Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99660 * 2 1 4 4 N 1.46500 * 109.47251 * 124.99786 * 3 2 1 5 5 C 1.34771 * 119.99932 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00509 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00119 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.47290 * 60.00095 * 7 5 4 9 9 C 1.53009 * 109.46961 * 300.00165 * 7 5 4 10 10 N 1.46897 * 109.47493 * 180.02562 * 7 5 4 11 11 C 1.46897 * 110.99974 * 204.99964 * 10 7 5 12 12 H 1.08993 * 110.78200 * 36.78412 * 11 10 7 13 13 C 1.55165 * 110.71796 * 160.02151 * 11 10 7 14 14 C 1.54915 * 101.57980 * 153.86496 * 13 11 10 15 15 N 1.47425 * 104.83334 * 322.99105 * 14 13 11 16 16 C 1.34777 * 125.65136 * 204.16738 * 15 14 13 17 17 O 1.21281 * 120.00173 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99667 * 359.95409 * 16 15 14 19 19 S 1.80995 * 109.46960 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00030 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99969 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00079 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47009 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47011 * 119.99970 * 24 22 20 27 27 H 1.48493 * 109.47020 * 239.99848 * 24 22 20 28 28 C 1.47022 * 108.70334 * 24.12789 * 15 14 13 29 29 H 1.07997 * 119.99437 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00081 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47282 * 4.99421 * 3 2 1 33 33 H 1.09008 * 109.46605 * 244.99503 * 3 2 1 34 34 H 0.97001 * 119.99852 * 359.97438 * 4 3 2 35 35 H 1.08993 * 109.47125 * 299.99897 * 9 7 5 36 36 H 1.08996 * 109.46528 * 60.00033 * 9 7 5 37 37 H 1.09003 * 109.47073 * 179.97438 * 9 7 5 38 38 H 1.00897 * 110.99752 * 328.95371 * 10 7 5 39 39 H 1.08995 * 111.00547 * 271.93828 * 13 11 10 40 40 H 1.09001 * 111.00003 * 35.79407 * 13 11 10 41 41 H 1.08997 * 110.36462 * 204.15099 * 14 13 11 42 42 H 1.08999 * 110.46102 * 81.87572 * 14 13 11 43 43 H 1.08997 * 109.46784 * 300.00107 * 18 16 15 44 44 H 1.09002 * 109.46871 * 60.00068 * 18 16 15 45 45 H 0.97000 * 119.99957 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.88723 * 239.52626 * 28 15 14 47 47 H 1.09000 * 110.01436 * 118.43179 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 3.7788 2.4088 1.3328 6 8 3.7150 3.3557 0.5777 7 6 4.7353 2.4368 2.4971 8 1 5.4400 1.6099 2.4083 9 6 3.9517 2.3009 3.8043 10 7 5.4698 3.7089 2.4970 11 6 6.7613 3.5711 3.1833 12 1 7.2041 2.5957 2.9820 13 6 7.7290 4.7099 2.7657 14 6 8.6552 4.8007 4.0042 15 7 7.7682 4.5613 5.1572 16 6 7.9913 4.9772 6.4196 17 8 7.1891 4.7224 7.2928 18 6 9.2379 5.7586 6.7463 19 16 9.2487 6.1680 8.5092 20 6 10.7696 7.0520 8.6088 21 1 11.3723 7.1911 7.7235 22 6 11.1932 7.5695 9.8250 23 7 10.4589 7.3995 10.9042 24 14 12.8054 8.5073 9.9304 25 1 13.4364 8.5593 8.5872 26 1 12.5440 9.8889 10.4078 27 1 13.7168 7.8196 10.8798 28 6 6.5994 3.7945 4.7017 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0445 0.5749 1.7356 35 1 3.2471 3.1276 3.8931 36 1 3.4065 1.3571 3.8045 37 1 4.6436 2.3206 4.6463 38 1 5.5947 4.0542 1.5572 39 1 8.2938 4.4357 1.8748 40 1 7.1893 5.6445 2.6122 41 1 9.1042 5.7917 4.0703 42 1 9.4306 4.0360 3.9570 43 1 10.1159 5.1583 6.5077 44 1 9.2553 6.6770 6.1594 45 1 10.7548 7.7615 11.7541 46 1 5.6870 4.3575 4.8982 47 1 6.5600 2.8340 5.2155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566759907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -43.039461 kcal Electronic energy + Delta-G solvation = -26467.269206 eV Core-core repulsion = 22583.934482 eV Total energy + Delta-G solvation = -3883.334724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54599 -39.70003 -37.69656 -36.38130 -35.37596 -33.43061 -32.41098 -31.77043 -29.73829 -29.50329 -27.49042 -26.84795 -25.46098 -23.81119 -23.01385 -21.09800 -20.94457 -20.15621 -19.33263 -17.90100 -17.51793 -16.98940 -16.60442 -16.51324 -16.24086 -15.41473 -15.15024 -15.01638 -14.79846 -14.76874 -14.21406 -13.92176 -13.82017 -13.65720 -13.37661 -13.08265 -12.93523 -12.75842 -12.55499 -12.46958 -12.21950 -12.16789 -11.79266 -11.72885 -11.68686 -11.34371 -11.06319 -11.01929 -10.99185 -10.74252 -10.49778 -10.00963 -9.78642 -9.56099 -9.38013 -9.05607 -8.92278 -8.45101 -8.20251 -6.47835 -6.19892 -3.90236 1.46094 2.17343 2.72866 2.94169 3.11516 3.22883 3.27406 3.32486 3.60099 3.79348 4.13611 4.19337 4.23025 4.29021 4.42648 4.47200 4.65137 4.71215 4.86470 4.96658 5.02606 5.11598 5.15311 5.16376 5.19968 5.24757 5.30080 5.46859 5.49736 5.55591 5.62970 5.67055 5.79398 5.83585 5.91198 5.92183 5.93550 5.96786 6.07140 6.16653 6.47113 6.57576 6.92764 7.04605 7.61632 7.71442 7.72246 8.37301 8.60797 9.25504 10.87617 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.001654 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.272148 B =16929.482060 C =17475.471076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.514 3.486 6 O -0.530 6.530 7 C 0.068 3.932 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.661 5.661 11 C 0.074 3.926 12 H 0.063 0.937 13 C -0.134 4.134 14 C 0.103 3.897 15 N -0.625 5.625 16 C 0.548 3.452 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.118 3.882 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.360 0.640 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.080 0.920 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 -16.382 -24.837 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.300 3.700 6 O -0.406 6.406 7 C -0.046 4.046 8 H 0.090 0.910 9 C -0.202 4.202 10 N -0.297 5.297 11 C -0.036 4.036 12 H 0.081 0.919 13 C -0.172 4.172 14 C -0.021 4.021 15 N -0.363 5.363 16 C 0.337 3.663 17 O -0.390 6.390 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.006 4.006 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.238 0.762 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.183 0.817 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.644 -15.747 -23.283 32.168 hybrid contribution 2.460 -0.091 -1.383 2.824 sum -13.184 -15.839 -24.666 32.142 Atomic orbital electron populations 1.24022 0.95796 1.02589 0.97588 1.22989 0.96276 0.98010 1.02566 1.20421 0.91839 0.95738 0.89679 1.45955 1.41070 1.20061 1.30890 1.20724 0.81232 0.82112 0.85938 1.90717 1.67928 1.34926 1.47030 1.21574 0.95435 0.93138 0.94413 0.90970 1.21889 1.00708 1.02049 0.95520 1.60314 1.18964 1.25611 1.24821 1.22648 0.88441 0.98196 0.94312 0.91934 1.22970 0.97036 0.99582 0.97630 1.22240 0.93067 1.02248 0.84510 1.48458 1.23096 1.56813 1.07982 1.20016 0.87580 0.78762 0.79963 1.90706 1.47050 1.55738 1.45459 1.23505 0.97066 1.01668 1.07448 1.85404 1.30088 1.70890 0.97063 1.22904 1.07177 1.40431 0.97728 0.90888 1.24989 0.97969 0.95910 0.94700 1.70033 1.37332 1.43367 0.99553 0.86119 0.81880 0.79242 0.78265 1.19616 1.20568 1.20584 1.21947 0.90085 0.96186 0.92343 0.87759 0.88064 0.86635 0.90903 0.90623 0.76243 0.91066 0.92137 0.90632 0.81654 0.89852 0.89233 0.89991 0.91324 0.89340 0.89285 0.92253 0.90143 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 14.32 29.01 0.42 -0.14 16 2 C -0.18 -0.67 9.63 -36.03 -0.35 -1.02 16 3 C 0.15 0.82 6.11 -5.19 -0.03 0.79 16 4 N -0.73 -4.14 5.44 -61.47 -0.33 -4.48 16 5 C 0.51 4.37 7.18 -10.99 -0.08 4.29 16 6 O -0.53 -6.50 15.65 5.55 0.09 -6.42 16 7 C 0.07 0.50 3.03 -68.86 -0.21 0.29 16 8 H 0.07 0.41 7.49 -51.93 -0.39 0.02 16 9 C -0.14 -1.04 9.11 37.16 0.34 -0.70 16 10 N -0.66 -6.00 6.01 -99.03 -0.60 -6.59 16 11 C 0.07 0.66 3.23 -65.87 -0.21 0.45 16 12 H 0.06 0.48 7.54 -51.93 -0.39 0.08 16 13 C -0.13 -1.13 6.52 -24.57 -0.16 -1.29 16 14 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 15 N -0.63 -9.29 3.33 -170.51 -0.57 -9.86 16 16 C 0.55 10.89 7.87 -10.98 -0.09 10.80 16 17 O -0.52 -12.26 16.19 5.56 0.09 -12.17 16 18 C -0.15 -3.06 5.16 36.01 0.19 -2.87 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.12 1.48 4.97 -3.06 -0.02 1.46 16 29 H 0.10 0.25 8.06 -52.49 -0.42 -0.18 16 30 H 0.10 0.35 7.84 -52.49 -0.41 -0.07 16 31 H 0.12 0.31 8.06 -52.49 -0.42 -0.12 16 32 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.40 1.33 7.88 -40.82 -0.32 1.01 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 37 H 0.07 0.62 5.91 -51.93 -0.31 0.31 16 38 H 0.36 3.39 7.21 -39.29 -0.28 3.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.14 7.99 -51.93 -0.42 0.73 16 47 H 0.06 0.77 7.48 -51.93 -0.39 0.39 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -36.89 401.22 -9.22 -46.11 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.43 Total: 0.25 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.02 Total: 0.11 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.76 Total: -46.53 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.89 -9.22 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566759907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.075 kcal (2) G-P(sol) polarization free energy of solvation -36.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds