Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46506 * 109.47094 * 240.00251 * 2 1 3 13 13 C 1.46501 * 119.99868 * 300.00162 * 12 2 1 14 14 C 1.34773 * 120.00003 * 119.99887 * 12 2 1 15 15 O 1.21273 * 120.00344 * 0.02562 * 14 12 2 16 16 C 1.50707 * 119.99734 * 180.02562 * 14 12 2 17 17 H 1.08998 * 115.54793 * 34.32663 * 16 14 12 18 18 C 1.53006 * 117.49560 * 248.62186 * 16 14 12 19 19 C 1.52997 * 117.49530 * 180.02562 * 16 14 12 20 20 H 1.08990 * 117.50434 * 359.97438 * 19 16 14 21 21 C 1.50708 * 117.49244 * 214.97453 * 19 16 14 22 22 C 1.38333 * 119.94122 * 299.99803 * 21 19 16 23 23 C 1.38297 * 120.23285 * 180.02562 * 22 21 19 24 24 C 1.38054 * 120.12192 * 359.97438 * 23 22 21 25 25 C 1.39282 * 119.87494 * 359.97438 * 24 23 22 26 26 C 1.48459 * 120.11252 * 180.02562 * 25 24 23 27 27 N 1.34053 * 126.67648 * 180.02562 * 26 25 24 28 28 N 1.28977 * 107.27325 * 179.97438 * 27 26 25 29 29 N 1.28735 * 108.94235 * 359.97438 * 28 27 26 30 30 H 0.97003 * 125.34128 * 179.97438 * 29 28 27 31 31 N 1.28873 * 109.31807 * 359.76857 * 29 28 27 32 32 C 1.38007 * 119.93728 * 119.72430 * 21 19 16 33 33 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 35 35 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 36 36 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47148 * 89.99350 * 13 12 2 38 38 H 1.09000 * 109.47208 * 210.00010 * 13 12 2 39 39 H 1.09008 * 109.46852 * 329.99810 * 13 12 2 40 40 H 1.08999 * 117.49413 * 359.97438 * 18 16 14 41 41 H 1.09002 * 117.49589 * 145.01888 * 18 16 14 42 42 H 1.07995 * 119.88268 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.93565 * 179.97438 * 23 22 21 44 44 H 1.07990 * 120.05877 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.05985 * 359.97438 * 32 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1254 -1.8913 16 6 3.2949 -0.7458 -3.3142 17 1 2.6157 -1.4838 -3.7409 18 6 4.7955 -1.0318 -3.4023 19 6 4.1707 0.0520 -4.2824 20 1 4.3835 1.0905 -4.0295 21 6 4.0282 -0.2428 -5.7535 22 6 4.2873 -1.5150 -6.2310 23 6 4.1589 -1.7920 -7.5799 24 6 3.7708 -0.7993 -8.4572 25 6 3.5077 0.4831 -7.9814 26 6 3.0893 1.5545 -8.9201 27 7 2.8051 2.8267 -8.6076 28 7 2.4862 3.4281 -9.7031 29 7 2.5601 2.5894 -10.6770 30 1 2.3696 2.7907 -11.6066 31 7 2.9312 1.4414 -10.2238 32 6 3.6341 0.7556 -6.6210 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3634 0.5139 -0.8900 36 1 0.7082 1.1608 3.4845 37 1 0.7374 -2.1443 -1.9994 38 1 2.4627 -2.5819 -1.9865 39 1 1.5294 -2.5969 -0.4709 40 1 5.4196 -0.7059 -2.5703 41 1 5.1036 -1.9583 -3.8870 42 1 4.5908 -2.2946 -5.5481 43 1 4.3628 -2.7868 -7.9475 44 1 3.6713 -1.0166 -9.5103 45 1 3.4274 1.7472 -6.2464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 143.017329 kcal Electronic energy + Delta-G solvation = -28212.532354 eV Core-core repulsion = 24234.114458 eV Total energy + Delta-G solvation = -3978.417897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72123 -40.13897 -38.98555 -36.54763 -35.13117 -34.62577 -33.71626 -32.78559 -31.19795 -30.54806 -29.38477 -26.07310 -25.26521 -25.21119 -24.79258 -24.20362 -23.23660 -22.26090 -20.74723 -20.12048 -19.34303 -18.20788 -17.43102 -17.40850 -16.61793 -16.13853 -15.69694 -15.56276 -15.11421 -14.70832 -14.47274 -14.25509 -14.03099 -13.71794 -13.36290 -13.20562 -12.67240 -12.59645 -12.42210 -12.14183 -11.94725 -11.77823 -11.66500 -11.62811 -11.49011 -11.39125 -11.31942 -11.06555 -11.01070 -10.85987 -10.74271 -10.50594 -10.33487 -10.21517 -10.14177 -9.17285 -8.98694 -8.96592 -8.65547 -8.40298 -7.55145 -6.05382 -4.13362 0.45458 0.93135 1.12954 1.94518 2.10058 3.13053 3.28155 3.34644 3.36056 3.39668 3.53371 3.88013 3.96215 4.19501 4.40177 4.57397 4.69072 4.83348 4.89716 4.94318 5.02082 5.11990 5.19772 5.21589 5.25741 5.39160 5.41002 5.66282 5.73378 5.79732 5.83093 6.04359 6.07322 6.08583 6.11493 6.19211 6.24032 6.41073 6.48341 6.66912 6.78852 6.87443 7.09832 7.46256 7.56765 7.74139 7.87350 8.04480 8.22557 8.56973 8.85481 9.09767 9.53022 10.99909 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.002143 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.178191 B =13063.648263 C =13857.514222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.085 3.915 14 C 0.531 3.469 15 O -0.551 6.551 16 C -0.168 4.168 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.093 4.093 20 H 0.129 0.871 21 C -0.045 4.045 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.087 4.087 25 C -0.020 4.020 26 C 0.224 3.776 27 N -0.264 5.264 28 N -0.048 5.048 29 N -0.230 5.230 30 H 0.475 0.525 31 N -0.297 5.297 32 C -0.064 4.064 33 H 0.029 0.971 34 H 0.093 0.907 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -5.583 -26.078 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.059 4.059 14 C 0.318 3.682 15 O -0.431 6.431 16 C -0.189 4.189 17 H 0.138 0.862 18 C -0.182 4.182 19 C -0.112 4.112 20 H 0.147 0.853 21 C -0.045 4.045 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.107 4.107 25 C -0.024 4.024 26 C -0.056 4.056 27 N -0.137 5.137 28 N -0.044 5.044 29 N -0.076 5.076 30 H 0.329 0.671 31 N -0.149 5.149 32 C -0.085 4.085 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.808 -4.223 -25.960 26.737 hybrid contribution 0.108 -0.883 0.314 0.943 sum 4.917 -5.105 -25.646 26.608 Atomic orbital electron populations 1.22079 0.98199 0.99384 1.00802 1.18946 0.90889 0.94525 0.79897 0.91928 1.21314 1.31628 1.13140 0.90274 0.92232 1.24906 0.94984 0.94999 0.98972 1.69884 1.36298 1.22620 1.23728 0.86494 0.78635 0.79838 0.82395 1.20626 1.21154 1.19934 1.48141 1.48775 1.11641 1.23340 1.21594 0.98724 0.83332 1.02290 1.19411 0.79129 0.86503 0.83181 1.90645 1.58674 1.17014 1.76731 1.22469 0.95240 1.03349 0.97831 0.86168 1.23085 0.93406 0.99655 1.02056 1.21055 1.03686 0.99214 0.87241 0.85270 1.19096 0.98563 0.93181 0.93660 1.21299 0.98256 0.96447 0.95717 1.21030 1.00432 0.99235 0.93059 1.21110 0.97940 0.91312 1.00325 1.17171 1.04548 0.89976 0.90661 1.23732 1.00787 0.92771 0.88322 1.76159 1.15531 1.04656 1.17342 1.78952 1.15112 1.19201 0.91107 1.47737 1.42773 1.03847 1.13208 0.67114 1.74899 1.19860 1.07760 1.12356 1.21044 0.96251 1.00325 0.90837 0.95177 0.88853 0.97008 0.92693 0.94045 0.92637 0.90149 0.87581 0.87794 0.85145 0.85188 0.85157 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.15 0.33 -3.22 16 2 C 0.26 6.64 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.17 7.98 -34.44 -0.27 -14.45 16 5 H 0.06 1.57 7.34 -52.48 -0.39 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.59 -12.63 2.75 -175.26 -0.48 -13.12 16 13 C 0.08 1.42 9.00 59.85 0.54 1.96 16 14 C 0.53 11.01 7.46 -10.98 -0.08 10.93 16 15 O -0.55 -13.66 15.59 5.56 0.09 -13.58 16 16 C -0.17 -2.48 4.43 -91.77 -0.41 -2.88 16 17 H 0.12 1.53 7.26 -51.93 -0.38 1.16 16 18 C -0.14 -1.76 9.56 -26.75 -0.26 -2.02 16 19 C -0.09 -1.24 5.55 -91.79 -0.51 -1.75 16 20 H 0.13 1.95 7.67 -51.93 -0.40 1.55 16 21 C -0.04 -0.51 5.61 -104.67 -0.59 -1.10 16 22 C -0.10 -0.90 9.29 -39.52 -0.37 -1.27 16 23 C -0.12 -0.96 10.03 -39.63 -0.40 -1.36 16 24 C -0.09 -0.78 9.70 -39.26 -0.38 -1.16 16 25 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 26 C 0.22 2.56 7.94 -156.30 -1.24 1.32 16 27 N -0.26 -3.35 12.23 32.16 0.39 -2.95 16 28 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 29 N -0.23 -1.63 7.90 60.35 0.48 -1.15 16 30 H 0.47 0.93 8.96 -340.36 -3.05 -2.12 16 31 N -0.30 -2.79 12.08 32.17 0.39 -2.40 16 32 C -0.06 -0.77 9.39 -39.26 -0.37 -1.13 16 33 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.75 6.64 -51.93 -0.34 0.41 16 39 H 0.08 1.43 7.02 -51.92 -0.36 1.07 16 40 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.10 0.93 6.17 -51.93 -0.32 0.61 16 42 H 0.13 0.96 6.01 -52.49 -0.32 0.65 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.98 7.88 -52.49 -0.41 0.56 16 45 H 0.14 1.74 7.89 -52.49 -0.41 1.33 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -34.28 379.21 -10.18 -44.46 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.28 Total: 0.18 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.89 Total: -8.86 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 2.22 Total: -43.92 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.28 -10.18 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.476 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds