Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.46827 * 2 1 4 4 C 1.50701 * 109.47345 * 119.99709 * 2 1 3 5 5 H 1.07995 * 119.99774 * 93.15748 * 4 2 1 6 6 C 1.37880 * 120.00062 * 273.15972 * 4 2 1 7 7 N 1.31514 * 120.00089 * 183.86122 * 6 4 2 8 8 Si 1.86803 * 120.00006 * 3.85644 * 6 4 2 9 9 H 1.48500 * 109.47212 * 264.96862 * 8 6 4 10 10 H 1.48496 * 109.46886 * 24.97046 * 8 6 4 11 11 H 1.48504 * 109.46825 * 144.96722 * 8 6 4 12 12 N 1.46496 * 109.47642 * 240.00249 * 2 1 3 13 13 C 1.46505 * 119.99594 * 299.99868 * 12 2 1 14 14 C 1.34768 * 120.00624 * 119.99681 * 12 2 1 15 15 O 1.21280 * 119.99900 * 5.05927 * 14 12 2 16 16 C 1.50704 * 120.00357 * 185.06312 * 14 12 2 17 17 C 1.50692 * 115.54916 * 291.60744 * 16 14 12 18 18 C 1.38342 * 119.94361 * 147.55372 * 17 16 14 19 19 C 1.38292 * 120.23521 * 179.97438 * 18 17 16 20 20 C 1.38049 * 120.12136 * 0.03634 * 19 18 17 21 21 C 1.39275 * 119.88062 * 359.97438 * 20 19 18 22 22 C 1.48461 * 120.11690 * 180.02562 * 21 20 19 23 23 N 1.34054 * 126.67434 * 179.68908 * 22 21 20 24 24 N 1.28979 * 107.26907 * 179.83587 * 23 22 21 25 25 N 1.28733 * 108.94500 * 0.43514 * 24 23 22 26 26 H 0.96993 * 125.34732 * 179.75164 * 25 24 23 27 27 N 1.28881 * 109.31518 * 359.71926 * 25 24 23 28 28 C 1.38010 * 119.93967 * 327.27205 * 17 16 14 29 29 C 1.52997 * 117.49946 * 145.93365 * 16 14 12 30 30 C 1.53002 * 117.49580 * 77.27381 * 16 14 12 31 31 H 1.09005 * 109.46465 * 174.85830 * 1 2 3 32 32 H 1.08999 * 109.46867 * 294.85351 * 1 2 3 33 33 H 1.08992 * 109.47102 * 54.85992 * 1 2 3 34 34 H 0.97000 * 119.99682 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47108 * 94.09272 * 13 12 2 36 36 H 1.08997 * 109.47004 * 214.09643 * 13 12 2 37 37 H 1.08997 * 109.46992 * 334.09303 * 13 12 2 38 38 H 1.08001 * 119.87746 * 359.97122 * 18 17 16 39 39 H 1.08007 * 119.93410 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.06008 * 179.97438 * 20 19 18 41 41 H 1.07992 * 120.06099 * 0.02562 * 28 17 16 42 42 H 1.09003 * 117.49895 * 0.02562 * 29 16 14 43 43 H 1.08999 * 117.50208 * 145.02003 * 29 16 14 44 44 H 1.09001 * 117.49471 * 214.97707 * 30 16 14 45 45 H 1.09000 * 117.50312 * 0.02562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.2610 -1.7650 1.1896 6 6 2.2002 -0.0137 2.4085 7 7 2.7100 -0.6150 3.4612 8 14 1.7035 1.7842 2.5092 9 1 2.8883 2.6405 2.2483 10 1 0.6561 2.0659 1.4949 11 1 1.1711 2.0755 3.8646 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1620 1.0954 -1.8474 16 6 3.2014 -0.7086 -3.3685 17 6 4.1573 -1.8642 -3.2218 18 6 4.0950 -2.9280 -4.1041 19 6 4.9696 -3.9915 -3.9754 20 6 5.9096 -3.9970 -2.9644 21 6 5.9765 -2.9287 -2.0734 22 6 6.9857 -2.9289 -0.9845 23 7 7.1696 -1.9728 -0.0630 24 7 8.1379 -2.3557 0.6981 25 7 8.5671 -3.4973 0.2860 26 1 9.2938 -4.0008 0.6848 27 7 7.8790 -3.8665 -0.7393 28 6 5.0971 -1.8568 -2.2112 29 6 3.3414 0.1706 -4.6127 30 6 2.1580 -0.7919 -4.4845 31 1 -0.3632 -1.0236 -0.0921 32 1 -0.3633 0.4319 0.9325 33 1 -0.3633 0.5915 -0.8403 34 1 2.8283 -0.1248 4.2897 35 1 0.7784 -2.1445 -2.0605 36 1 2.4934 -2.6001 -1.9219 37 1 1.4586 -2.5784 -0.4739 38 1 3.3607 -2.9280 -4.8960 39 1 4.9170 -4.8193 -4.6671 40 1 6.5919 -4.8282 -2.8646 41 1 5.1476 -1.0240 -1.5256 42 1 3.1387 1.2359 -4.5017 43 1 4.1247 -0.0870 -5.3255 44 1 2.1634 -1.6825 -5.1129 45 1 1.1766 -0.3596 -4.2893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 127.282065 kcal Electronic energy + Delta-G solvation = -30236.097696 eV Core-core repulsion = 26256.997467 eV Total energy + Delta-G solvation = -3979.100229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.51370 -41.67285 -39.92769 -37.77108 -36.98294 -35.45727 -34.65873 -34.52094 -32.34040 -31.79134 -31.28957 -27.67652 -27.24433 -26.28617 -25.67543 -25.26877 -23.57666 -23.44783 -22.49887 -21.43950 -20.22103 -19.62480 -19.08733 -18.36908 -18.20040 -17.51984 -17.20793 -16.43907 -16.37829 -16.17351 -15.64718 -15.44636 -15.04829 -14.99110 -14.54915 -14.48294 -14.22538 -14.12302 -13.76510 -13.72220 -13.39908 -13.30242 -13.16143 -12.96227 -12.72435 -12.59268 -12.48272 -12.38740 -12.25951 -12.20753 -12.13423 -12.02445 -11.73105 -11.50422 -11.44120 -11.27173 -10.82838 -10.58510 -9.75238 -9.49901 -9.33243 -8.36643 -6.39565 -0.31048 0.13120 0.35581 1.24094 1.28918 1.31288 1.38738 1.39050 1.68631 2.24621 2.29172 2.59330 2.67243 3.01382 3.06136 3.14487 3.54139 3.63090 3.87625 4.03822 4.08748 4.11859 4.21367 4.36375 4.39494 4.44622 4.46381 4.63278 4.65266 4.73020 4.76124 4.77481 4.83632 4.95470 5.00170 5.02731 5.07898 5.13399 5.26354 5.34285 5.46482 5.48223 5.55290 5.56442 5.59957 5.80682 5.95854 6.16349 6.63745 6.76520 7.07075 7.23409 7.39096 8.79317 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008579 B = 0.005236 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.087126 B = 5346.301407 C = 7645.369822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.226 3.774 3 H 0.031 0.969 4 C -0.516 4.516 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.938 5.938 8 Si 0.922 3.078 9 H -0.292 1.292 10 H -0.232 1.232 11 H -0.273 1.273 12 N -0.585 5.585 13 C 0.085 3.915 14 C 0.533 3.467 15 O -0.603 6.603 16 C -0.141 4.141 17 C -0.040 4.040 18 C -0.082 4.082 19 C -0.100 4.100 20 C -0.080 4.080 21 C -0.034 4.034 22 C 0.205 3.795 23 N -0.311 5.311 24 N -0.065 5.065 25 N -0.197 5.197 26 H 0.495 0.505 27 N -0.283 5.283 28 C -0.091 4.091 29 C -0.137 4.137 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.152 0.848 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -11.996 -20.939 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.123 3.877 3 H 0.049 0.951 4 C -0.555 4.555 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.747 3.253 9 H -0.219 1.219 10 H -0.155 1.155 11 H -0.198 1.198 12 N -0.313 5.313 13 C -0.058 4.058 14 C 0.322 3.678 15 O -0.485 6.485 16 C -0.144 4.144 17 C -0.041 4.041 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.100 4.100 21 C -0.037 4.037 22 C -0.074 4.074 23 N -0.183 5.183 24 N -0.060 5.060 25 N -0.049 5.049 26 H 0.354 0.646 27 N -0.136 5.136 28 C -0.112 4.112 29 C -0.174 4.174 30 C -0.155 4.155 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.191 0.809 39 H 0.197 0.803 40 H 0.168 0.832 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.147 0.853 44 H 0.169 0.831 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.764 -11.154 -20.030 23.416 hybrid contribution 0.686 0.883 1.742 2.070 sum 5.450 -10.270 -18.288 21.671 Atomic orbital electron populations 1.22151 0.95511 1.01824 1.00355 1.19015 0.92608 0.93069 0.82975 0.95080 1.21317 1.43674 0.96456 0.94054 0.93785 1.25655 0.94321 1.02018 0.95538 1.70025 1.45761 1.38877 1.03141 0.86164 0.79635 0.80875 0.78641 1.21913 1.15498 1.19846 1.47977 1.48841 1.13057 1.21462 1.21837 1.01509 0.80578 1.01844 1.20157 0.77301 0.85302 0.85024 1.90607 1.56929 1.22101 1.78898 1.19990 1.04831 1.00429 0.89151 1.18609 0.94390 0.94999 0.96083 1.21573 0.99229 0.91102 0.98158 1.21509 0.93398 0.99272 0.97541 1.21424 0.99238 0.96078 0.93240 1.17359 0.94614 0.97793 0.93922 1.24104 0.97491 0.87911 0.97921 1.76267 1.11010 1.25931 1.05088 1.78909 1.07741 0.99503 1.19836 1.47795 1.25856 1.13686 1.17519 0.64576 1.74773 1.07866 1.24784 1.06154 1.20822 0.95224 0.97097 0.98021 1.23169 1.01951 0.97132 0.95119 1.23406 0.93428 1.02807 0.95899 0.91521 0.93050 0.93315 0.92548 0.89894 0.90591 0.92549 0.80880 0.80333 0.83188 0.90105 0.89665 0.85304 0.83063 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.76 71.98 0.63 -5.20 16 2 C 0.23 11.38 2.17 44.25 0.10 11.47 16 3 H 0.03 1.75 4.85 -2.38 -0.01 1.74 16 4 C -0.52 -30.56 8.68 25.60 0.22 -30.34 16 5 H 0.04 2.83 6.94 -2.91 -0.02 2.81 16 6 C 0.02 1.44 5.47 84.66 0.46 1.90 16 7 N -0.94 -61.18 13.96 21.45 0.30 -60.89 16 8 Si 0.92 47.94 26.19 68.60 1.80 49.73 16 9 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 10 H -0.23 -10.99 5.66 99.48 0.56 -10.43 16 11 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 12 N -0.58 -25.07 2.75 -826.80 -2.28 -27.34 16 13 C 0.08 2.84 8.99 127.77 1.15 3.99 16 14 C 0.53 22.62 5.84 87.66 0.51 23.13 16 15 O -0.60 -31.58 16.11 -3.03 -0.05 -31.63 16 16 C -0.14 -4.05 1.46 -53.68 -0.08 -4.13 16 17 C -0.04 -1.07 3.28 -19.90 -0.07 -1.14 16 18 C -0.08 -1.30 9.29 22.31 0.21 -1.10 16 19 C -0.10 -1.38 10.03 22.24 0.22 -1.15 16 20 C -0.08 -1.63 9.70 22.47 0.22 -1.42 16 21 C -0.03 -1.03 5.88 -20.04 -0.12 -1.15 16 22 C 0.21 7.06 7.94 137.38 1.09 8.15 16 23 N -0.31 -12.84 12.23 -52.18 -0.64 -13.48 16 24 N -0.06 -2.21 13.47 37.02 0.50 -1.71 16 25 N -0.20 -4.65 7.90 37.02 0.29 -4.35 16 26 H 0.49 5.70 8.96 -347.54 -3.12 2.58 16 27 N -0.28 -7.62 12.08 -52.13 -0.63 -8.25 16 28 C -0.09 -3.20 8.88 22.48 0.20 -3.00 16 29 C -0.14 -3.10 9.76 30.62 0.30 -2.80 16 30 C -0.12 -2.09 9.55 30.62 0.29 -1.80 16 31 H 0.07 2.50 7.50 -2.38 -0.02 2.48 16 32 H 0.05 2.19 6.25 -2.39 -0.01 2.18 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.30 5.16 -2.39 -0.01 2.29 16 37 H 0.06 2.16 6.67 -2.39 -0.02 2.14 16 38 H 0.17 1.25 5.92 -2.91 -0.02 1.24 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.15 2.46 7.88 -2.91 -0.02 2.44 16 41 H 0.08 3.76 7.25 -2.91 -0.02 3.74 16 42 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 43 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.15 1.27 6.07 -2.39 -0.01 1.26 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -91.92 370.68 2.44 -89.49 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -2.20 Total: 13.03 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.34 Total: -4.59 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -2.45 Total: -116.02 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.05 Total: -31.63 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.80 Total: 49.73 kcal Total: -91.92 2.44 -89.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.768 kcal (2) G-P(sol) polarization free energy of solvation -91.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds