Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47183 * 2 1 4 4 O 1.45196 * 109.47620 * 239.99889 * 2 1 3 5 5 C 1.34228 * 117.00147 * 89.99885 * 4 2 1 6 6 O 1.20829 * 119.99887 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00313 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47197 * 300.00232 * 7 5 4 9 9 C 1.53000 * 109.47103 * 59.99872 * 7 5 4 10 10 C 1.53004 * 109.47276 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46942 * 300.00307 * 10 9 7 12 12 H 1.08995 * 109.47320 * 299.99473 * 11 10 9 13 13 C 1.50706 * 109.46791 * 179.97438 * 11 10 9 14 14 O 1.20823 * 119.99733 * 240.00037 * 13 11 10 15 15 O 1.34228 * 119.99938 * 59.99547 * 13 11 10 16 16 C 1.52996 * 109.47378 * 60.00130 * 11 10 9 17 17 C 1.53001 * 109.46740 * 299.99571 * 16 11 10 18 18 C 1.50705 * 109.47045 * 119.99699 * 2 1 3 19 19 O 1.21275 * 119.99844 * 104.54725 * 18 2 1 20 20 N 1.34771 * 119.99919 * 284.54364 * 18 2 1 21 21 C 1.46494 * 120.00412 * 354.65208 * 20 18 2 22 22 C 1.46507 * 119.99803 * 174.65288 * 20 18 2 23 23 C 1.50702 * 109.47112 * 90.00275 * 22 20 18 24 24 H 1.08002 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.37869 * 120.00015 * 180.02562 * 23 22 20 26 26 N 1.31517 * 120.00271 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99962 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.47273 * 90.00707 * 27 25 23 29 29 H 1.48503 * 109.47093 * 210.00751 * 27 25 23 30 30 H 1.48500 * 109.47375 * 330.00331 * 27 25 23 31 31 H 1.08999 * 109.47615 * 294.89954 * 1 2 3 32 32 H 1.09006 * 109.47065 * 54.90021 * 1 2 3 33 33 H 1.08998 * 109.46758 * 174.89533 * 1 2 3 34 34 H 1.08999 * 109.47245 * 300.00190 * 9 7 5 35 35 H 1.09009 * 109.47054 * 60.00358 * 9 7 5 36 36 H 1.08999 * 109.47283 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.46359 * 60.00058 * 10 9 7 38 38 H 0.96694 * 117.00119 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.47237 * 179.97438 * 16 11 10 40 40 H 1.08995 * 109.47431 * 59.99411 * 16 11 10 41 41 H 1.09001 * 109.47394 * 299.99912 * 17 16 11 42 42 H 1.08999 * 109.47044 * 180.02562 * 17 16 11 43 43 H 1.09002 * 109.47155 * 275.11550 * 21 20 18 44 44 H 1.08998 * 109.47155 * 35.11252 * 21 20 18 45 45 H 1.09000 * 109.47675 * 155.11427 * 21 20 18 46 46 H 1.09002 * 109.47096 * 330.00146 * 22 20 18 47 47 H 1.08998 * 109.46840 * 210.00041 * 22 20 18 48 48 H 0.96998 * 119.99789 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2810 6 8 1.9982 1.2519 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 1 3.6873 -1.0409 -3.3638 9 6 1.7226 -1.6436 -4.0097 10 6 2.2311 -2.2942 -5.2978 11 6 2.3754 -1.2277 -6.3853 12 1 1.4064 -0.7642 -6.5705 13 6 2.8769 -1.8684 -7.6538 14 8 3.9231 -1.5087 -8.1396 15 8 2.1613 -2.8387 -8.2439 16 6 3.3713 -0.1613 -5.9250 17 6 2.8627 0.4893 -4.6369 18 6 2.0323 -0.7104 1.2305 19 8 2.4831 -1.8327 1.1412 20 7 1.9806 -0.0984 2.4302 21 6 1.5462 1.2976 2.5223 22 6 2.3587 -0.8293 3.6423 23 6 3.8333 -0.6508 3.8970 24 1 4.4293 -0.0531 3.2232 25 6 4.4218 -1.2514 4.9896 26 7 5.7085 -1.0953 5.2123 27 14 3.3912 -2.2859 6.1546 28 1 3.3885 -3.6972 5.6928 29 1 3.9667 -2.2135 7.5217 30 1 1.9991 -1.7692 6.1757 31 1 -0.3634 0.4327 0.9321 32 1 -0.3633 0.5909 -0.8408 33 1 -0.3633 -1.0236 -0.0914 34 1 1.6195 -2.4032 -3.2348 35 1 0.7536 -1.1800 -4.1953 36 1 1.5215 -3.0536 -5.6260 37 1 3.2002 -2.7577 -5.1126 38 1 2.5233 -3.2192 -9.0558 39 1 3.4744 0.5982 -6.6999 40 1 4.3402 -0.6248 -5.7398 41 1 1.8937 0.9528 -4.8221 42 1 3.5719 1.2493 -4.3092 43 1 2.3957 1.9554 2.3384 44 1 0.7723 1.4872 1.7785 45 1 1.1474 1.4892 3.5185 46 1 2.1383 -1.8888 3.5114 47 1 1.7941 -0.4428 4.4907 48 1 6.1226 -1.5182 5.9808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593548508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = -225.035837 kcal Electronic energy + Delta-G solvation = -30275.002407 eV Core-core repulsion = 25908.730106 eV Total energy + Delta-G solvation = -4366.272301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19431 -40.66398 -39.24068 -38.11265 -36.53969 -36.36739 -35.02043 -32.87383 -32.30322 -31.50357 -31.19325 -28.40981 -26.26805 -25.95825 -24.46501 -23.25073 -22.67363 -21.83865 -20.66777 -20.04174 -18.89104 -18.40808 -17.91277 -17.17394 -16.99797 -16.82259 -16.42377 -16.05447 -15.82252 -15.33859 -14.91995 -14.71883 -14.53227 -14.05695 -13.89433 -13.72001 -13.50367 -13.36000 -12.99253 -12.75420 -12.64280 -12.48485 -12.39955 -12.26017 -12.00379 -11.94444 -11.91776 -11.77469 -11.54479 -11.52789 -11.47448 -10.97541 -10.96504 -10.84290 -10.73445 -10.60000 -10.56355 -10.35511 -10.17550 -9.57429 -9.04014 -8.61039 -7.81405 -6.10271 -4.09541 1.79302 2.12009 2.39982 2.61617 3.15632 3.27175 3.32804 3.34623 3.72523 4.09263 4.18283 4.30347 4.37192 4.55751 4.63395 4.68102 4.76186 4.86755 4.90274 4.95493 5.01820 5.04614 5.05910 5.22285 5.33651 5.37773 5.40634 5.52446 5.55810 5.58703 5.65239 5.68526 5.75299 5.79017 5.87634 5.94335 5.96085 6.09812 6.12089 6.39527 6.61642 6.84418 7.21738 7.47964 7.56703 7.68484 8.08346 8.43249 8.79979 8.93552 9.48866 11.03158 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002176 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.541599 B =12867.393379 C =13350.196263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.324 6.324 5 C 0.465 3.535 6 O -0.509 6.509 7 C -0.082 4.082 8 H 0.114 0.886 9 C -0.110 4.110 10 C -0.109 4.109 11 C -0.082 4.082 12 H 0.112 0.888 13 C 0.483 3.517 14 O -0.514 6.514 15 O -0.516 6.516 16 C -0.104 4.104 17 C -0.102 4.102 18 C 0.510 3.490 19 O -0.515 6.515 20 N -0.593 5.593 21 C 0.076 3.924 22 C 0.218 3.782 23 C -0.530 4.530 24 H 0.074 0.926 25 C 0.072 3.928 26 N -0.896 5.896 27 Si 0.877 3.123 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.266 1.266 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.409 0.591 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.034 0.966 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 1.585 -23.402 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.239 6.239 5 C 0.308 3.692 6 O -0.397 6.397 7 C -0.102 4.102 8 H 0.132 0.868 9 C -0.148 4.148 10 C -0.146 4.146 11 C -0.101 4.101 12 H 0.130 0.870 13 C 0.325 3.675 14 O -0.402 6.402 15 O -0.328 6.328 16 C -0.142 4.142 17 C -0.140 4.140 18 C 0.294 3.706 19 O -0.390 6.390 20 N -0.326 5.326 21 C -0.068 4.068 22 C 0.098 3.902 23 C -0.568 4.568 24 H 0.092 0.908 25 C -0.131 4.131 26 N -0.534 5.534 27 Si 0.704 3.296 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.191 1.191 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.268 0.732 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.405 1.550 -23.018 26.194 hybrid contribution -0.035 -0.508 0.239 0.562 sum -12.440 1.042 -22.779 25.976 Atomic orbital electron populations 1.22172 0.92261 1.03956 1.03764 1.22616 0.95733 0.97674 0.82882 0.87760 1.86625 1.76330 1.41436 1.19475 1.23752 0.74086 0.85868 0.85488 1.90641 1.48141 1.16592 1.84374 1.21162 1.01953 0.97723 0.89317 0.86770 1.21544 0.97875 0.97690 0.97671 1.21546 1.03240 0.96733 0.93130 1.21181 1.02063 0.97166 0.89704 0.87006 1.23573 0.81759 0.76590 0.85591 1.90736 1.23678 1.61285 1.64488 1.84542 1.54075 1.50879 1.43311 1.21480 0.98268 0.97140 0.97266 1.21456 1.03364 0.96703 0.92456 1.19787 0.80063 0.86977 0.83753 1.90709 1.44110 1.19162 1.84988 1.47751 1.65167 1.12435 1.07286 1.21849 0.99308 0.82938 1.02698 1.19737 0.96898 0.92668 0.80884 1.21303 0.91901 1.32639 1.10957 0.90758 1.24867 0.94883 0.95859 0.97457 1.69899 1.10200 1.44276 1.29074 0.86841 0.80751 0.81567 0.80449 1.19863 1.21019 1.19076 0.89719 0.91101 0.90758 0.89165 0.90820 0.89705 0.90623 0.73180 0.90225 0.90395 0.90520 0.89967 0.92565 0.92171 0.90613 0.94548 0.94859 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.20 37.16 0.34 -1.63 16 2 C 0.07 1.10 2.14 -27.88 -0.06 1.04 16 3 H 0.10 1.60 6.34 -51.93 -0.33 1.27 16 4 O -0.32 -5.11 9.37 -45.75 -0.43 -5.53 16 5 C 0.47 6.19 7.23 36.00 0.26 6.45 16 6 O -0.51 -7.57 15.20 -18.75 -0.29 -7.85 16 7 C -0.08 -0.78 2.63 -91.77 -0.24 -1.02 16 8 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 9 C -0.11 -0.83 5.14 -26.73 -0.14 -0.97 16 10 C -0.11 -0.68 5.14 -26.73 -0.14 -0.82 16 11 C -0.08 -0.52 2.63 -91.77 -0.24 -0.76 16 12 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 13 C 0.48 3.73 7.63 36.01 0.27 4.00 16 14 O -0.51 -5.65 16.74 -18.75 -0.31 -5.97 16 15 O -0.52 -2.88 13.33 -39.25 -0.52 -3.41 16 16 C -0.10 -0.75 4.49 -26.73 -0.12 -0.87 16 17 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 18 C 0.51 10.51 6.95 -10.99 -0.08 10.43 16 19 O -0.51 -12.88 16.21 -13.58 -0.22 -13.10 16 20 N -0.59 -12.08 2.86 -182.95 -0.52 -12.60 16 21 C 0.08 1.14 9.84 59.84 0.59 1.73 16 22 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 23 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 24 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 25 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 26 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 27 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 28 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 31 H 0.08 0.90 6.24 -51.93 -0.32 0.58 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.41 0.73 9.10 45.56 0.41 1.15 16 39 H 0.08 0.58 8.10 -51.93 -0.42 0.15 16 40 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.70 4.86 -51.93 -0.25 0.45 16 45 H 0.08 1.04 7.83 -51.93 -0.41 0.63 16 46 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 47 H 0.03 0.75 6.92 -51.93 -0.36 0.39 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -38.11 393.22 -7.08 -45.20 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.69 Total: -0.73 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.13 Total: 8.29 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.25 Total: -39.51 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.77 Total: -35.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.11 -7.08 -45.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593548508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.838 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds