Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.46818 * 35.00369 * 7 6 5 9 9 C 1.52993 * 109.47308 * 275.00154 * 7 6 5 10 10 C 1.50695 * 109.46760 * 155.00092 * 7 6 5 11 11 N 1.30259 * 125.62166 * 44.69943 * 10 7 6 12 12 C 1.34484 * 108.69830 * 179.83500 * 11 10 7 13 13 C 1.34325 * 107.67124 * 0.42440 * 12 11 10 14 14 C 1.50697 * 126.44381 * 179.77134 * 13 12 11 15 15 O 1.33975 * 125.62140 * 225.00077 * 10 7 6 16 16 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 17 17 O 1.21286 * 119.99764 * 179.97438 * 16 3 2 18 18 C 1.50697 * 120.00258 * 0.02562 * 16 3 2 19 19 S 1.81001 * 109.47081 * 180.02562 * 18 16 3 20 20 C 1.76207 * 99.99686 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99614 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00215 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99805 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46647 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46933 * 119.99437 * 24 22 20 27 27 H 1.48495 * 109.46751 * 239.99868 * 24 22 20 28 28 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 29 29 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 32 32 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 33 33 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 34 34 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 37 37 H 1.00908 * 110.99847 * 56.04959 * 6 5 4 38 38 H 1.09001 * 109.46997 * 59.99957 * 9 7 6 39 39 H 1.08999 * 109.47404 * 180.02562 * 9 7 6 40 40 H 1.09004 * 109.47538 * 300.00000 * 9 7 6 41 41 H 1.07998 * 126.15793 * 180.16519 * 12 11 10 42 42 H 1.09004 * 109.46672 * 269.97106 * 14 13 12 43 43 H 1.08997 * 109.47079 * 29.96783 * 14 13 12 44 44 H 1.08999 * 109.47385 * 149.97091 * 14 13 12 45 45 H 1.09002 * 109.46816 * 299.99717 * 18 16 3 46 46 H 1.08991 * 109.47311 * 59.99425 * 18 16 3 47 47 H 0.97005 * 120.00318 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9526 2.5242 2.9823 7 6 5.3333 2.3148 3.4385 8 1 5.9984 2.2727 2.5760 9 6 5.4200 0.9989 4.2141 10 6 5.7444 3.4543 4.3348 11 7 5.0212 3.9683 5.2885 12 6 5.7176 4.9609 5.8704 13 6 6.8994 5.0545 5.2388 14 6 8.0040 6.0322 5.5468 15 8 6.9117 4.1094 4.2784 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9912 1.3065 -2.4723 19 16 2.3841 2.4152 -3.8480 20 6 2.0105 1.3592 -5.2082 21 1 1.6553 0.3549 -5.0305 22 6 2.1738 1.8179 -6.5080 23 7 2.6072 3.0417 -6.7246 24 14 1.7771 0.6986 -7.9501 25 1 1.3107 -0.6166 -7.4421 26 1 0.7101 1.3168 -8.7775 27 1 2.9955 0.5058 -8.7767 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6876 2.0284 34 1 2.0955 3.1409 1.1385 35 1 4.3884 2.2155 0.9507 36 1 3.8746 0.7621 1.8407 37 1 3.2913 2.2323 3.6864 38 1 5.1226 0.1747 3.5658 39 1 6.4443 0.8437 4.5530 40 1 4.7548 1.0409 5.0767 41 1 5.3846 5.5750 6.6940 42 1 7.8627 6.9377 4.9568 43 1 7.9823 6.2825 6.6074 44 1 8.9660 5.5835 5.2990 45 1 2.6210 0.4188 -2.5303 46 1 0.9432 1.0127 -2.5298 47 1 2.7209 3.3624 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497352378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -41.841542 kcal Electronic energy + Delta-G solvation = -26653.847234 eV Core-core repulsion = 22770.564456 eV Total energy + Delta-G solvation = -3883.282779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.30568 -40.97268 -38.50657 -36.99873 -35.65571 -34.58672 -33.91426 -32.67020 -31.14516 -30.80184 -28.02435 -27.72467 -27.45448 -24.74790 -24.30532 -23.65840 -22.63808 -21.72224 -20.45824 -19.44009 -18.31865 -18.11606 -17.73693 -17.41690 -16.88510 -16.78393 -16.21571 -16.15521 -15.77095 -15.57891 -15.10992 -14.81603 -14.68847 -14.51278 -14.37903 -14.17771 -14.05236 -13.98902 -13.67818 -13.39954 -13.23516 -13.17327 -13.09115 -12.93318 -12.86929 -12.68206 -12.59572 -12.45458 -12.30335 -12.08381 -11.97077 -11.68754 -11.49254 -11.15869 -10.87131 -10.25338 -9.79814 -9.67987 -9.47514 -8.67324 -8.34625 -6.13006 0.44360 1.25523 1.41349 1.44594 1.52915 1.57884 1.62852 1.73084 2.10075 2.27459 2.99482 3.08324 3.19732 3.29098 3.68769 3.78614 3.90224 3.99763 4.06940 4.08078 4.11188 4.15640 4.21940 4.40497 4.42013 4.45586 4.48883 4.54484 4.61545 4.65393 4.69239 4.76387 4.84986 4.91536 4.97987 5.02869 5.04406 5.13224 5.19165 5.37475 5.39103 5.41960 5.59156 5.79929 6.19978 6.28553 6.35674 6.76965 7.06522 7.17436 8.74871 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.002024 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.131714 B =13829.828796 C =15015.552824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.122 3.878 5 C 0.060 3.940 6 N -0.682 5.682 7 C 0.185 3.815 8 H 0.100 0.900 9 C -0.165 4.165 10 C 0.187 3.813 11 N -0.488 5.488 12 C -0.064 4.064 13 C -0.058 4.058 14 C -0.066 4.066 15 O -0.221 6.221 16 C 0.530 3.470 17 O -0.564 6.564 18 C -0.122 4.122 19 S -0.157 6.157 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.361 0.639 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.206 0.794 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -7.259 28.328 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.337 5.337 4 C -0.001 4.001 5 C -0.070 4.070 6 N -0.317 5.317 7 C 0.073 3.927 8 H 0.118 0.882 9 C -0.224 4.224 10 C -0.021 4.021 11 N -0.217 5.217 12 C -0.201 4.201 13 C -0.111 4.111 14 C -0.123 4.123 15 O -0.108 6.108 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.273 4.273 19 S 0.070 5.930 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.222 0.778 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.168 -5.075 28.056 28.976 hybrid contribution 0.001 -1.748 -1.027 2.027 sum 5.169 -6.822 27.029 28.352 Atomic orbital electron populations 1.22199 0.95202 1.03497 1.01896 1.21910 0.95077 0.80245 1.05092 1.47929 1.65763 1.15626 1.04371 1.21321 0.96068 0.98035 0.84686 1.22183 0.97140 0.97364 0.90272 1.59831 1.02749 1.62934 1.06178 1.19700 0.91501 0.87079 0.94422 0.88202 1.22383 1.03898 0.94911 1.01174 1.26518 0.80341 0.97767 0.97489 1.70311 1.31769 1.10729 1.08903 1.23580 0.92046 1.00005 1.04514 1.24283 1.01456 0.94164 0.91151 1.20480 0.92899 0.94188 1.04692 1.84380 1.38839 1.39363 1.48209 1.20171 0.76480 0.85900 0.85642 1.90702 1.46398 1.19592 1.87490 1.23387 1.05871 1.03006 0.95009 1.85634 1.87568 1.22285 0.97480 1.23217 1.51566 1.01723 0.92557 0.89852 1.26155 0.94206 0.97189 1.01756 1.70197 1.44325 1.17933 1.22392 0.84894 0.78071 0.78208 0.76704 1.17838 1.19998 1.19935 0.91687 0.94493 0.89162 0.90040 0.86745 0.86979 0.92306 0.93411 0.91655 0.81772 0.89134 0.91129 0.91100 0.77757 0.88999 0.86437 0.89840 0.87398 0.87679 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 71.98 0.74 -1.99 16 2 C 0.10 1.66 5.93 86.38 0.51 2.17 16 3 N -0.60 -15.49 2.47 -821.82 -2.03 -17.53 16 4 C 0.12 2.73 5.67 86.38 0.49 3.22 16 5 C 0.06 1.22 5.81 86.30 0.50 1.72 16 6 N -0.68 -13.55 6.22 -495.47 -3.08 -16.63 16 7 C 0.18 3.48 3.13 44.16 0.14 3.62 16 8 H 0.10 1.96 7.80 -2.39 -0.02 1.94 16 9 C -0.16 -2.04 9.14 71.98 0.66 -1.38 16 10 C 0.19 4.44 7.19 88.34 0.64 5.08 16 11 N -0.49 -11.97 11.27 -303.82 -3.43 -15.40 16 12 C -0.06 -1.27 11.80 83.39 0.98 -0.29 16 13 C -0.06 -1.11 7.39 24.79 0.18 -0.92 16 14 C -0.07 -0.63 10.43 71.23 0.74 0.12 16 15 O -0.22 -5.37 10.78 -3.75 -0.04 -5.41 16 16 C 0.53 20.22 7.69 87.66 0.67 20.89 16 17 O -0.56 -27.17 15.44 -3.05 -0.05 -27.22 16 18 C -0.12 -4.92 4.71 71.23 0.34 -4.59 16 19 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 20 C -0.54 -31.18 9.50 67.95 0.65 -30.54 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.66 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 24 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 25 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.79 7.22 -2.39 -0.02 0.78 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.44 6.44 -2.39 -0.02 1.43 16 32 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 33 H 0.11 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.06 1.77 7.42 -2.39 -0.02 1.76 16 35 H 0.05 1.33 8.06 -2.39 -0.02 1.31 16 36 H 0.07 0.94 7.44 -2.39 -0.02 0.93 16 37 H 0.36 5.89 8.47 -89.69 -0.76 5.13 16 38 H 0.09 0.81 7.45 -2.39 -0.02 0.79 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 41 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 46 H 0.11 3.90 7.18 -2.40 -0.02 3.89 16 47 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -84.50 407.15 0.44 -84.06 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.21 Total: 20.46 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 7.70 Total: -1.76 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -8.25 Total: -105.85 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.09 Total: -32.63 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -84.50 0.44 -84.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497352378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.223 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds