Wall clock time and date at job start Sat Apr 11 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.36941 * 119.99754 * 275.31085 * 3 2 1 5 5 H 1.08001 * 120.00438 * 37.57109 * 4 3 2 6 6 C 1.38813 * 119.99907 * 217.58217 * 4 3 2 7 7 N 1.31621 * 120.00321 * 21.41466 * 6 4 3 8 8 Si 1.86799 * 119.99767 * 201.42452 * 6 4 3 9 9 H 1.48499 * 109.47542 * 89.99645 * 8 6 4 10 10 H 1.48508 * 109.46858 * 209.99549 * 8 6 4 11 11 H 1.48498 * 109.47377 * 329.99437 * 8 6 4 12 12 C 1.46495 * 120.00575 * 95.30654 * 3 2 1 13 13 C 1.53009 * 109.47016 * 270.00209 * 12 3 2 14 14 C 1.52998 * 109.46963 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99815 * 180.02562 * 15 14 13 17 17 O 1.21680 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.46687 * 119.99380 * 180.02562 * 16 15 14 19 19 S 1.76211 * 126.13251 * 359.68680 * 18 16 15 20 20 C 1.70958 * 90.31456 * 179.97438 * 19 18 16 21 21 C 1.50694 * 124.80653 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46991 * 270.32728 * 21 20 19 23 23 C 1.42900 * 114.00080 * 179.97438 * 22 21 20 24 24 N 1.29431 * 110.38750 * 0.34546 * 20 19 18 25 25 C 1.30940 * 117.36620 * 359.72601 * 24 20 19 26 26 C 1.50702 * 122.90393 * 179.97438 * 25 24 20 27 27 H 1.08992 * 109.47159 * 300.00636 * 1 2 3 28 28 H 1.09000 * 109.46704 * 60.00717 * 1 2 3 29 29 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46918 * 239.99485 * 2 1 3 31 31 H 1.09007 * 109.46539 * 119.99655 * 2 1 3 32 32 H 0.96994 * 120.00279 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47507 * 150.00355 * 12 3 2 34 34 H 1.09005 * 109.46959 * 29.99594 * 12 3 2 35 35 H 1.08995 * 109.46863 * 59.99752 * 13 12 3 36 36 H 1.08997 * 109.46761 * 299.99822 * 13 12 3 37 37 H 1.09000 * 109.47572 * 300.00270 * 14 13 12 38 38 H 1.09002 * 109.47114 * 59.99961 * 14 13 12 39 39 H 0.96999 * 119.99641 * 0.02562 * 15 14 13 40 40 H 1.08999 * 109.46947 * 30.32664 * 21 20 19 41 41 H 1.09003 * 109.47453 * 150.32936 * 21 20 19 42 42 H 1.08999 * 109.47107 * 59.99768 * 23 22 21 43 43 H 1.08997 * 109.47272 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47323 * 300.00131 * 23 22 21 45 45 H 1.09003 * 109.47164 * 270.00296 * 26 25 24 46 46 H 1.08999 * 109.47304 * 30.00562 * 26 25 24 47 47 H 1.09004 * 109.47147 * 150.00575 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9629 6 6 3.2113 2.9287 -1.3730 7 7 4.3027 2.7980 -0.6491 8 14 3.0995 4.2792 -2.6587 9 1 2.5377 5.5067 -2.0398 10 1 4.4551 4.5692 -3.1911 11 1 2.2168 3.8355 -3.7673 12 6 2.3732 2.0327 1.2632 13 6 1.1425 2.7384 1.8364 14 6 1.5129 3.4183 3.1559 15 7 0.3347 4.0945 3.7045 16 6 0.4246 4.7657 4.8698 17 8 1.4841 4.8097 5.4665 18 6 -0.7553 5.4422 5.4192 19 16 -2.3595 5.4884 4.6915 20 6 -2.9346 6.4315 5.9963 21 6 -4.3482 6.9342 6.1369 22 8 -4.4635 8.2131 5.5097 23 6 -5.7722 8.7819 5.5858 24 7 -1.9822 6.6582 6.8430 25 6 -0.8053 6.1503 6.5753 26 6 0.3903 6.3368 7.4735 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.0489 3.4030 -0.7831 33 1 3.1616 2.7641 1.0859 34 1 2.7254 1.2834 1.9721 35 1 0.3541 2.0070 2.0137 36 1 0.7903 3.4876 1.1274 37 1 1.8650 2.6688 3.8647 38 1 2.3016 4.1497 2.9790 39 1 -0.5100 4.0591 3.2290 40 1 -5.0324 6.2326 5.6599 41 1 -4.5985 7.0241 7.1940 42 1 -6.0524 8.9100 6.6313 43 1 -5.7766 9.7512 5.0875 44 1 -6.4857 8.1185 5.0971 45 1 0.9305 7.2360 7.1773 46 1 0.0567 6.4370 8.5064 47 1 1.0485 5.4723 7.3865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566574243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:07 Heat of formation + Delta-G solvation = -44.462244 kcal Electronic energy + Delta-G solvation = -26831.404770 eV Core-core repulsion = 22948.008349 eV Total energy + Delta-G solvation = -3883.396421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57841 -40.37331 -38.82096 -38.17753 -36.30277 -33.81443 -33.62143 -32.85834 -30.45377 -29.84485 -29.36184 -27.05186 -26.90983 -25.32597 -23.89751 -22.99259 -22.52456 -21.96782 -20.59832 -19.25340 -18.59170 -18.09005 -17.67245 -17.16162 -17.05100 -16.71978 -16.58905 -16.21206 -16.03919 -15.57158 -15.49997 -15.02084 -14.85775 -14.82812 -14.25087 -14.06452 -13.95207 -13.58185 -13.38814 -13.29597 -13.22939 -13.17758 -12.76571 -12.74029 -12.58625 -12.47085 -12.37206 -12.31566 -12.13735 -11.92256 -11.46497 -11.32749 -11.23680 -10.90834 -10.78506 -10.71954 -10.49022 -10.25387 -9.92777 -8.53964 -7.80058 -5.44182 -1.01971 -0.01809 0.37436 1.16681 1.45405 1.48552 1.55879 1.91841 1.96335 2.51344 2.55733 3.16888 3.24914 3.61833 3.66069 3.70419 3.93009 4.14572 4.14853 4.29044 4.32057 4.45560 4.51819 4.53415 4.58396 4.60747 4.65888 4.73637 4.76622 4.81758 4.89367 4.89813 4.95247 5.04105 5.16799 5.20470 5.33430 5.35221 5.45477 5.61865 5.70996 5.85291 6.02438 6.26606 6.44811 6.49364 6.94987 7.20103 7.89973 8.42166 9.14516 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002374 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.000295 B =11791.143863 C =12181.708049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.286 1.286 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.151 3.849 13 C -0.125 4.125 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.592 3.408 17 O -0.554 6.554 18 C -0.321 4.321 19 S 0.243 5.757 20 C 0.051 3.949 21 C 0.134 3.866 22 O -0.412 6.412 23 C 0.026 3.974 24 N -0.481 5.481 25 C 0.140 3.860 26 C -0.087 4.087 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.251 0.749 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.407 0.593 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 6.676 15.105 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.213 1.213 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.024 3.976 13 C -0.165 4.165 14 C 0.010 3.990 15 N -0.362 5.362 16 C 0.378 3.622 17 O -0.435 6.435 18 C -0.446 4.446 19 S 0.501 5.499 20 C -0.224 4.224 21 C 0.055 3.945 22 O -0.332 6.332 23 C -0.070 4.070 24 N -0.198 5.198 25 C 0.000 4.000 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.532 6.728 14.880 27.024 hybrid contribution 0.677 0.830 -0.331 1.121 sum -20.855 7.558 14.549 26.528 Atomic orbital electron populations 1.22172 0.97251 1.00789 1.00851 1.21003 0.93848 0.85658 0.98653 1.43986 1.76431 1.09576 1.02256 1.19177 1.04017 1.21156 0.94850 0.92695 1.25838 0.94059 1.03316 1.00137 1.70123 1.03779 1.38009 1.44228 0.85506 0.76552 0.80166 0.79682 1.21280 1.22322 1.19250 1.20691 0.95119 0.96172 0.85605 1.22206 1.00949 0.99598 0.93771 1.21260 0.86807 0.95752 0.95187 1.45908 1.14676 1.53110 1.22478 1.16902 0.86375 0.78046 0.80845 1.90770 1.29760 1.62672 1.60271 1.25536 1.00048 1.14929 1.04058 1.83610 0.98765 1.45546 1.21987 1.27505 1.00630 1.00102 0.94176 1.21096 0.86304 0.86481 1.00623 1.87923 1.33533 1.33314 1.78390 1.23022 0.82264 0.99401 1.02296 1.66099 0.99522 1.22634 1.31509 1.20883 0.93949 0.91953 0.93180 1.20643 0.92049 1.04163 0.97720 0.92984 0.94494 0.91658 0.95295 0.93637 0.94030 0.92180 0.95131 0.91000 0.92980 0.91205 0.93096 0.75682 0.87433 0.88466 0.92409 0.88617 0.91805 0.89935 0.89190 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.18 16 2 C 0.13 5.37 6.44 86.38 0.56 5.92 16 3 N -0.60 -28.73 2.43 -701.99 -1.71 -30.44 16 4 C -0.26 -13.91 9.45 84.03 0.79 -13.11 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.90 16 6 C -0.04 -1.97 4.95 84.86 0.42 -1.55 16 7 N -0.92 -53.24 11.47 21.65 0.25 -52.99 16 8 Si 0.95 44.16 29.60 68.60 2.03 46.20 16 9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.15 6.75 5.33 86.38 0.46 7.21 16 13 C -0.13 -4.45 5.65 30.60 0.17 -4.28 16 14 C 0.13 4.41 5.67 86.38 0.49 4.90 16 15 N -0.71 -20.19 5.55 -467.08 -2.59 -22.79 16 16 C 0.59 18.18 7.78 86.45 0.67 18.85 16 17 O -0.55 -20.23 14.27 -4.28 -0.06 -20.30 16 18 C -0.32 -8.39 6.48 23.88 0.15 -8.23 16 19 S 0.24 4.52 22.31 -56.49 -1.26 3.26 16 20 C 0.05 0.99 7.02 88.46 0.62 1.61 16 21 C 0.13 1.71 6.51 71.23 0.46 2.17 16 22 O -0.41 -6.63 10.69 -148.98 -1.59 -8.22 16 23 C 0.03 0.21 11.01 113.37 1.25 1.45 16 24 N -0.48 -11.71 10.50 -178.28 -1.87 -13.58 16 25 C 0.14 3.65 6.79 42.10 0.29 3.93 16 26 C -0.09 -2.08 9.70 71.24 0.69 -1.39 16 27 H 0.05 1.59 6.64 -2.39 -0.02 1.57 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.05 1.70 7.83 -2.38 -0.02 1.68 16 32 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.06 3.17 5.52 -2.39 -0.01 3.15 16 34 H 0.03 1.30 7.86 -2.38 -0.02 1.28 16 35 H 0.07 2.28 6.64 -2.39 -0.02 2.26 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.41 9.58 7.66 -92.71 -0.71 8.87 16 40 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.09 2.37 6.01 -2.39 -0.01 2.36 16 Total: -1.00 -69.30 401.31 1.23 -68.07 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.27 Total: 17.47 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 7.77 Total: 13.31 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -5.92 Total: -119.80 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.65 Total: -28.52 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.26 Total: 3.26 kcal Total: -69.30 1.23 -68.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566574243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.611 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds