Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.46827 * 2 1 4 4 C 1.50701 * 109.47345 * 119.99709 * 2 1 3 5 5 H 1.07995 * 119.99774 * 93.15748 * 4 2 1 6 6 C 1.37880 * 120.00062 * 273.15972 * 4 2 1 7 7 N 1.31514 * 120.00089 * 183.86122 * 6 4 2 8 8 Si 1.86803 * 120.00006 * 3.85644 * 6 4 2 9 9 H 1.48500 * 109.47212 * 264.96862 * 8 6 4 10 10 H 1.48496 * 109.46886 * 24.97046 * 8 6 4 11 11 H 1.48504 * 109.46825 * 144.96722 * 8 6 4 12 12 N 1.46496 * 109.47642 * 240.00249 * 2 1 3 13 13 C 1.46505 * 119.99594 * 299.99868 * 12 2 1 14 14 C 1.34768 * 120.00624 * 119.99681 * 12 2 1 15 15 O 1.21280 * 119.99900 * 5.05927 * 14 12 2 16 16 C 1.50704 * 120.00357 * 185.06312 * 14 12 2 17 17 C 1.50692 * 115.54916 * 291.60744 * 16 14 12 18 18 C 1.38342 * 119.94361 * 147.55372 * 17 16 14 19 19 C 1.38292 * 120.23521 * 179.97438 * 18 17 16 20 20 C 1.38049 * 120.12136 * 0.03634 * 19 18 17 21 21 C 1.39275 * 119.88062 * 359.97438 * 20 19 18 22 22 C 1.48461 * 120.11690 * 180.02562 * 21 20 19 23 23 N 1.34054 * 126.67434 * 179.68908 * 22 21 20 24 24 N 1.28979 * 107.26907 * 179.83587 * 23 22 21 25 25 N 1.28733 * 108.94500 * 0.43514 * 24 23 22 26 26 H 0.96993 * 125.34732 * 179.75164 * 25 24 23 27 27 N 1.28881 * 109.31518 * 359.71926 * 25 24 23 28 28 C 1.38010 * 119.93967 * 327.27205 * 17 16 14 29 29 C 1.52997 * 117.49946 * 145.93365 * 16 14 12 30 30 C 1.53002 * 117.49580 * 77.27381 * 16 14 12 31 31 H 1.09005 * 109.46465 * 174.85830 * 1 2 3 32 32 H 1.08999 * 109.46867 * 294.85351 * 1 2 3 33 33 H 1.08992 * 109.47102 * 54.85992 * 1 2 3 34 34 H 0.97000 * 119.99682 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47108 * 94.09272 * 13 12 2 36 36 H 1.08997 * 109.47004 * 214.09643 * 13 12 2 37 37 H 1.08997 * 109.46992 * 334.09303 * 13 12 2 38 38 H 1.08001 * 119.87746 * 359.97122 * 18 17 16 39 39 H 1.08007 * 119.93410 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.06008 * 179.97438 * 20 19 18 41 41 H 1.07992 * 120.06099 * 0.02562 * 28 17 16 42 42 H 1.09003 * 117.49895 * 0.02562 * 29 16 14 43 43 H 1.08999 * 117.50208 * 145.02003 * 29 16 14 44 44 H 1.09001 * 117.49471 * 214.97707 * 30 16 14 45 45 H 1.09000 * 117.50312 * 0.02562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.2610 -1.7650 1.1896 6 6 2.2002 -0.0137 2.4085 7 7 2.7100 -0.6150 3.4612 8 14 1.7035 1.7842 2.5092 9 1 2.8883 2.6405 2.2483 10 1 0.6561 2.0659 1.4949 11 1 1.1711 2.0755 3.8646 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1620 1.0954 -1.8474 16 6 3.2014 -0.7086 -3.3685 17 6 4.1573 -1.8642 -3.2218 18 6 4.0950 -2.9280 -4.1041 19 6 4.9696 -3.9915 -3.9754 20 6 5.9096 -3.9970 -2.9644 21 6 5.9765 -2.9287 -2.0734 22 6 6.9857 -2.9289 -0.9845 23 7 7.1696 -1.9728 -0.0630 24 7 8.1379 -2.3557 0.6981 25 7 8.5671 -3.4973 0.2860 26 1 9.2938 -4.0008 0.6848 27 7 7.8790 -3.8665 -0.7393 28 6 5.0971 -1.8568 -2.2112 29 6 3.3414 0.1706 -4.6127 30 6 2.1580 -0.7919 -4.4845 31 1 -0.3632 -1.0236 -0.0921 32 1 -0.3633 0.4319 0.9325 33 1 -0.3633 0.5915 -0.8403 34 1 2.8283 -0.1248 4.2897 35 1 0.7784 -2.1445 -2.0605 36 1 2.4934 -2.6001 -1.9219 37 1 1.4586 -2.5784 -0.4739 38 1 3.3607 -2.9280 -4.8960 39 1 4.9170 -4.8193 -4.6671 40 1 6.5919 -4.8282 -2.8646 41 1 5.1476 -1.0240 -1.5256 42 1 3.1387 1.2359 -4.5017 43 1 4.1247 -0.0870 -5.3255 44 1 2.1634 -1.6825 -5.1129 45 1 1.1766 -0.3596 -4.2893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 153.961379 kcal Electronic energy + Delta-G solvation = -30234.940794 eV Core-core repulsion = 26256.997467 eV Total energy + Delta-G solvation = -3977.943327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.33134 -40.43403 -38.64383 -36.51082 -35.28479 -34.26403 -33.39353 -32.55197 -31.06748 -30.33539 -30.14000 -26.17958 -25.27530 -25.04029 -24.47977 -23.99470 -22.56475 -22.32842 -21.29174 -19.93522 -19.08618 -18.17651 -17.33151 -17.01988 -16.86980 -16.02386 -15.65720 -15.36556 -15.09924 -14.71900 -14.28714 -14.06725 -13.83242 -13.51725 -13.31421 -13.11385 -12.61468 -12.46591 -12.24949 -12.21503 -12.13913 -11.79668 -11.76313 -11.44302 -11.30228 -11.26447 -11.21513 -11.10927 -10.98294 -10.93142 -10.62066 -10.49930 -10.41073 -10.29444 -9.68743 -9.22954 -8.99831 -8.73553 -8.55044 -8.49660 -7.61467 -6.07352 -4.08081 0.72746 1.29105 1.34973 2.30614 2.43054 3.17782 3.34999 3.43741 3.48042 3.59411 3.75319 3.77376 4.09179 4.26910 4.45640 4.57431 4.80136 4.89964 4.99620 5.05715 5.07216 5.23902 5.32441 5.40616 5.51736 5.60196 5.62949 5.68905 5.86673 5.88327 5.93023 6.03706 6.05723 6.15545 6.30723 6.34465 6.43037 6.43480 6.45797 6.50086 6.55313 6.63059 6.86047 6.97381 7.12872 7.53217 7.70823 8.21285 8.27481 8.56119 8.92725 8.98819 9.55069 11.04942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008579 B = 0.005236 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.087126 B = 5346.301407 C = 7645.369822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.227 3.773 3 H 0.061 0.939 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.868 3.132 9 H -0.274 1.274 10 H -0.257 1.257 11 H -0.287 1.287 12 N -0.576 5.576 13 C 0.083 3.917 14 C 0.542 3.458 15 O -0.547 6.547 16 C -0.116 4.116 17 C -0.036 4.036 18 C -0.100 4.100 19 C -0.121 4.121 20 C -0.085 4.085 21 C -0.011 4.011 22 C 0.220 3.780 23 N -0.250 5.250 24 N -0.045 5.045 25 N -0.233 5.233 26 H 0.473 0.527 27 N -0.300 5.300 28 C -0.057 4.057 29 C -0.137 4.137 30 C -0.157 4.157 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -9.321 -16.413 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.562 4.562 5 H 0.095 0.905 6 C -0.123 4.123 7 N -0.528 5.528 8 Si 0.695 3.305 9 H -0.200 1.200 10 H -0.182 1.182 11 H -0.213 1.213 12 N -0.306 5.306 13 C -0.061 4.061 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.119 4.119 17 C -0.037 4.037 18 C -0.119 4.119 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.014 4.014 22 C -0.060 4.060 23 N -0.123 5.123 24 N -0.041 5.041 25 N -0.078 5.078 26 H 0.327 0.673 27 N -0.152 5.152 28 C -0.077 4.077 29 C -0.174 4.174 30 C -0.194 4.194 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.264 -8.447 -15.495 18.727 hybrid contribution 0.081 0.188 0.382 0.433 sum 6.345 -8.259 -15.113 18.354 Atomic orbital electron populations 1.22334 0.98588 1.00194 0.99752 1.19250 0.90403 0.94835 0.82921 0.92099 1.21071 1.44901 0.97736 0.92451 0.90499 1.24877 0.93848 0.97923 0.95654 1.69899 1.43411 1.37132 1.02390 0.87029 0.79981 0.86084 0.77454 1.19963 1.18156 1.21316 1.47990 1.48556 1.11618 1.22393 1.21690 0.99227 0.82942 1.02224 1.19162 0.78895 0.85796 0.83393 1.90656 1.55250 1.19307 1.77289 1.20167 1.01534 0.98953 0.91250 1.18623 0.95242 0.94038 0.95748 1.21168 0.98888 0.93018 0.98829 1.20956 0.95733 0.98697 0.98509 1.21115 0.98481 0.97109 0.93815 1.17151 0.94577 0.96714 0.92960 1.23667 0.96595 0.88048 0.97698 1.76288 1.09191 1.23617 1.03183 1.79009 1.07515 0.98035 1.19504 1.47726 1.26524 1.14839 1.18730 0.67336 1.74820 1.08436 1.25831 1.06084 1.21145 0.92161 0.97579 0.96791 1.23052 0.99974 0.97973 0.96390 1.23154 0.94695 1.02151 0.99401 0.93338 0.92278 0.95698 0.92572 0.93991 0.92140 0.90103 0.85233 0.85207 0.85081 0.84157 0.87540 0.87997 0.87691 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.76 37.16 0.33 -2.88 16 2 C 0.23 5.55 2.17 -69.08 -0.15 5.40 16 3 H 0.06 1.64 4.85 -51.92 -0.25 1.39 16 4 C -0.52 -14.69 8.68 -34.44 -0.30 -14.99 16 5 H 0.08 2.31 6.94 -52.49 -0.36 1.95 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 7 N -0.89 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.87 22.27 26.19 -169.99 -4.45 17.81 16 9 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.26 -6.22 5.66 56.52 0.32 -5.90 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 N -0.58 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.08 1.43 8.99 59.85 0.54 1.97 16 14 C 0.54 11.15 5.84 -10.99 -0.06 11.08 16 15 O -0.55 -13.41 16.11 5.56 0.09 -13.32 16 16 C -0.12 -1.75 1.46 -156.81 -0.23 -1.98 16 17 C -0.04 -0.51 3.28 -104.67 -0.34 -0.85 16 18 C -0.10 -1.07 9.29 -39.52 -0.37 -1.44 16 19 C -0.12 -1.19 10.03 -39.63 -0.40 -1.59 16 20 C -0.09 -1.00 9.70 -39.27 -0.38 -1.38 16 21 C -0.01 -0.16 5.88 -104.89 -0.62 -0.78 16 22 C 0.22 3.59 7.94 -156.30 -1.24 2.35 16 23 N -0.25 -4.72 12.23 32.16 0.39 -4.32 16 24 N -0.05 -0.72 13.47 60.35 0.81 0.09 16 25 N -0.23 -2.71 7.90 60.35 0.48 -2.23 16 26 H 0.47 2.87 8.96 -340.37 -3.05 -0.18 16 27 N -0.30 -4.05 12.08 32.17 0.39 -3.66 16 28 C -0.06 -0.95 8.88 -39.26 -0.35 -1.30 16 29 C -0.14 -1.71 9.76 -26.69 -0.26 -1.97 16 30 C -0.16 -1.76 9.55 -26.69 -0.25 -2.02 16 31 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 32 H 0.06 1.30 6.25 -51.93 -0.32 0.97 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.96 5.16 -51.93 -0.27 0.69 16 37 H 0.08 1.53 6.67 -51.93 -0.35 1.18 16 38 H 0.13 1.04 5.92 -52.49 -0.31 0.73 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.13 1.32 7.88 -52.49 -0.41 0.91 16 41 H 0.14 2.87 7.25 -52.49 -0.38 2.49 16 42 H 0.11 1.45 8.05 -51.93 -0.42 1.03 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 0.87 6.07 -51.93 -0.32 0.56 16 45 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -36.56 370.68 -8.76 -45.32 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.16 Total: 2.19 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -4.19 Total: -8.11 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 2.36 Total: -49.48 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.45 Total: 17.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.56 -8.76 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.279 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds