Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 O 1.45192 * 109.47333 * 120.00216 * 2 1 3 5 5 C 1.34231 * 117.00413 * 269.99962 * 4 2 1 6 6 O 1.20835 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00664 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46824 * 59.99718 * 7 5 4 9 9 C 1.52992 * 109.47309 * 180.02562 * 7 5 4 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 7 5 11 11 C 1.53006 * 109.47269 * 300.00224 * 10 9 7 12 12 H 1.08994 * 109.46604 * 299.99864 * 11 10 9 13 13 C 1.50694 * 109.47022 * 179.97438 * 11 10 9 14 14 O 1.20830 * 120.00220 * 359.97438 * 13 11 10 15 15 O 1.34226 * 119.99802 * 179.97438 * 13 11 10 16 16 C 1.52998 * 109.46801 * 59.99569 * 11 10 9 17 17 C 1.52990 * 109.47488 * 299.99993 * 16 11 10 18 18 C 1.50703 * 109.47231 * 240.00265 * 2 1 3 19 19 O 1.21273 * 120.00181 * 245.00042 * 18 2 1 20 20 N 1.34781 * 119.99657 * 64.99810 * 18 2 1 21 21 C 1.46495 * 120.00135 * 0.02562 * 20 18 2 22 22 C 1.46505 * 119.99781 * 180.02562 * 20 18 2 23 23 C 1.50696 * 109.47011 * 89.99787 * 22 20 18 24 24 H 1.07997 * 120.00012 * 0.02562 * 23 22 20 25 25 C 1.37877 * 119.99842 * 179.97438 * 23 22 20 26 26 N 1.31516 * 120.00069 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99806 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46845 * 90.00621 * 27 25 23 29 29 H 1.48503 * 109.47399 * 210.00111 * 27 25 23 30 30 H 1.48498 * 109.47295 * 330.00717 * 27 25 23 31 31 H 1.08999 * 109.47194 * 60.00211 * 1 2 3 32 32 H 1.09004 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47096 * 299.99464 * 1 2 3 34 34 H 1.09003 * 109.47294 * 299.99534 * 9 7 5 35 35 H 1.09002 * 109.47523 * 60.00004 * 9 7 5 36 36 H 1.09005 * 109.46951 * 60.00174 * 10 9 7 37 37 H 1.08999 * 109.47203 * 180.02562 * 10 9 7 38 38 H 0.96702 * 117.00465 * 180.02562 * 15 13 11 39 39 H 1.09005 * 109.47058 * 60.00271 * 16 11 10 40 40 H 1.08999 * 109.46568 * 179.97438 * 16 11 10 41 41 H 1.08997 * 109.47523 * 300.00114 * 17 16 11 42 42 H 1.09005 * 109.47711 * 179.97438 * 17 16 11 43 43 H 1.09003 * 109.46916 * 269.99755 * 21 20 18 44 44 H 1.08996 * 109.47229 * 30.00097 * 21 20 18 45 45 H 1.08999 * 109.47029 * 150.00017 * 21 20 18 46 46 H 1.09008 * 109.47050 * 329.99984 * 22 20 18 47 47 H 1.08991 * 109.47237 * 210.00127 * 22 20 18 48 48 H 0.97000 * 119.99838 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1854 5 6 2.2172 0.0639 2.2811 6 8 1.9973 1.2517 2.2506 7 6 2.7183 -0.5773 3.5494 8 1 3.6872 -1.0410 3.3639 9 6 2.8624 0.4887 4.6374 10 6 3.3706 -0.1625 5.9253 11 6 2.3746 -1.2290 6.3850 12 1 1.4056 -0.7654 6.5701 13 6 2.8754 -1.8707 7.6531 14 8 3.9220 -1.5122 8.1392 15 8 2.1590 -2.8406 8.2428 16 6 2.2305 -2.2950 5.2970 17 6 1.7222 -1.6438 4.0092 18 6 2.0323 -0.7104 -1.2305 19 8 2.6529 -1.7466 -1.1216 20 7 1.7918 -0.1940 -2.4520 21 6 1.0426 1.0580 -2.5835 22 6 2.2797 -0.8849 -3.6483 23 6 1.2327 -1.8559 -4.1297 24 1 0.2973 -1.9489 -3.5980 25 6 1.4686 -2.6249 -5.2495 26 7 2.6075 -2.5114 -5.8972 27 14 0.1704 -3.8281 -5.8466 28 1 -0.7310 -3.1461 -6.8097 29 1 0.8311 -4.9775 -6.5158 30 1 -0.6209 -4.3173 -4.6892 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 3.5718 1.2487 4.3097 35 1 1.8934 0.9520 4.8228 36 1 4.3397 -0.6260 5.7402 37 1 3.4729 0.5969 6.7005 38 1 2.5206 -3.2219 9.0546 39 1 3.1995 -2.7585 5.1118 40 1 1.5212 -3.0550 5.6247 41 1 0.7533 -1.1803 4.1942 42 1 1.6200 -2.4032 3.2338 43 1 -0.0216 0.8374 -2.6677 44 1 1.2165 1.6794 -1.7052 45 1 1.3754 1.5885 -3.4756 46 1 3.1944 -1.4267 -3.4074 47 1 2.4854 -0.1548 -4.4310 48 1 3.2814 -1.8863 -5.5874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593548506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = -232.346399 kcal Electronic energy + Delta-G solvation = -30274.915771 eV Core-core repulsion = 25908.326460 eV Total energy + Delta-G solvation = -4366.589311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22426 -40.69118 -39.25764 -38.13687 -36.56017 -36.39221 -35.08646 -33.18206 -32.34737 -31.42418 -31.18691 -27.45963 -26.27852 -25.92528 -24.26217 -23.30461 -22.83256 -22.11441 -20.75481 -20.08379 -19.07921 -18.43243 -17.96783 -17.20053 -16.97904 -16.83972 -16.43392 -16.06895 -15.84172 -15.25778 -14.87931 -14.71471 -14.55524 -14.07050 -13.80892 -13.74979 -13.53366 -13.19715 -13.06205 -12.80282 -12.68969 -12.54735 -12.31178 -12.19985 -12.00928 -11.95080 -11.85451 -11.72631 -11.57474 -11.46247 -11.31905 -11.00201 -10.98658 -10.87046 -10.74449 -10.62997 -10.58262 -10.38722 -10.13700 -9.19535 -9.03823 -8.42110 -7.74247 -6.42575 -4.14827 1.76886 2.07946 2.38710 2.59592 3.14443 3.40092 3.46104 3.61062 3.74529 4.06479 4.15339 4.28135 4.50305 4.52492 4.60440 4.67598 4.75870 4.83967 4.87402 4.94415 4.99051 5.00353 5.02970 5.31897 5.33006 5.35532 5.43027 5.49087 5.59480 5.62205 5.63022 5.65857 5.72518 5.77061 5.84648 5.91763 5.95590 6.07616 6.13623 6.37654 6.70738 7.03471 7.26064 7.45792 7.64892 7.97391 8.11171 8.37491 8.71584 8.84566 9.54668 10.95023 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.002143 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.631945 B =13061.124829 C =13795.553536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.104 0.896 4 O -0.323 6.323 5 C 0.465 3.535 6 O -0.511 6.511 7 C -0.082 4.082 8 H 0.114 0.886 9 C -0.102 4.102 10 C -0.104 4.104 11 C -0.083 4.083 12 H 0.112 0.888 13 C 0.483 3.517 14 O -0.515 6.515 15 O -0.516 6.516 16 C -0.109 4.109 17 C -0.111 4.111 18 C 0.509 3.491 19 O -0.519 6.519 20 N -0.593 5.593 21 C 0.079 3.921 22 C 0.237 3.763 23 C -0.607 4.607 24 H 0.052 0.948 25 C 0.019 3.981 26 N -0.909 5.909 27 Si 1.075 2.925 28 H -0.287 1.287 29 H -0.283 1.283 30 H -0.289 1.289 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.410 0.590 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.025 0.975 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 5.923 25.359 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.238 6.238 5 C 0.308 3.692 6 O -0.399 6.399 7 C -0.101 4.101 8 H 0.131 0.869 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.102 4.102 12 H 0.130 0.870 13 C 0.325 3.675 14 O -0.403 6.403 15 O -0.328 6.328 16 C -0.146 4.146 17 C -0.149 4.149 18 C 0.293 3.707 19 O -0.395 6.395 20 N -0.326 5.326 21 C -0.065 4.065 22 C 0.117 3.883 23 C -0.645 4.645 24 H 0.071 0.929 25 C -0.185 4.185 26 N -0.545 5.545 27 Si 0.903 3.097 28 H -0.214 1.214 29 H -0.208 1.208 30 H -0.215 1.215 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.268 0.732 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.043 0.957 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.636 4.856 23.944 24.701 hybrid contribution 0.447 1.150 1.640 2.052 sum -3.190 6.006 25.584 26.472 Atomic orbital electron populations 1.22261 0.92149 1.04316 1.03934 1.22595 0.95991 0.97253 0.82881 0.87874 1.86628 1.76243 1.41444 1.19480 1.23764 0.74090 0.85847 0.85524 1.90639 1.48237 1.16656 1.84404 1.21157 1.01906 0.97728 0.89312 0.86856 1.21456 1.03365 0.96671 0.92477 1.21479 0.98240 0.97139 0.97249 1.21181 1.02078 0.97160 0.89738 0.86975 1.23561 0.81745 0.76589 0.85571 1.90734 1.23696 1.61356 1.64488 1.84546 1.54018 1.50851 1.43336 1.21541 1.03235 0.96745 0.93106 1.21549 0.97901 0.97702 0.97714 1.19790 0.81327 0.85751 0.83805 1.90702 1.40174 1.22727 1.85855 1.47864 1.54376 1.23804 1.06556 1.21832 0.96777 0.85995 1.01873 1.19423 0.96253 0.92234 0.80357 1.22243 1.03205 1.24646 1.14445 0.92920 1.25831 1.00282 0.98628 0.93744 1.70779 1.06301 1.36380 1.41012 0.83459 0.74521 0.76089 0.75653 1.21412 1.20824 1.21476 0.89279 0.90753 0.91332 0.90049 0.90490 0.90438 0.90229 0.73155 0.90659 0.89649 0.90763 0.89119 0.92445 0.92327 0.91002 0.94714 0.95711 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.27 37.16 0.34 -1.95 16 2 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 3 H 0.10 1.55 6.14 -51.93 -0.32 1.23 16 4 O -0.32 -5.15 9.32 -45.89 -0.43 -5.58 16 5 C 0.46 6.11 7.23 36.00 0.26 6.37 16 6 O -0.51 -7.47 15.20 -18.76 -0.29 -7.76 16 7 C -0.08 -0.76 2.63 -91.77 -0.24 -1.00 16 8 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 9 C -0.10 -0.80 4.49 -26.73 -0.12 -0.92 16 10 C -0.10 -0.72 4.49 -26.73 -0.12 -0.84 16 11 C -0.08 -0.52 2.63 -91.77 -0.24 -0.76 16 12 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 13 C 0.48 3.68 7.62 36.00 0.27 3.95 16 14 O -0.51 -5.55 16.74 -18.75 -0.31 -5.87 16 15 O -0.52 -2.87 13.33 -39.25 -0.52 -3.39 16 16 C -0.11 -0.68 5.13 -26.74 -0.14 -0.82 16 17 C -0.11 -0.85 5.13 -26.73 -0.14 -0.99 16 18 C 0.51 10.82 7.10 -10.98 -0.08 10.74 16 19 O -0.52 -13.39 16.09 -14.05 -0.23 -13.61 16 20 N -0.59 -12.51 2.86 -182.96 -0.52 -13.03 16 21 C 0.08 1.22 8.96 59.84 0.54 1.76 16 22 C 0.24 6.09 4.52 -5.19 -0.02 6.07 16 23 C -0.61 -17.17 9.39 -34.44 -0.32 -17.50 16 24 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 25 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 26 N -0.91 -27.51 13.65 55.43 0.76 -26.75 16 27 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 31 H 0.09 1.12 5.12 -51.93 -0.27 0.85 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.41 0.71 9.10 45.56 0.41 1.13 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.80 8.11 -51.93 -0.42 0.37 16 43 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 44 H 0.06 0.73 6.08 -51.93 -0.32 0.41 16 45 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 46 H 0.03 1.00 7.29 -51.92 -0.38 0.62 16 47 H 0.03 0.63 7.76 -51.93 -0.40 0.23 16 48 H 0.27 8.04 7.22 -40.82 -0.29 7.74 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -37.61 393.55 -7.46 -45.07 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.60 Total: -1.01 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.16 Total: 5.68 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.23 Total: -39.78 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.78 Total: -36.21 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.61 -7.46 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593548506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.278 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds