Wall clock time and date at job start Sat Apr 11 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46506 * 109.47094 * 240.00251 * 2 1 3 13 13 C 1.46501 * 119.99868 * 300.00162 * 12 2 1 14 14 C 1.34773 * 120.00003 * 119.99887 * 12 2 1 15 15 O 1.21273 * 120.00344 * 0.02562 * 14 12 2 16 16 C 1.50707 * 119.99734 * 180.02562 * 14 12 2 17 17 H 1.08998 * 115.54793 * 34.32663 * 16 14 12 18 18 C 1.53006 * 117.49560 * 248.62186 * 16 14 12 19 19 C 1.52997 * 117.49530 * 180.02562 * 16 14 12 20 20 H 1.08990 * 117.50434 * 359.97438 * 19 16 14 21 21 C 1.50708 * 117.49244 * 214.97453 * 19 16 14 22 22 C 1.38333 * 119.94122 * 299.99803 * 21 19 16 23 23 C 1.38297 * 120.23285 * 180.02562 * 22 21 19 24 24 C 1.38054 * 120.12192 * 359.97438 * 23 22 21 25 25 C 1.39282 * 119.87494 * 359.97438 * 24 23 22 26 26 C 1.48459 * 120.11252 * 180.02562 * 25 24 23 27 27 N 1.34053 * 126.67648 * 180.02562 * 26 25 24 28 28 N 1.28977 * 107.27325 * 179.97438 * 27 26 25 29 29 N 1.28735 * 108.94235 * 359.97438 * 28 27 26 30 30 H 0.97003 * 125.34128 * 179.97438 * 29 28 27 31 31 N 1.28873 * 109.31807 * 359.76857 * 29 28 27 32 32 C 1.38007 * 119.93728 * 119.72430 * 21 19 16 33 33 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 35 35 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 36 36 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47148 * 89.99350 * 13 12 2 38 38 H 1.09000 * 109.47208 * 210.00010 * 13 12 2 39 39 H 1.09008 * 109.46852 * 329.99810 * 13 12 2 40 40 H 1.08999 * 117.49413 * 359.97438 * 18 16 14 41 41 H 1.09002 * 117.49589 * 145.01888 * 18 16 14 42 42 H 1.07995 * 119.88268 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.93565 * 179.97438 * 23 22 21 44 44 H 1.07990 * 120.05877 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.05985 * 359.97438 * 32 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0865 1.1254 -1.8913 16 6 3.2949 -0.7458 -3.3142 17 1 2.6157 -1.4838 -3.7409 18 6 4.7955 -1.0318 -3.4023 19 6 4.1707 0.0520 -4.2824 20 1 4.3835 1.0905 -4.0295 21 6 4.0282 -0.2428 -5.7535 22 6 4.2873 -1.5150 -6.2310 23 6 4.1589 -1.7920 -7.5799 24 6 3.7708 -0.7993 -8.4572 25 6 3.5077 0.4831 -7.9814 26 6 3.0893 1.5545 -8.9201 27 7 2.8051 2.8267 -8.6076 28 7 2.4862 3.4281 -9.7031 29 7 2.5601 2.5894 -10.6770 30 1 2.3696 2.7907 -11.6066 31 7 2.9312 1.4414 -10.2238 32 6 3.6341 0.7556 -6.6210 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 -0.3634 0.5139 -0.8900 36 1 0.7082 1.1608 3.4845 37 1 0.7374 -2.1443 -1.9994 38 1 2.4627 -2.5819 -1.9865 39 1 1.5294 -2.5969 -0.4709 40 1 5.4196 -0.7059 -2.5703 41 1 5.1036 -1.9583 -3.8870 42 1 4.5908 -2.2946 -5.5481 43 1 4.3628 -2.7868 -7.9475 44 1 3.6713 -1.0166 -9.5103 45 1 3.4274 1.7472 -6.2464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:59 Heat of formation + Delta-G solvation = 121.028524 kcal Electronic energy + Delta-G solvation = -28213.485860 eV Core-core repulsion = 24234.114458 eV Total energy + Delta-G solvation = -3979.371403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.48622 -41.28286 -40.19295 -37.80053 -36.82981 -35.41681 -34.76441 -34.47740 -32.01217 -31.55088 -31.04857 -27.54473 -27.31369 -26.04423 -25.73366 -25.40630 -24.16455 -23.02847 -22.33744 -21.10376 -20.12188 -19.71450 -18.64492 -18.27514 -18.16908 -17.50873 -17.23018 -16.49358 -16.35724 -16.10166 -15.85362 -15.38456 -15.05041 -14.79788 -14.49895 -14.34364 -14.09345 -13.91642 -13.53213 -13.52677 -13.38873 -13.04715 -12.89151 -12.84062 -12.74583 -12.64429 -12.49014 -12.45857 -12.27298 -12.19404 -12.13445 -12.08521 -11.84570 -11.45182 -11.43717 -11.18957 -10.66271 -10.46733 -9.72752 -9.49366 -9.30112 -8.13606 -6.30442 -0.28272 0.15694 0.37241 1.30352 1.41040 1.42275 1.43750 1.53803 1.69384 2.29635 2.48809 2.63853 2.73477 3.10286 3.14164 3.16820 3.55636 3.76812 3.91059 3.96300 4.10672 4.14774 4.22299 4.29022 4.40269 4.44864 4.54638 4.66877 4.72982 4.77667 4.80594 4.89013 4.96009 5.03065 5.06266 5.08643 5.09217 5.18173 5.46304 5.48163 5.50159 5.60710 5.61590 5.66292 5.68608 5.97263 6.04935 6.17132 6.77833 6.86626 7.09224 7.33407 7.50983 8.90985 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.002143 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.178191 B =13063.648263 C =13857.514222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.598 5.598 13 C 0.080 3.920 14 C 0.518 3.482 15 O -0.609 6.609 16 C -0.174 4.174 17 H 0.153 0.847 18 C -0.119 4.119 19 C -0.093 4.093 20 H 0.094 0.906 21 C -0.055 4.055 22 C -0.091 4.091 23 C -0.107 4.107 24 C -0.081 4.081 25 C -0.034 4.034 26 C 0.210 3.790 27 N -0.304 5.304 28 N -0.060 5.060 29 N -0.199 5.199 30 H 0.495 0.505 31 N -0.289 5.289 32 C -0.085 4.085 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.148 0.852 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -9.941 -28.334 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.182 1.182 12 N -0.327 5.327 13 C -0.062 4.062 14 C 0.308 3.692 15 O -0.493 6.493 16 C -0.195 4.195 17 H 0.170 0.830 18 C -0.156 4.156 19 C -0.112 4.112 20 H 0.112 0.888 21 C -0.055 4.055 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.101 4.101 25 C -0.037 4.037 26 C -0.070 4.070 27 N -0.176 5.176 28 N -0.055 5.055 29 N -0.050 5.050 30 H 0.354 0.646 31 N -0.142 5.142 32 C -0.106 4.106 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.186 0.814 44 H 0.166 0.834 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.705 -8.609 -28.257 30.085 hybrid contribution -0.175 0.547 0.872 1.044 sum 5.529 -8.061 -27.385 29.077 Atomic orbital electron populations 1.21865 0.97283 1.00133 0.99729 1.18531 0.91559 0.92140 0.81984 0.97788 1.21571 1.31632 1.13206 0.90930 0.91747 1.25807 0.95129 0.95689 1.02223 1.70041 1.37391 1.24041 1.24395 0.85415 0.77678 0.79330 0.78349 1.20870 1.20707 1.18200 1.48164 1.48820 1.13538 1.22164 1.21863 1.01284 0.80391 1.02634 1.20484 0.78098 0.86125 0.84521 1.90612 1.60544 1.19816 1.78293 1.22366 0.97310 1.04308 0.95470 0.82984 1.23263 0.90615 1.00805 1.00883 1.20907 1.03472 0.98004 0.88815 0.88766 1.18943 1.00175 0.94422 0.91957 1.21571 0.96977 0.95519 0.96826 1.21445 0.98396 1.00428 0.92230 1.21398 0.96798 0.90420 1.01530 1.17302 1.05341 0.90975 0.90097 1.23943 1.01288 0.92659 0.89095 1.76147 1.17141 1.05751 1.18603 1.78882 1.15691 1.19580 0.91344 1.47807 1.40469 1.02865 1.13860 0.64583 1.74852 1.19677 1.08213 1.11426 1.20941 0.97957 0.99780 0.91896 0.93273 0.91439 0.96533 0.92699 0.91968 0.88587 0.91289 0.89309 0.82987 0.82351 0.81405 0.83408 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.97 71.98 0.65 -5.94 16 2 C 0.26 13.98 2.64 44.24 0.12 14.10 16 3 H 0.00 0.27 6.90 -2.39 -0.02 0.25 16 4 C -0.53 -29.42 7.98 25.60 0.20 -29.21 16 5 H 0.06 3.39 7.34 -2.91 -0.02 3.37 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.60 -25.90 2.75 -826.80 -2.28 -28.18 16 13 C 0.08 2.51 9.00 127.77 1.15 3.66 16 14 C 0.52 22.12 7.46 87.66 0.65 22.77 16 15 O -0.61 -32.56 15.59 -3.01 -0.05 -32.61 16 16 C -0.17 -4.89 4.43 -11.54 -0.05 -4.94 16 17 H 0.15 3.29 7.26 -2.39 -0.02 3.28 16 18 C -0.12 -2.59 9.56 30.58 0.29 -2.30 16 19 C -0.09 -2.47 5.55 -11.55 -0.06 -2.53 16 20 H 0.09 3.14 7.67 -2.39 -0.02 3.13 16 21 C -0.05 -1.18 5.61 -19.89 -0.11 -1.29 16 22 C -0.09 -1.26 9.29 22.31 0.21 -1.06 16 23 C -0.11 -1.20 10.03 22.24 0.22 -0.98 16 24 C -0.08 -1.21 9.70 22.48 0.22 -0.99 16 25 C -0.03 -0.72 5.88 -20.04 -0.12 -0.84 16 26 C 0.21 4.79 7.94 137.38 1.09 5.88 16 27 N -0.30 -8.04 12.23 -52.18 -0.64 -8.68 16 28 N -0.06 -1.25 13.47 37.02 0.50 -0.75 16 29 N -0.20 -2.60 7.90 37.02 0.29 -2.31 16 30 H 0.49 1.09 8.96 -347.53 -3.12 -2.02 16 31 N -0.29 -5.03 12.08 -52.13 -0.63 -5.66 16 32 C -0.09 -2.09 9.39 22.48 0.21 -1.88 16 33 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 34 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 35 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 2.20 6.64 -2.39 -0.02 2.19 16 39 H 0.07 2.32 7.02 -2.38 -0.02 2.30 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.15 1.85 6.17 -2.39 -0.01 1.84 16 42 H 0.16 1.29 6.01 -2.91 -0.02 1.28 16 43 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 44 H 0.15 1.66 7.88 -2.92 -0.02 1.63 16 45 H 0.11 3.23 7.89 -2.91 -0.02 3.21 16 Total: -1.00 -81.87 379.21 2.52 -79.34 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -2.06 Total: 11.92 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.12 Total: -4.52 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -2.51 Total: -99.50 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -81.87 2.52 -79.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.373 kcal (2) G-P(sol) polarization free energy of solvation -81.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds