Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46971 * 2 1 4 4 C 1.46763 * 124.34993 * 269.99955 * 3 2 1 5 5 C 1.54689 * 105.53177 * 196.90227 * 4 3 2 6 6 C 1.54619 * 101.66977 * 334.74029 * 5 4 3 7 7 H 1.09003 * 110.48811 * 265.90558 * 6 5 4 8 8 N 1.46900 * 110.48719 * 143.39924 * 6 5 4 9 9 C 1.46897 * 111.00551 * 156.84118 * 8 6 5 10 10 H 1.09005 * 112.84722 * 23.79607 * 9 8 6 11 11 C 1.53776 * 113.61808 * 154.99470 * 9 8 6 12 12 C 1.53783 * 87.08021 * 139.98208 * 11 9 8 13 13 H 1.09002 * 113.61213 * 219.93623 * 12 11 9 14 14 N 1.46495 * 113.61800 * 89.11698 * 12 11 9 15 15 C 1.34779 * 120.00299 * 156.52905 * 14 12 11 16 16 O 1.21283 * 119.99753 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99843 * 180.02562 * 15 14 12 18 18 S 1.81001 * 109.46896 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00053 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00436 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99929 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99846 * 179.72260 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 89.99559 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99475 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99901 * 23 21 19 27 27 C 1.53784 * 87.17384 * 334.52584 * 12 11 9 28 28 C 1.34417 * 124.34920 * 89.97566 * 3 2 1 29 29 O 1.21283 * 124.94146 * 359.64315 * 28 3 2 30 30 H 1.09000 * 109.47130 * 300.00038 * 1 2 3 31 31 H 1.09007 * 109.47240 * 59.99991 * 1 2 3 32 32 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47130 * 239.99962 * 2 1 3 34 34 H 1.08999 * 109.46623 * 120.00142 * 2 1 3 35 35 H 1.09006 * 110.24633 * 315.99522 * 4 3 2 36 36 H 1.09000 * 110.24941 * 77.90422 * 4 3 2 37 37 H 1.09002 * 111.08055 * 216.61798 * 5 4 3 38 38 H 1.09004 * 110.94269 * 92.80059 * 5 4 3 39 39 H 1.00903 * 110.99626 * 280.79091 * 8 6 5 40 40 H 1.09001 * 113.61313 * 25.43223 * 11 9 8 41 41 H 1.08999 * 113.61726 * 254.52760 * 11 9 8 42 42 H 0.97004 * 119.99811 * 336.53451 * 14 12 11 43 43 H 1.08998 * 109.46989 * 60.00366 * 17 15 14 44 44 H 1.08996 * 109.47123 * 299.99392 * 17 15 14 45 45 H 0.97000 * 120.00210 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.61536 * 140.02231 * 27 12 11 47 47 H 1.08999 * 113.61280 * 270.92783 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1732 3.3479 -0.7490 6 6 2.7686 3.4756 0.7378 7 1 1.9740 4.2125 0.8550 8 7 3.9316 3.8408 1.5576 9 6 3.5123 4.4882 2.8077 10 1 2.4963 4.2238 3.1012 11 6 4.5373 4.3522 3.9459 12 6 4.2085 5.8095 4.3104 13 1 5.0817 6.3955 4.5973 14 7 3.0986 5.9416 5.2574 15 6 2.9929 7.0466 6.0219 16 8 3.8168 7.9314 5.9261 17 6 1.8514 7.1821 6.9964 18 16 1.9865 8.7629 7.8677 19 6 0.5691 8.6603 8.9093 20 1 -0.0686 7.7896 8.8693 21 6 0.2728 9.6980 9.7822 22 7 -0.7892 9.6237 10.5565 23 14 1.3761 11.2036 9.8521 24 1 0.8943 12.2160 8.8783 25 1 1.3430 11.7784 11.2210 26 1 2.7681 10.8135 9.5124 27 6 3.7922 6.0027 2.8426 28 6 2.2707 2.0964 1.1098 29 8 2.1215 1.6943 2.2442 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.8328 1.5532 -1.9382 36 1 1.3636 2.5291 -1.6441 37 1 2.9277 4.2560 -1.2996 38 1 4.2323 3.1091 -0.8461 39 1 4.5099 3.0352 1.7439 40 1 5.5602 4.2093 3.5976 41 1 4.2460 3.6341 4.7125 42 1 2.4399 5.2338 5.3343 43 1 1.8906 6.3658 7.7176 44 1 0.9057 7.1445 6.4558 45 1 -0.9966 10.3490 11.1662 46 1 2.8997 6.6161 2.7190 47 1 4.6118 6.3102 2.1932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566783159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -45.470243 kcal Electronic energy + Delta-G solvation = -26778.126863 eV Core-core repulsion = 22894.686733 eV Total energy + Delta-G solvation = -3883.440131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13207 -40.00528 -38.18251 -36.88963 -35.43125 -33.36516 -32.41531 -32.00141 -29.52848 -29.00604 -26.95484 -25.87411 -25.59372 -24.15143 -23.37086 -22.03591 -20.84775 -19.87337 -19.39300 -17.85355 -17.54485 -17.04039 -16.54694 -16.28728 -16.01947 -15.60834 -14.98458 -14.93816 -14.80815 -14.68338 -14.32198 -14.01241 -13.95629 -13.72908 -13.38764 -13.20619 -12.86271 -12.77143 -12.73645 -12.63409 -12.46940 -12.38036 -11.94934 -11.74434 -11.66940 -11.52083 -11.24126 -10.98895 -10.87813 -10.61628 -10.50450 -10.41426 -9.83514 -9.48925 -9.25815 -8.99368 -8.94533 -8.76427 -8.47527 -6.89071 -6.26616 -3.98079 2.08732 2.46761 2.78640 2.98818 3.32414 3.36153 3.52743 3.58904 3.68297 3.89372 4.02254 4.28393 4.35406 4.39077 4.46577 4.51409 4.54346 4.67181 4.75761 4.81394 4.84351 4.88254 4.92982 4.98258 5.12363 5.18598 5.28927 5.33079 5.36774 5.38590 5.51543 5.57019 5.66187 5.69916 5.79575 5.86927 5.92495 6.00211 6.04408 6.05862 6.50633 6.59025 6.73842 6.82853 7.65918 7.69341 7.96495 8.44289 8.53348 9.19525 10.82625 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.001904 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.298148 B =14703.298301 C =15555.690646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.619 5.619 4 C 0.099 3.901 5 C -0.119 4.119 6 C 0.055 3.945 7 H 0.115 0.885 8 N -0.647 5.647 9 C 0.059 3.941 10 H 0.081 0.919 11 C -0.147 4.147 12 C 0.125 3.875 13 H 0.105 0.895 14 N -0.720 5.720 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.137 4.137 28 C 0.485 3.515 29 O -0.525 6.525 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.345 0.655 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.069 0.931 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 -20.114 -28.351 35.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.354 5.354 4 C -0.024 4.024 5 C -0.158 4.158 6 C -0.059 4.059 7 H 0.133 0.867 8 N -0.277 5.277 9 C -0.051 4.051 10 H 0.099 0.901 11 C -0.186 4.186 12 C 0.018 3.982 13 H 0.123 0.877 14 N -0.373 5.373 15 C 0.320 3.680 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.176 4.176 28 C 0.271 3.729 29 O -0.401 6.401 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.165 0.835 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.234 0.766 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.121 -18.245 -28.073 34.701 hybrid contribution -1.625 -1.610 0.711 2.395 sum 7.497 -19.855 -27.362 34.628 Atomic orbital electron populations 1.22161 0.95606 1.02525 1.02552 1.21370 0.94550 0.81132 1.03110 1.48388 1.65700 1.13776 1.07536 1.22207 0.99785 0.93027 0.87415 1.22684 1.00944 0.98286 0.93844 1.22471 0.94931 0.93495 0.94992 0.86730 1.60896 1.16582 1.31760 1.18491 1.23259 0.98292 0.95581 0.87966 0.90133 1.23567 1.00211 0.96975 0.97847 1.21601 0.91002 0.96684 0.88892 0.87708 1.45701 1.29099 1.21550 1.40977 1.20279 0.86309 0.81236 0.80190 1.90693 1.41953 1.39426 1.67168 1.23285 0.99166 1.04957 1.00107 1.84768 1.38590 1.19971 1.48149 1.22327 1.10513 1.09383 1.24648 0.89397 1.24725 0.94803 0.98002 0.93858 1.69943 1.25273 1.33287 1.23227 0.86722 0.83451 0.83303 0.78309 1.19215 1.19963 1.15904 1.23609 1.02596 0.95016 0.96402 1.22049 0.77199 0.88997 0.84694 1.90752 1.52766 1.75527 1.21006 0.92161 0.92384 0.91298 0.90348 0.90068 0.90197 0.90949 0.88622 0.89168 0.83542 0.88278 0.90680 0.76640 0.88434 0.88511 0.91967 0.91185 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.12 0.67 6.65 -4.04 -0.03 0.65 16 3 N -0.62 -4.02 2.93 -172.28 -0.51 -4.53 16 4 C 0.10 0.35 7.35 -3.01 -0.02 0.33 16 5 C -0.12 -0.46 6.90 -24.99 -0.17 -0.63 16 6 C 0.06 0.38 3.08 -67.73 -0.21 0.17 16 7 H 0.11 0.83 7.87 -51.93 -0.41 0.42 16 8 N -0.65 -4.86 6.36 -98.76 -0.63 -5.49 16 9 C 0.06 0.53 3.69 -66.76 -0.25 0.28 16 10 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 11 C -0.15 -1.33 7.39 -25.92 -0.19 -1.53 16 12 C 0.13 1.46 4.30 -67.12 -0.29 1.17 16 13 H 0.10 1.40 7.50 -51.93 -0.39 1.01 16 14 N -0.72 -9.64 5.26 -53.02 -0.28 -9.92 16 15 C 0.53 9.71 7.85 -10.98 -0.09 9.62 16 16 O -0.52 -11.34 15.48 5.55 0.09 -11.25 16 17 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 19 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 20 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 21 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.87 13.97 55.49 0.78 -26.10 16 23 Si 0.86 22.05 27.74 -169.99 -4.71 17.33 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 27 C -0.14 -1.39 7.70 -25.77 -0.20 -1.58 16 28 C 0.49 4.42 7.37 -10.86 -0.08 4.34 16 29 O -0.53 -6.91 17.32 5.56 0.10 -6.82 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.57 7.93 -51.93 -0.41 0.15 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.34 8.09 -51.93 -0.42 -0.08 16 39 H 0.35 2.59 8.28 -39.29 -0.33 2.26 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.40 4.47 8.70 -40.82 -0.36 4.12 16 43 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -36.23 401.11 -9.61 -45.84 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.79 Total: 2.71 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.70 Total: -2.20 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.64 Total: -46.03 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.18 Total: -18.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.23 -9.61 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566783159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.366 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds