Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46817 * 2 1 4 4 C 1.52997 * 109.46928 * 119.99421 * 2 1 3 5 5 C 1.50698 * 109.47399 * 295.00610 * 4 2 1 6 6 C 1.38314 * 119.88456 * 89.99783 * 5 4 2 7 7 C 1.38030 * 120.11948 * 180.25408 * 6 5 4 8 8 C 1.39305 * 119.87920 * 359.51492 * 7 6 5 9 9 C 1.48455 * 120.11614 * 180.22913 * 8 7 6 10 10 N 1.34048 * 126.67457 * 180.29756 * 9 8 7 11 11 N 1.28992 * 107.26837 * 180.02562 * 10 9 8 12 12 N 1.28726 * 108.94143 * 0.02562 * 11 10 9 13 13 H 0.97004 * 125.33982 * 179.97438 * 12 11 10 14 14 N 1.28870 * 109.32052 * 359.72515 * 12 11 10 15 15 C 1.39299 * 119.76582 * 0.50929 * 8 7 6 16 16 C 1.38029 * 119.88115 * 359.72107 * 15 8 7 17 17 C 1.50694 * 109.47381 * 240.00150 * 2 1 3 18 18 O 1.21282 * 119.99671 * 271.79778 * 17 2 1 19 19 N 1.34778 * 120.00270 * 91.80753 * 17 2 1 20 20 C 1.47062 * 136.05741 * 4.88257 * 19 17 2 21 21 C 1.53238 * 88.08177 * 207.21071 * 20 19 17 22 22 C 1.50700 * 114.32353 * 220.47259 * 21 20 19 23 23 H 1.07995 * 120.00236 * 93.75530 * 22 21 20 24 24 C 1.37880 * 119.99772 * 273.75631 * 22 21 20 25 25 N 1.31510 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99829 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47413 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47022 * 120.00312 * 26 24 22 29 29 H 1.48500 * 109.47130 * 239.99699 * 26 24 22 30 30 C 1.47069 * 136.05367 * 185.26073 * 19 17 2 31 31 H 1.09002 * 109.46667 * 186.36588 * 1 2 3 32 32 H 1.08995 * 109.47680 * 306.37306 * 1 2 3 33 33 H 1.09002 * 109.47115 * 66.37583 * 1 2 3 34 34 H 1.09003 * 109.46905 * 175.00205 * 4 2 1 35 35 H 1.09000 * 109.46902 * 55.00499 * 4 2 1 36 36 H 1.08007 * 119.93900 * 359.97438 * 6 5 4 37 37 H 1.07995 * 120.05938 * 179.75420 * 7 6 5 38 38 H 1.07998 * 120.06072 * 179.74860 * 15 8 7 39 39 H 1.08000 * 119.94319 * 180.02562 * 16 15 8 40 40 H 1.08998 * 113.46537 * 321.93714 * 20 19 17 41 41 H 1.08990 * 113.46967 * 92.37864 * 20 19 17 42 42 H 1.08993 * 114.02306 * 87.71837 * 21 20 19 43 43 H 0.97004 * 119.99923 * 179.97438 * 25 24 22 44 44 H 1.09000 * 113.46629 * 267.61189 * 30 19 17 45 45 H 1.08999 * 113.47324 * 38.05991 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.4341 -0.2070 3.0981 7 6 0.0616 0.5065 4.2194 8 6 0.9085 1.4873 4.7309 9 6 0.5154 2.2543 5.9396 10 7 1.2216 3.2246 6.5369 11 7 0.5337 3.6310 7.5495 12 7 -0.5625 2.9586 7.6070 13 1 -1.2550 3.0707 8.2769 14 7 -0.5979 2.1168 6.6318 15 6 2.1228 1.7497 4.1008 16 6 2.4834 1.0336 2.9772 17 6 2.0324 -0.7103 -1.2304 18 8 2.2035 -1.9109 -1.2101 19 7 2.2918 -0.0116 -2.3533 20 6 2.2990 1.4074 -2.7396 21 6 1.9957 0.9650 -4.1751 22 6 2.7448 1.7338 -5.2329 23 1 3.6830 1.3566 -5.6119 24 6 2.2321 2.9188 -5.7168 25 7 1.0898 3.3784 -5.2548 26 14 3.1610 3.8721 -7.0275 27 1 4.4098 3.1475 -7.3751 28 1 2.3121 4.0036 -8.2388 29 1 3.4991 5.2227 -6.5110 30 6 2.6857 -0.3331 -3.7333 31 1 -0.3633 -1.0214 0.1139 32 1 -0.3634 0.6094 0.8274 33 1 -0.3633 0.4118 -0.9416 34 1 3.1263 -0.7993 1.2057 35 1 1.6054 -1.7197 1.2952 36 1 -0.2202 -0.9699 2.7027 37 1 -0.8828 0.3022 4.7016 38 1 2.7811 2.5118 4.4909 39 1 3.4248 1.2359 2.4881 40 1 1.4937 1.9849 -2.2857 41 1 3.2735 1.8826 -2.6285 42 1 0.9329 0.8554 -4.3904 43 1 0.7294 4.2122 -5.5950 44 1 3.7644 -0.3261 -3.8896 45 1 2.2086 -1.2324 -4.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589893850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = 135.773818 kcal Electronic energy + Delta-G solvation = -27938.453955 eV Core-core repulsion = 23959.721956 eV Total energy + Delta-G solvation = -3978.731999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.75737 -40.02510 -39.31246 -37.36020 -35.29219 -34.49293 -33.43732 -32.69998 -31.22419 -30.85192 -29.04316 -27.14481 -25.50157 -25.04340 -24.98436 -24.20634 -22.67846 -22.42820 -21.05073 -19.94051 -19.52690 -17.99025 -17.44621 -17.17040 -16.91522 -16.35811 -15.54812 -15.37752 -15.29152 -14.67993 -14.57875 -14.36192 -13.88801 -13.73275 -13.63009 -13.52569 -13.05089 -12.72724 -12.52658 -12.37632 -12.27596 -11.92075 -11.69621 -11.59319 -11.54590 -11.45429 -11.33241 -11.26565 -11.16756 -10.97383 -10.89901 -10.82919 -10.78265 -10.36791 -9.56579 -9.23117 -9.15344 -8.96323 -8.68275 -8.59630 -7.87484 -6.20320 -4.25743 0.44311 0.89202 1.20294 1.91576 2.08232 3.14888 3.21767 3.30942 3.34142 3.39160 3.49411 3.67115 3.89852 4.31899 4.60629 4.68025 4.79033 4.93592 4.98302 5.08081 5.10896 5.15699 5.16433 5.23532 5.35861 5.52045 5.63470 5.72386 5.85916 5.88351 5.91938 6.00788 6.03871 6.15114 6.17876 6.18303 6.21052 6.27370 6.28154 6.43172 6.48435 6.55993 6.65151 6.69987 6.82039 7.53344 7.77653 7.83086 8.16321 8.52165 8.75577 8.78837 9.41342 10.89425 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.002069 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.518467 B =13532.549540 C =14784.576854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.089 0.911 4 C -0.068 4.068 5 C -0.049 4.049 6 C -0.117 4.117 7 C -0.077 4.077 8 C -0.032 4.032 9 C 0.226 3.774 10 N -0.269 5.269 11 N -0.051 5.051 12 N -0.229 5.229 13 H 0.475 0.525 14 N -0.297 5.297 15 C -0.071 4.071 16 C -0.118 4.118 17 C 0.537 3.463 18 O -0.567 6.567 19 N -0.643 5.643 20 C 0.098 3.902 21 C 0.034 3.966 22 C -0.516 4.516 23 H 0.064 0.936 24 C 0.068 3.932 25 N -0.885 5.885 26 Si 0.895 3.105 27 H -0.271 1.271 28 H -0.283 1.283 29 H -0.283 1.283 30 C 0.099 3.901 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.263 0.737 44 H 0.072 0.928 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -1.982 23.199 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.105 4.105 5 C -0.050 4.050 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.035 4.035 9 C -0.054 4.054 10 N -0.142 5.142 11 N -0.046 5.046 12 N -0.075 5.075 13 H 0.329 0.671 14 N -0.148 5.148 15 C -0.091 4.091 16 C -0.136 4.136 17 C 0.326 3.674 18 O -0.447 6.447 19 N -0.376 5.376 20 C -0.024 4.024 21 C 0.015 3.985 22 C -0.555 4.555 23 H 0.082 0.918 24 C -0.136 4.136 25 N -0.522 5.522 26 Si 0.723 3.277 27 H -0.195 1.195 28 H -0.209 1.209 29 H -0.209 1.209 30 C -0.023 4.023 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.921 -2.098 23.867 24.278 hybrid contribution -0.104 0.578 -0.460 0.746 sum -4.025 -1.520 23.407 23.799 Atomic orbital electron populations 1.21762 0.92670 1.02490 1.02887 1.21117 0.97968 1.00572 0.92110 0.89228 1.20533 1.01900 0.98623 0.89467 1.20128 0.93923 0.95291 0.95654 1.21044 0.96508 1.00460 0.95484 1.21120 0.98881 0.94038 0.95664 1.17204 0.96649 0.97798 0.91894 1.23769 0.87798 0.95889 0.97943 1.76100 1.24036 1.11200 1.02895 1.78916 0.93978 1.16561 1.15127 1.47726 1.16803 1.22072 1.20899 0.67090 1.74932 1.23354 1.15257 1.01279 1.21150 0.94744 0.98636 0.94614 1.21063 1.00396 0.95959 0.96187 1.20031 0.77662 0.86856 0.82846 1.90625 1.55409 1.14990 1.83720 1.50037 1.65643 1.11753 1.10133 1.23557 1.00467 0.80473 0.97908 1.20301 0.97537 0.89594 0.91091 1.20944 1.06988 1.06121 1.21404 0.91775 1.25032 0.94733 0.97475 0.96326 1.69956 1.18504 1.21120 1.42653 0.86486 0.80017 0.79795 0.81439 1.19549 1.20889 1.20881 1.23344 0.99823 1.00659 0.78511 0.92047 0.91497 0.91751 0.90394 0.89479 0.85020 0.85085 0.84704 0.84988 0.92185 0.90754 0.91440 0.92681 0.90936 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.53 37.16 0.32 -1.51 16 2 C -0.10 -1.37 2.61 -91.77 -0.24 -1.61 16 3 H 0.09 1.25 7.84 -51.92 -0.41 0.84 16 4 C -0.07 -0.82 4.37 -27.89 -0.12 -0.94 16 5 C -0.05 -0.52 4.72 -104.56 -0.49 -1.01 16 6 C -0.12 -1.12 8.11 -39.63 -0.32 -1.44 16 7 C -0.08 -0.73 9.70 -39.26 -0.38 -1.11 16 8 C -0.03 -0.34 5.88 -104.90 -0.62 -0.95 16 9 C 0.23 2.44 7.94 -156.30 -1.24 1.20 16 10 N -0.27 -3.08 12.23 32.15 0.39 -2.68 16 11 N -0.05 -0.48 13.47 60.35 0.81 0.34 16 12 N -0.23 -1.52 7.90 60.35 0.48 -1.05 16 13 H 0.47 0.79 8.96 -340.37 -3.05 -2.26 16 14 N -0.30 -2.71 12.08 32.17 0.39 -2.32 16 15 C -0.07 -0.72 9.70 -39.26 -0.38 -1.10 16 16 C -0.12 -1.19 9.68 -39.63 -0.38 -1.57 16 17 C 0.54 10.01 7.11 -10.99 -0.08 9.94 16 18 O -0.57 -12.14 17.09 5.56 0.09 -12.04 16 19 N -0.64 -12.74 3.69 -185.39 -0.68 -13.43 16 20 C 0.10 2.01 7.75 -8.64 -0.07 1.94 16 21 C 0.03 0.78 3.77 -91.39 -0.34 0.44 16 22 C -0.52 -12.94 8.82 -34.44 -0.30 -13.24 16 23 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 24 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -23.75 13.26 55.43 0.74 -23.02 16 26 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 C 0.10 2.04 8.19 -8.50 -0.07 1.97 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.13 1.09 8.03 -52.48 -0.42 0.66 16 37 H 0.13 1.07 7.88 -52.49 -0.41 0.66 16 38 H 0.14 1.26 7.89 -52.49 -0.41 0.85 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 42 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 43 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.20 387.32 -10.60 -41.80 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.81 Total: -0.88 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -4.82 Total: -7.37 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 2.12 Total: -42.16 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.20 -10.60 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589893850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.574 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds