Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46971 * 2 1 4 4 C 1.46763 * 124.34993 * 269.99955 * 3 2 1 5 5 C 1.54689 * 105.53177 * 196.90227 * 4 3 2 6 6 C 1.54619 * 101.66977 * 334.74029 * 5 4 3 7 7 H 1.09003 * 110.48811 * 265.90558 * 6 5 4 8 8 N 1.46900 * 110.48719 * 143.39924 * 6 5 4 9 9 C 1.46897 * 111.00551 * 156.84118 * 8 6 5 10 10 H 1.09005 * 112.84722 * 23.79607 * 9 8 6 11 11 C 1.53776 * 113.61808 * 154.99470 * 9 8 6 12 12 C 1.53783 * 87.08021 * 139.98208 * 11 9 8 13 13 H 1.09002 * 113.61213 * 219.93623 * 12 11 9 14 14 N 1.46495 * 113.61800 * 89.11698 * 12 11 9 15 15 C 1.34779 * 120.00299 * 156.52905 * 14 12 11 16 16 O 1.21283 * 119.99753 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99843 * 180.02562 * 15 14 12 18 18 S 1.81001 * 109.46896 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00053 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00436 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99929 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99846 * 179.72260 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 89.99559 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99475 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99901 * 23 21 19 27 27 C 1.53784 * 87.17384 * 334.52584 * 12 11 9 28 28 C 1.34417 * 124.34920 * 89.97566 * 3 2 1 29 29 O 1.21283 * 124.94146 * 359.64315 * 28 3 2 30 30 H 1.09000 * 109.47130 * 300.00038 * 1 2 3 31 31 H 1.09007 * 109.47240 * 59.99991 * 1 2 3 32 32 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47130 * 239.99962 * 2 1 3 34 34 H 1.08999 * 109.46623 * 120.00142 * 2 1 3 35 35 H 1.09006 * 110.24633 * 315.99522 * 4 3 2 36 36 H 1.09000 * 110.24941 * 77.90422 * 4 3 2 37 37 H 1.09002 * 111.08055 * 216.61798 * 5 4 3 38 38 H 1.09004 * 110.94269 * 92.80059 * 5 4 3 39 39 H 1.00903 * 110.99626 * 280.79091 * 8 6 5 40 40 H 1.09001 * 113.61313 * 25.43223 * 11 9 8 41 41 H 1.08999 * 113.61726 * 254.52760 * 11 9 8 42 42 H 0.97004 * 119.99811 * 336.53451 * 14 12 11 43 43 H 1.08998 * 109.46989 * 60.00366 * 17 15 14 44 44 H 1.08996 * 109.47123 * 299.99392 * 17 15 14 45 45 H 0.97000 * 120.00210 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.61536 * 140.02231 * 27 12 11 47 47 H 1.08999 * 113.61280 * 270.92783 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1732 3.3479 -0.7490 6 6 2.7686 3.4756 0.7378 7 1 1.9740 4.2125 0.8550 8 7 3.9316 3.8408 1.5576 9 6 3.5123 4.4882 2.8077 10 1 2.4963 4.2238 3.1012 11 6 4.5373 4.3522 3.9459 12 6 4.2085 5.8095 4.3104 13 1 5.0817 6.3955 4.5973 14 7 3.0986 5.9416 5.2574 15 6 2.9929 7.0466 6.0219 16 8 3.8168 7.9314 5.9261 17 6 1.8514 7.1821 6.9964 18 16 1.9865 8.7629 7.8677 19 6 0.5691 8.6603 8.9093 20 1 -0.0686 7.7896 8.8693 21 6 0.2728 9.6980 9.7822 22 7 -0.7892 9.6237 10.5565 23 14 1.3761 11.2036 9.8521 24 1 0.8943 12.2160 8.8783 25 1 1.3430 11.7784 11.2210 26 1 2.7681 10.8135 9.5124 27 6 3.7922 6.0027 2.8426 28 6 2.2707 2.0964 1.1098 29 8 2.1215 1.6943 2.2442 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.8328 1.5532 -1.9382 36 1 1.3636 2.5291 -1.6441 37 1 2.9277 4.2560 -1.2996 38 1 4.2323 3.1091 -0.8461 39 1 4.5099 3.0352 1.7439 40 1 5.5602 4.2093 3.5976 41 1 4.2460 3.6341 4.7125 42 1 2.4399 5.2338 5.3343 43 1 1.8906 6.3658 7.7176 44 1 0.9057 7.1445 6.4558 45 1 -0.9966 10.3490 11.1662 46 1 2.8997 6.6161 2.7190 47 1 4.6118 6.3102 2.1932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566783159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = -72.719632 kcal Electronic energy + Delta-G solvation = -26779.308486 eV Core-core repulsion = 22894.686733 eV Total energy + Delta-G solvation = -3884.621753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75488 -41.09223 -39.35975 -37.54612 -36.10695 -34.68773 -34.35937 -32.77859 -30.69070 -29.79320 -27.88534 -27.51472 -26.67887 -24.73754 -24.09911 -22.53338 -22.13236 -20.44381 -20.36517 -19.88197 -18.23338 -17.93750 -17.51823 -17.22594 -17.02404 -16.88667 -16.59786 -16.23771 -15.88063 -15.48866 -15.28568 -14.96581 -14.86800 -14.66755 -14.48140 -14.41102 -14.00857 -13.83284 -13.40635 -13.33720 -13.32334 -13.21870 -13.06296 -12.98428 -12.79115 -12.67641 -12.39040 -12.14898 -11.97951 -11.87008 -11.65329 -11.34247 -11.17815 -11.15968 -11.02964 -10.55943 -10.10713 -9.77095 -9.45537 -9.00970 -8.52491 -6.23644 0.96995 1.31175 1.42932 1.46037 1.52182 1.54857 2.00600 2.18639 2.25322 2.69896 2.85467 3.01369 3.37738 3.50763 3.54986 3.65374 3.80617 3.92516 4.04196 4.09338 4.14852 4.18438 4.21010 4.22921 4.43446 4.44011 4.45208 4.61052 4.69071 4.79964 4.82450 4.85226 4.88892 4.94436 5.06132 5.09278 5.13419 5.18643 5.22848 5.53304 5.58986 5.69597 5.93576 6.05965 6.10193 6.21230 6.42111 6.92243 7.07396 7.15811 8.59998 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.001904 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.298148 B =14703.298301 C =15555.690646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.616 5.616 4 C 0.096 3.904 5 C -0.108 4.108 6 C 0.054 3.946 7 H 0.110 0.890 8 N -0.639 5.639 9 C 0.067 3.933 10 H 0.066 0.934 11 C -0.132 4.132 12 C 0.111 3.889 13 H 0.090 0.910 14 N -0.698 5.698 15 C 0.540 3.460 16 O -0.558 6.558 17 C -0.113 4.113 18 S -0.170 6.170 19 C -0.531 4.531 20 H 0.060 0.940 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.258 1.258 26 H -0.236 1.236 27 C -0.127 4.127 28 C 0.474 3.526 29 O -0.577 6.577 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.348 0.652 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.412 0.588 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.277 0.723 46 H 0.057 0.943 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -20.866 -31.263 38.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.349 5.349 4 C -0.025 4.025 5 C -0.146 4.146 6 C -0.060 4.060 7 H 0.128 0.872 8 N -0.269 5.269 9 C -0.043 4.043 10 H 0.084 0.916 11 C -0.171 4.171 12 C 0.005 3.995 13 H 0.108 0.892 14 N -0.351 5.351 15 C 0.325 3.675 16 O -0.436 6.436 17 C -0.264 4.264 18 S 0.056 5.944 19 C -0.679 4.679 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.182 1.182 26 H -0.160 1.160 27 C -0.166 4.166 28 C 0.261 3.739 29 O -0.457 6.457 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.249 0.751 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.374 -19.052 -31.056 37.882 hybrid contribution -2.064 -1.563 1.481 2.982 sum 8.310 -20.614 -29.575 36.996 Atomic orbital electron populations 1.22114 0.95540 1.03122 1.01533 1.21493 0.94590 0.80899 1.03650 1.48569 1.64279 1.14086 1.07973 1.22464 1.00720 0.92886 0.86479 1.22701 1.01361 0.99245 0.91335 1.22571 0.94588 0.92001 0.96803 0.87230 1.60911 1.16749 1.31766 1.17497 1.23053 0.97545 0.94897 0.88789 0.91627 1.23516 1.01274 0.94687 0.97578 1.21811 0.89828 0.98629 0.89196 0.89197 1.45498 1.29578 1.20181 1.39813 1.19915 0.85285 0.81957 0.80321 1.90681 1.43218 1.41132 1.68611 1.23279 1.00908 1.01709 1.00516 1.84654 1.36824 1.24520 1.48372 1.22469 1.11389 1.08553 1.25445 0.92128 1.25604 0.96142 1.00869 0.93535 1.70022 1.26794 1.34605 1.24062 0.85835 0.81413 0.79790 0.79142 1.18581 1.18234 1.16036 1.23541 1.02371 0.95625 0.95107 1.22482 0.76920 0.90030 0.84509 1.90713 1.55225 1.76702 1.23061 0.95152 0.91251 0.89996 0.87225 0.92064 0.87748 0.89639 0.86949 0.88571 0.83290 0.86388 0.90835 0.75130 0.86997 0.87030 0.91336 0.92370 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.24 71.98 0.74 -0.91 16 2 C 0.12 1.13 6.65 86.38 0.57 1.71 16 3 N -0.62 -7.00 2.93 -817.56 -2.40 -9.40 16 4 C 0.10 0.37 7.35 86.91 0.64 1.00 16 5 C -0.11 -0.51 6.90 31.72 0.22 -0.29 16 6 C 0.05 0.66 3.08 44.90 0.14 0.80 16 7 H 0.11 1.46 7.87 -2.39 -0.02 1.44 16 8 N -0.64 -8.53 6.36 -466.37 -2.97 -11.49 16 9 C 0.07 1.13 3.69 45.53 0.17 1.30 16 10 H 0.07 1.34 7.76 -2.38 -0.02 1.32 16 11 C -0.13 -2.19 7.39 31.12 0.23 -1.96 16 12 C 0.11 2.48 4.30 45.52 0.20 2.68 16 13 H 0.09 2.35 7.50 -2.39 -0.02 2.33 16 14 N -0.70 -18.09 5.26 -440.03 -2.32 -20.40 16 15 C 0.54 19.34 7.85 87.66 0.69 20.03 16 16 O -0.56 -24.40 15.48 -3.04 -0.05 -24.44 16 17 C -0.11 -4.45 6.16 71.24 0.44 -4.01 16 18 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 19 C -0.53 -31.57 10.04 67.96 0.68 -30.88 16 20 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 21 C 0.04 2.62 5.50 84.86 0.47 3.08 16 22 N -0.92 -56.65 13.97 21.65 0.30 -56.35 16 23 Si 0.92 45.64 27.74 68.60 1.90 47.55 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.76 6.74 99.48 0.67 -11.08 16 27 C -0.13 -2.41 7.70 31.21 0.24 -2.17 16 28 C 0.47 8.39 7.37 87.90 0.65 9.04 16 29 O -0.58 -15.62 17.32 -3.04 -0.05 -15.68 16 30 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 35 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 37 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.39 8.09 -2.38 -0.02 0.37 16 39 H 0.35 4.60 8.28 -89.69 -0.74 3.86 16 40 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 8.77 8.70 -92.71 -0.81 7.96 16 43 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 45 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -80.68 401.11 -1.16 -81.85 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.61 Total: 18.79 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.07 Total: -0.57 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -7.38 Total: -97.65 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.12 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -80.68 -1.16 -81.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566783159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.127 kcal (2) G-P(sol) polarization free energy of solvation -80.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds