Wall clock time and date at job start Sat Apr 11 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47441 * 110.99971 * 2 1 4 4 C 1.54318 * 107.22969 * 123.26198 * 3 2 1 5 5 C 1.55135 * 103.02184 * 22.28524 * 4 3 2 6 6 C 1.47835 * 111.00076 * 120.84671 * 2 1 3 7 7 H 1.08996 * 110.37963 * 332.57680 * 6 2 1 8 8 C 1.50702 * 110.37342 * 94.80777 * 6 2 1 9 9 O 1.21285 * 120.00308 * 18.54085 * 8 6 2 10 10 N 1.34781 * 119.99823 * 198.54626 * 8 6 2 11 11 C 1.46501 * 119.99784 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31007 * 120.00400 * 127.00487 * 12 11 10 14 14 C 1.50695 * 119.99666 * 7.56139 * 13 12 11 15 15 N 1.46496 * 109.47317 * 127.15371 * 14 13 12 16 16 C 1.34774 * 119.99956 * 179.97438 * 15 14 13 17 17 O 1.21278 * 120.00567 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99879 * 180.02562 * 16 15 14 19 19 S 1.81006 * 109.47134 * 179.97438 * 18 16 15 20 20 C 1.76193 * 99.99757 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00854 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99748 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47330 * 89.99523 * 24 22 20 26 26 H 1.48503 * 109.46834 * 210.00062 * 24 22 20 27 27 H 1.48508 * 109.46977 * 329.99661 * 24 22 20 28 28 H 1.09007 * 109.46589 * 299.15421 * 1 2 3 29 29 H 1.09004 * 109.47352 * 59.14822 * 1 2 3 30 30 H 1.08994 * 109.47315 * 179.15563 * 1 2 3 31 31 H 1.08994 * 109.89222 * 242.66826 * 3 2 1 32 32 H 1.09001 * 109.88965 * 3.85953 * 3 2 1 33 33 H 1.09004 * 110.70749 * 140.67263 * 4 3 2 34 34 H 1.09003 * 110.70485 * 263.72698 * 4 3 2 35 35 H 1.09001 * 110.99292 * 206.26066 * 5 4 3 36 36 H 1.08994 * 110.99458 * 82.43834 * 5 4 3 37 37 H 0.97002 * 120.00032 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47220 * 60.00054 * 11 10 8 39 39 H 1.09003 * 109.47050 * 299.99670 * 11 10 8 40 40 H 1.08000 * 120.00209 * 307.00157 * 12 11 10 41 41 H 1.07997 * 120.00128 * 187.56039 * 13 12 11 42 42 H 1.09007 * 109.47194 * 247.15625 * 14 13 12 43 43 H 1.09002 * 109.47221 * 7.15049 * 14 13 12 44 44 H 0.96999 * 120.00171 * 0.02562 * 15 14 13 45 45 H 1.08994 * 109.47317 * 299.99975 * 18 16 15 46 46 H 1.09008 * 109.47144 * 60.00015 * 18 16 15 47 47 H 0.97001 * 120.00140 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5135 1.2325 5 6 3.3048 0.0443 1.5437 6 6 1.9988 -0.7077 1.1849 7 1 1.2882 -0.6520 2.0095 8 6 2.2974 -2.1457 0.8472 9 8 2.4208 -2.4836 -0.3111 10 7 2.4271 -3.0563 1.8323 11 6 2.7168 -4.4544 1.5039 12 6 2.8113 -5.2595 2.7742 13 6 2.0923 -6.3454 2.9166 14 6 1.3023 -6.8839 1.7518 15 7 1.6338 -8.2963 1.5482 16 6 1.0435 -8.9906 0.5553 17 8 0.2374 -8.4465 -0.1693 18 6 1.3841 -10.4437 0.3462 19 16 0.4341 -11.0909 -1.0520 20 6 1.0109 -12.7557 -1.0694 21 1 1.7404 -13.0821 -0.3430 22 6 0.5285 -13.6475 -2.0173 23 7 -0.3603 -13.2496 -2.9030 24 14 1.1395 -15.4127 -2.0353 25 1 0.2681 -16.2470 -1.1693 26 1 1.1024 -15.9351 -3.4249 27 1 2.5337 -15.4591 -1.5260 28 1 -0.3633 0.5007 0.8976 29 1 -0.3634 0.5270 -0.8823 30 1 -0.3633 -1.0275 -0.0151 31 1 2.5696 1.5541 -0.9105 32 1 1.1755 2.0892 0.0690 33 1 3.8001 2.1033 0.9905 34 1 2.3753 1.9573 2.0685 35 1 3.5496 -0.0798 2.5986 36 1 4.1302 -0.2834 0.9118 37 1 2.3287 -2.7860 2.7587 38 1 3.6626 -4.5126 0.9652 39 1 1.9178 -4.8540 0.8795 40 1 3.4717 -4.9415 3.5674 41 1 2.0659 -6.8546 3.8686 42 1 0.2366 -6.7872 1.9598 43 1 1.5497 -6.3193 0.8528 44 1 2.2776 -8.7319 2.1283 45 1 2.4495 -10.5409 0.1380 46 1 1.1366 -11.0080 1.2454 47 1 -0.6977 -13.8729 -3.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501697425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:49 Heat of formation + Delta-G solvation = -41.983901 kcal Electronic energy + Delta-G solvation = -25898.767572 eV Core-core repulsion = 22015.478620 eV Total energy + Delta-G solvation = -3883.288952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52171 -39.25273 -38.47176 -36.73585 -34.62818 -32.93283 -32.49913 -32.40550 -30.24636 -29.44661 -26.93264 -26.09316 -25.54280 -25.05064 -22.63020 -21.59495 -20.47445 -20.42568 -19.24838 -17.88328 -17.51830 -17.10789 -16.42946 -16.18009 -15.78379 -15.66008 -15.40006 -14.95821 -14.78348 -14.53604 -14.35624 -14.01398 -13.89221 -13.80513 -13.60804 -13.15738 -13.07859 -13.01431 -12.60395 -12.55114 -12.47454 -11.99016 -11.81893 -11.75772 -11.68942 -11.27726 -11.17340 -11.04595 -11.00346 -10.74673 -10.17154 -9.82053 -9.78242 -9.37839 -9.27336 -9.04738 -8.78139 -8.73476 -8.20985 -6.47627 -6.19403 -3.89964 1.47688 2.40741 2.82846 3.11016 3.11844 3.24011 3.30253 3.36039 3.64561 3.81280 4.02308 4.13085 4.22370 4.31162 4.38682 4.54342 4.59619 4.66167 4.88425 4.90677 4.93178 5.03109 5.15553 5.16199 5.19387 5.24280 5.27034 5.30578 5.45298 5.49485 5.54000 5.56075 5.56871 5.68449 5.77888 5.90909 6.04412 6.13232 6.15623 6.30793 6.39213 6.55938 6.61320 7.23564 7.61549 7.70976 8.04736 8.37261 8.62189 9.25731 10.88015 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.001561 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.163370 B =17930.367201 C =18641.618557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.513 5.513 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.055 3.945 7 H 0.076 0.924 8 C 0.517 3.483 9 O -0.508 6.508 10 N -0.730 5.730 11 C 0.134 3.866 12 C -0.162 4.162 13 C -0.142 4.142 14 C 0.134 3.866 15 N -0.735 5.735 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 29.376 17.664 35.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.237 5.237 3 C -0.085 4.085 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.058 4.058 7 H 0.094 0.906 8 C 0.301 3.699 9 O -0.381 6.381 10 N -0.384 5.384 11 C 0.012 3.988 12 C -0.182 4.182 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.390 5.390 16 C 0.317 3.683 17 O -0.390 6.390 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.233 0.767 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.769 29.743 14.918 33.956 hybrid contribution 1.264 -1.502 2.446 3.136 sum 8.033 28.241 17.364 34.111 Atomic orbital electron populations 1.22584 0.86745 1.02669 1.00738 1.63054 1.08288 1.13768 1.38572 1.22877 0.98098 0.88649 0.98838 1.22794 1.00367 0.96548 0.98218 1.22658 0.96176 0.94512 1.02110 1.22515 0.98011 0.92311 0.92918 0.90615 1.20394 0.77171 0.86764 0.85573 1.90753 1.47563 1.80357 1.19393 1.45954 1.74235 1.08531 1.09667 1.20554 1.02747 0.80041 0.95477 1.22855 0.99159 0.97596 0.98567 1.23027 0.96473 0.97755 0.98908 1.20492 0.99349 0.82496 0.96633 1.45935 1.47013 1.10796 1.35261 1.20344 0.80263 0.88344 0.79355 1.90716 1.32945 1.70603 1.44687 1.23529 1.05818 0.94138 1.06854 1.85429 1.54598 1.09550 1.33739 1.22872 1.29799 0.95757 1.20015 0.90919 1.24995 0.94761 0.99267 0.94559 1.70020 1.27965 1.35664 1.16601 0.86166 0.79089 0.82648 0.77572 1.20288 1.20748 1.19708 0.95410 0.90733 0.91135 0.89963 0.92250 0.90101 0.91125 0.89966 0.89838 0.76837 0.90534 0.89649 0.86020 0.85866 0.90705 0.90161 0.76728 0.89161 0.89193 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.12 60.07 0.55 0.71 16 2 N -0.51 -4.63 4.69 -232.98 -1.09 -5.72 16 3 C 0.04 0.28 6.90 -2.84 -0.02 0.26 16 4 C -0.14 -0.63 6.94 -24.91 -0.17 -0.81 16 5 C -0.12 -0.63 6.48 -24.59 -0.16 -0.79 16 6 C 0.05 0.41 2.84 -67.34 -0.19 0.22 16 7 H 0.08 0.42 7.77 -51.93 -0.40 0.02 16 8 C 0.52 5.40 7.11 -10.98 -0.08 5.32 16 9 O -0.51 -7.97 16.59 5.55 0.09 -7.87 16 10 N -0.73 -5.56 5.55 -61.47 -0.34 -5.90 16 11 C 0.13 1.21 5.76 -5.20 -0.03 1.18 16 12 C -0.16 -1.06 9.63 -36.03 -0.35 -1.41 16 13 C -0.14 -1.06 9.63 -36.03 -0.35 -1.41 16 14 C 0.13 1.55 5.76 -5.20 -0.03 1.52 16 15 N -0.74 -9.79 5.55 -61.47 -0.34 -10.13 16 16 C 0.53 10.08 7.85 -10.98 -0.09 9.99 16 17 O -0.52 -12.04 15.86 5.56 0.09 -11.95 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.03 0.16 8.09 -51.93 -0.42 -0.26 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.31 7.58 -51.93 -0.39 -0.09 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.40 1.72 8.46 -40.82 -0.35 1.38 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.97 5.29 -51.93 -0.27 0.70 16 40 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.05 5.30 -51.93 -0.28 0.78 16 44 H 0.40 4.03 8.46 -40.82 -0.35 3.69 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -38.65 404.74 -9.98 -48.64 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.49 Total: 1.08 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.49 Total: -1.23 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -1.04 Total: -47.46 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.65 -9.98 -48.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.655 kcal (2) G-P(sol) polarization free energy of solvation -38.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds