Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47370 * 2 1 4 4 C 1.50694 * 109.47191 * 239.99437 * 2 1 3 5 5 H 1.07997 * 120.00537 * 274.89864 * 4 2 1 6 6 C 1.37886 * 119.99762 * 94.90220 * 4 2 1 7 7 N 1.31509 * 120.00288 * 184.82960 * 6 4 2 8 8 Si 1.86806 * 119.99753 * 4.83109 * 6 4 2 9 9 H 1.48500 * 109.46989 * 94.80565 * 8 6 4 10 10 H 1.48495 * 109.46663 * 214.80598 * 8 6 4 11 11 H 1.48504 * 109.47141 * 334.80410 * 8 6 4 12 12 N 1.46501 * 109.46848 * 119.99613 * 2 1 3 13 13 C 1.46501 * 119.99692 * 60.00353 * 12 2 1 14 14 C 1.34778 * 120.00415 * 239.99602 * 12 2 1 15 15 O 1.21278 * 119.99642 * 5.59593 * 14 12 2 16 16 C 1.50695 * 120.00091 * 185.59022 * 14 12 2 17 17 C 1.50695 * 115.55296 * 66.00172 * 16 14 12 18 18 C 1.38334 * 119.94099 * 209.54473 * 17 16 14 19 19 C 1.38293 * 120.23349 * 180.25183 * 18 17 16 20 20 C 1.38048 * 120.11998 * 359.49141 * 19 18 17 21 21 C 1.39279 * 119.87762 * 0.48332 * 20 19 18 22 22 C 1.48466 * 120.11782 * 179.79138 * 21 20 19 23 23 N 1.34044 * 126.67623 * 179.66237 * 22 21 20 24 24 N 1.28987 * 107.27014 * 179.83579 * 23 22 21 25 25 N 1.28737 * 108.94229 * 0.43860 * 24 23 22 26 26 H 0.96996 * 125.34067 * 179.74449 * 25 24 23 27 27 N 1.28875 * 109.31455 * 359.71858 * 25 24 23 28 28 C 1.38009 * 119.93900 * 29.51948 * 17 16 14 29 29 C 1.53002 * 117.49737 * 211.67055 * 16 14 12 30 30 C 1.53007 * 117.49820 * 280.32790 * 16 14 12 31 31 H 1.09002 * 109.47412 * 184.95381 * 1 2 3 32 32 H 1.09008 * 109.47300 * 304.95695 * 1 2 3 33 33 H 1.09009 * 109.47262 * 64.95423 * 1 2 3 34 34 H 0.97000 * 120.00630 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47117 * 264.75567 * 13 12 2 36 36 H 1.08994 * 109.47454 * 24.75744 * 13 12 2 37 37 H 1.09001 * 109.47128 * 144.76183 * 13 12 2 38 38 H 1.08002 * 119.88447 * 359.97071 * 18 17 16 39 39 H 1.08004 * 119.94045 * 179.71626 * 19 18 17 40 40 H 1.08002 * 120.06251 * 180.27869 * 20 19 18 41 41 H 1.07994 * 120.05982 * 0.02562 * 28 17 16 42 42 H 1.08997 * 117.50078 * 215.00617 * 29 16 14 43 43 H 1.09004 * 117.49884 * 0.02562 * 29 16 14 44 44 H 1.09001 * 117.49588 * 359.97438 * 30 16 14 45 45 H 1.08996 * 117.49821 * 145.00283 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1370 -1.7854 -1.2283 6 6 2.3583 0.0118 -2.3587 7 7 2.7056 -0.6135 -3.4623 8 14 2.3066 1.8788 -2.3198 9 1 3.6619 2.4052 -2.0178 10 1 1.8604 2.3891 -3.6410 11 1 1.3565 2.3259 -1.2698 12 7 2.0182 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0029 1.1509 1.9454 16 6 3.3988 -0.7776 3.2468 17 6 4.4242 -1.8223 2.8887 18 6 4.5920 -2.9311 3.6986 19 6 5.5347 -3.8909 3.3785 20 6 6.3065 -3.7521 2.2424 21 6 6.1412 -2.6379 1.4232 22 6 6.9716 -2.4809 0.2025 23 7 6.9188 -1.4710 -0.6773 24 7 7.8012 -1.7095 -1.5874 25 7 8.3899 -2.8220 -1.3173 26 1 9.0921 -3.2286 -1.8487 27 7 7.9002 -3.3105 -0.2299 28 6 5.1937 -1.6712 1.7531 29 6 3.6062 -0.0014 4.5489 30 6 2.4996 -1.0547 4.4534 31 1 -0.3634 -1.0238 0.0887 32 1 -0.3634 0.5888 0.8423 33 1 -0.3634 0.4351 -0.9311 34 1 2.9346 -0.1055 -4.2562 35 1 0.7901 -2.1448 2.0771 36 1 1.4386 -2.5731 0.4759 37 1 2.5007 -2.6051 1.9038 38 1 3.9877 -3.0454 4.5865 39 1 5.6650 -4.7525 4.0167 40 1 7.0393 -4.5045 1.9909 41 1 5.0619 -0.8052 1.1216 42 1 4.4843 -0.2463 5.1465 43 1 3.3041 1.0459 4.5642 44 1 1.4700 -0.6999 4.4057 45 1 2.6496 -1.9925 4.9880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = 126.673424 kcal Electronic energy + Delta-G solvation = -30474.443293 eV Core-core repulsion = 26495.316672 eV Total energy + Delta-G solvation = -3979.126621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.49916 -41.66047 -39.91657 -37.76374 -36.96150 -35.44537 -34.64711 -34.50544 -32.30747 -31.77964 -31.27451 -27.68465 -27.28189 -26.26102 -25.66567 -25.23226 -23.55914 -23.43638 -22.49357 -21.42227 -20.21246 -19.62389 -19.16712 -18.35499 -18.18738 -17.51512 -17.18488 -16.38967 -16.32421 -16.19586 -15.63593 -15.47781 -15.03524 -14.96518 -14.53618 -14.46202 -14.29379 -14.13792 -13.75039 -13.67910 -13.36084 -13.23774 -13.11024 -12.92837 -12.72961 -12.70089 -12.47070 -12.38047 -12.33305 -12.21159 -12.12855 -12.02328 -11.79713 -11.49898 -11.43952 -11.26547 -10.78178 -10.57729 -9.74050 -9.49548 -9.30992 -8.38286 -6.39703 -0.29959 0.14540 0.37029 1.19834 1.28805 1.30494 1.36411 1.39905 1.68333 2.24489 2.28914 2.60342 2.68424 3.02675 3.07763 3.16054 3.54534 3.64793 3.87533 4.05055 4.10221 4.13736 4.21895 4.37711 4.40533 4.45578 4.46761 4.64418 4.65921 4.74398 4.76073 4.77868 4.84468 4.96357 5.00993 5.02967 5.08617 5.14351 5.26828 5.33476 5.47129 5.49333 5.53873 5.57053 5.60868 5.83548 5.96955 6.15561 6.64021 6.78160 7.08612 7.23900 7.39289 8.77389 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.006110 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.822091 B = 4581.641817 C = 7069.722915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.219 3.781 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.049 0.951 6 C 0.034 3.966 7 N -0.931 5.931 8 Si 0.916 3.084 9 H -0.292 1.292 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.585 5.585 13 C 0.085 3.915 14 C 0.533 3.467 15 O -0.605 6.605 16 C -0.142 4.142 17 C -0.041 4.041 18 C -0.083 4.083 19 C -0.101 4.101 20 C -0.080 4.080 21 C -0.034 4.034 22 C 0.205 3.795 23 N -0.309 5.309 24 N -0.067 5.067 25 N -0.198 5.198 26 H 0.494 0.506 27 N -0.283 5.283 28 C -0.088 4.088 29 C -0.136 4.136 30 C -0.119 4.119 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 -11.956 18.767 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.117 3.883 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.067 0.933 6 C -0.166 4.166 7 N -0.571 5.571 8 Si 0.742 3.258 9 H -0.219 1.219 10 H -0.196 1.196 11 H -0.172 1.172 12 N -0.314 5.314 13 C -0.058 4.058 14 C 0.322 3.678 15 O -0.487 6.487 16 C -0.145 4.145 17 C -0.041 4.041 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.038 4.038 22 C -0.074 4.074 23 N -0.181 5.181 24 N -0.061 5.061 25 N -0.049 5.049 26 H 0.354 0.646 27 N -0.137 5.137 28 C -0.109 4.109 29 C -0.173 4.173 30 C -0.156 4.156 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.192 0.808 39 H 0.197 0.803 40 H 0.167 0.833 41 H 0.098 0.902 42 H 0.147 0.853 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.886 -11.020 17.872 22.097 hybrid contribution 0.631 1.077 -1.683 2.095 sum 7.516 -9.944 16.189 20.432 Atomic orbital electron populations 1.22045 0.95656 1.01662 1.00081 1.19194 0.92806 0.93449 0.82882 0.94472 1.21257 1.43298 0.94408 0.95950 0.93286 1.25525 0.94161 1.01651 0.95259 1.69977 1.47526 1.37180 1.02385 0.86201 0.78774 0.82686 0.78114 1.21893 1.19639 1.17167 1.48118 1.48650 1.13135 1.21476 1.21814 1.01382 0.80757 1.01812 1.20143 0.77886 0.86372 0.83409 1.90594 1.63143 1.18057 1.76948 1.20006 1.02898 1.02101 0.89514 1.18621 0.95160 0.95526 0.94840 1.21557 0.97894 0.91037 0.99588 1.21500 0.94179 1.00097 0.96017 1.21416 0.99778 0.94900 0.93951 1.17375 0.96805 0.98358 0.91223 1.24120 0.96296 0.88837 0.98167 1.76281 1.14970 1.24831 1.01992 1.78916 1.04590 1.02897 1.19747 1.47782 1.27775 1.13557 1.15785 0.64636 1.74755 1.13157 1.24325 1.01418 1.20810 0.95202 0.97780 0.97082 1.23175 1.02243 0.97761 0.94128 1.23414 0.95824 1.02069 0.94256 0.91625 0.93612 0.93259 0.92555 0.90252 0.92501 0.90341 0.80834 0.80328 0.83273 0.90210 0.85296 0.89604 0.87993 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.25 71.98 0.67 -5.11 16 2 C 0.22 11.08 2.26 44.24 0.10 11.18 16 3 H 0.04 2.11 3.84 -2.39 -0.01 2.10 16 4 C -0.51 -29.96 8.69 25.60 0.22 -29.74 16 5 H 0.05 3.09 6.90 -2.91 -0.02 3.07 16 6 C 0.03 2.06 5.47 84.66 0.46 2.53 16 7 N -0.93 -60.17 13.96 21.45 0.30 -59.87 16 8 Si 0.92 49.53 27.31 68.60 1.87 51.40 16 9 H -0.29 -16.62 7.11 99.48 0.71 -15.91 16 10 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.25 -12.77 6.37 99.48 0.63 -12.13 16 12 N -0.58 -25.08 2.75 -826.82 -2.28 -27.35 16 13 C 0.08 2.82 9.00 127.77 1.15 3.97 16 14 C 0.53 22.59 5.74 87.66 0.50 23.10 16 15 O -0.60 -31.37 16.05 -3.02 -0.05 -31.42 16 16 C -0.14 -4.13 1.37 -53.67 -0.07 -4.20 16 17 C -0.04 -1.12 3.55 -19.90 -0.07 -1.20 16 18 C -0.08 -1.37 9.30 22.31 0.21 -1.16 16 19 C -0.10 -1.48 10.03 22.24 0.22 -1.26 16 20 C -0.08 -1.75 9.70 22.48 0.22 -1.53 16 21 C -0.03 -1.11 5.88 -20.04 -0.12 -1.23 16 22 C 0.21 7.44 7.94 137.38 1.09 8.53 16 23 N -0.31 -13.47 12.23 -52.18 -0.64 -14.11 16 24 N -0.07 -2.41 13.47 37.02 0.50 -1.92 16 25 N -0.20 -5.04 7.90 37.02 0.29 -4.74 16 26 H 0.49 6.56 8.96 -347.54 -3.12 3.45 16 27 N -0.28 -8.13 12.08 -52.13 -0.63 -8.76 16 28 C -0.09 -3.22 8.97 22.48 0.20 -3.02 16 29 C -0.14 -3.09 9.73 30.62 0.30 -2.79 16 30 C -0.12 -2.11 9.42 30.62 0.29 -1.82 16 31 H 0.06 2.51 7.51 -2.39 -0.02 2.49 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 37 H 0.08 2.31 5.38 -2.39 -0.01 2.29 16 38 H 0.17 1.34 5.94 -2.91 -0.02 1.32 16 39 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.15 2.64 7.88 -2.91 -0.02 2.62 16 41 H 0.08 3.85 7.15 -2.91 -0.02 3.83 16 42 H 0.13 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16 44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.15 1.29 6.10 -2.39 -0.01 1.28 16 Total: -1.00 -91.00 374.01 2.61 -88.39 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.13 Total: 12.13 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.37 Total: -3.75 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -2.45 Total: -116.75 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.87 Total: 51.40 kcal Total: -91.00 2.61 -88.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.059 kcal (2) G-P(sol) polarization free energy of solvation -90.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds