80183 0.89719 0.89081 0.90426 0.89373 0.89240 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.09 5.93 -4.04 -0.02 1.06 16 3 N -0.62 -8.42 2.47 -173.69 -0.43 -8.85 16 4 C 0.12 1.44 5.67 -4.04 -0.02 1.41 16 5 C 0.05 0.50 5.81 -3.83 -0.02 0.48 16 6 N -0.67 -6.89 6.22 -107.96 -0.67 -7.56 16 7 C 0.18 1.78 3.13 -68.87 -0.22 1.56 16 8 H 0.11 1.02 7.80 -51.93 -0.40 0.61 16 9 C -0.18 -1.24 9.14 37.15 0.34 -0.90 16 10 C 0.21 2.42 7.19 -12.95 -0.09 2.33 16 11 N -0.47 -5.76 11.27 -11.10 -0.13 -5.89 16 12 C -0.04 -0.45 11.80 -17.77 -0.21 -0.66 16 13 C -0.05 -0.52 7.39 -35.69 -0.26 -0.79 16 14 C -0.07 -0.37 10.43 36.00 0.38 0.01 16 15 O -0.20 -2.41 10.78 5.36 0.06 -2.36 16 16 C 0.53 10.03 7.69 -10.99 -0.08 9.94 16 17 O -0.51 -11.70 15.44 5.55 0.09 -11.61 16 18 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.74 7.22 -51.93 -0.37 0.37 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 32 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.09 1.38 7.42 -51.93 -0.39 0.99 16 35 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.04 0.31 7.44 -51.93 -0.39 -0.07 16 37 H 0.35 3.15 8.47 -39.29 -0.33 2.82 16 38 H 0.07 0.44 7.45 -51.93 -0.39 0.05 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.64 7.40 -51.91 -0.38 1.26 16 46 H 0.09 1.69 7.18 -51.92 -0.37 1.31 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -36.38 407.15 -8.47 -44.85 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.55 Total: 0.92 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.53 Total: -2.60 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.49 Total: -47.78 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.14 Total: -13.97 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.38 -8.47 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.591 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds