Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47183 * 2 1 4 4 O 1.45196 * 109.47620 * 239.99889 * 2 1 3 5 5 C 1.34228 * 117.00147 * 89.99885 * 4 2 1 6 6 O 1.20829 * 119.99887 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00313 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47197 * 300.00232 * 7 5 4 9 9 C 1.53000 * 109.47103 * 59.99872 * 7 5 4 10 10 C 1.53004 * 109.47276 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46942 * 300.00307 * 10 9 7 12 12 H 1.08995 * 109.47320 * 299.99473 * 11 10 9 13 13 C 1.50706 * 109.46791 * 179.97438 * 11 10 9 14 14 O 1.20823 * 119.99733 * 240.00037 * 13 11 10 15 15 O 1.34228 * 119.99938 * 59.99547 * 13 11 10 16 16 C 1.52996 * 109.47378 * 60.00130 * 11 10 9 17 17 C 1.53001 * 109.46740 * 299.99571 * 16 11 10 18 18 C 1.50705 * 109.47045 * 119.99699 * 2 1 3 19 19 O 1.21275 * 119.99844 * 104.54725 * 18 2 1 20 20 N 1.34771 * 119.99919 * 284.54364 * 18 2 1 21 21 C 1.46494 * 120.00412 * 354.65208 * 20 18 2 22 22 C 1.46507 * 119.99803 * 174.65288 * 20 18 2 23 23 C 1.50702 * 109.47112 * 90.00275 * 22 20 18 24 24 H 1.08002 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.37869 * 120.00015 * 180.02562 * 23 22 20 26 26 N 1.31517 * 120.00271 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99962 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.47273 * 90.00707 * 27 25 23 29 29 H 1.48503 * 109.47093 * 210.00751 * 27 25 23 30 30 H 1.48500 * 109.47375 * 330.00331 * 27 25 23 31 31 H 1.08999 * 109.47615 * 294.89954 * 1 2 3 32 32 H 1.09006 * 109.47065 * 54.90021 * 1 2 3 33 33 H 1.08998 * 109.46758 * 174.89533 * 1 2 3 34 34 H 1.08999 * 109.47245 * 300.00190 * 9 7 5 35 35 H 1.09009 * 109.47054 * 60.00358 * 9 7 5 36 36 H 1.08999 * 109.47283 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.46359 * 60.00058 * 10 9 7 38 38 H 0.96694 * 117.00119 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.47237 * 179.97438 * 16 11 10 40 40 H 1.08995 * 109.47431 * 59.99411 * 16 11 10 41 41 H 1.09001 * 109.47394 * 299.99912 * 17 16 11 42 42 H 1.08999 * 109.47044 * 180.02562 * 17 16 11 43 43 H 1.09002 * 109.47155 * 275.11550 * 21 20 18 44 44 H 1.08998 * 109.47155 * 35.11252 * 21 20 18 45 45 H 1.09000 * 109.47675 * 155.11427 * 21 20 18 46 46 H 1.09002 * 109.47096 * 330.00146 * 22 20 18 47 47 H 1.08998 * 109.46840 * 210.00041 * 22 20 18 48 48 H 0.96998 * 119.99789 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2810 6 8 1.9982 1.2519 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 1 3.6873 -1.0409 -3.3638 9 6 1.7226 -1.6436 -4.0097 10 6 2.2311 -2.2942 -5.2978 11 6 2.3754 -1.2277 -6.3853 12 1 1.4064 -0.7642 -6.5705 13 6 2.8769 -1.8684 -7.6538 14 8 3.9231 -1.5087 -8.1396 15 8 2.1613 -2.8387 -8.2439 16 6 3.3713 -0.1613 -5.9250 17 6 2.8627 0.4893 -4.6369 18 6 2.0323 -0.7104 1.2305 19 8 2.4831 -1.8327 1.1412 20 7 1.9806 -0.0984 2.4302 21 6 1.5462 1.2976 2.5223 22 6 2.3587 -0.8293 3.6423 23 6 3.8333 -0.6508 3.8970 24 1 4.4293 -0.0531 3.2232 25 6 4.4218 -1.2514 4.9896 26 7 5.7085 -1.0953 5.2123 27 14 3.3912 -2.2859 6.1546 28 1 3.3885 -3.6972 5.6928 29 1 3.9667 -2.2135 7.5217 30 1 1.9991 -1.7692 6.1757 31 1 -0.3634 0.4327 0.9321 32 1 -0.3633 0.5909 -0.8408 33 1 -0.3633 -1.0236 -0.0914 34 1 1.6195 -2.4032 -3.2348 35 1 0.7536 -1.1800 -4.1953 36 1 1.5215 -3.0536 -5.6260 37 1 3.2002 -2.7577 -5.1126 38 1 2.5233 -3.2192 -9.0558 39 1 3.4744 0.5982 -6.6999 40 1 4.3402 -0.6248 -5.7398 41 1 1.8937 0.9528 -4.8221 42 1 3.5719 1.2493 -4.3092 43 1 2.3957 1.9554 2.3384 44 1 0.7723 1.4872 1.7785 45 1 1.1474 1.4892 3.5185 46 1 2.1383 -1.8888 3.5114 47 1 1.7941 -0.4428 4.4907 48 1 6.1226 -1.5182 5.9808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593548508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = -250.846557 kcal Electronic energy + Delta-G solvation = -30276.121644 eV Core-core repulsion = 25908.730106 eV Total energy + Delta-G solvation = -4367.391538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14338 -41.46357 -40.66505 -38.91567 -37.56802 -37.06996 -36.72622 -34.83713 -33.42114 -32.51431 -31.82240 -30.24800 -27.63654 -26.79682 -25.80754 -24.30923 -23.62240 -22.92904 -21.53154 -20.73731 -20.39559 -19.17763 -19.02012 -18.94829 -18.20451 -17.74526 -17.44363 -17.27890 -16.87244 -16.60343 -16.49785 -15.80332 -15.39399 -15.16028 -15.03596 -14.68166 -14.59205 -14.45798 -14.34115 -13.90122 -13.77452 -13.59847 -13.47607 -13.42959 -13.28640 -13.10351 -12.82148 -12.69987 -12.59600 -12.55146 -12.41985 -12.40074 -12.14523 -12.04746 -11.91750 -11.76396 -11.61311 -11.54383 -11.22903 -11.21636 -10.83966 -10.66925 -9.52714 -8.34617 -6.40882 1.05107 1.21261 1.25225 1.33993 1.38364 1.46654 1.61670 2.13476 2.30864 2.32268 2.99497 3.36865 3.42530 3.50519 3.60868 3.76431 3.85750 3.92478 3.98227 4.11463 4.26397 4.27367 4.28843 4.45178 4.50649 4.53841 4.59383 4.63419 4.75043 4.76457 4.81693 4.86924 4.88443 4.93273 5.07582 5.09129 5.11736 5.15200 5.26091 5.32224 5.36782 5.42299 5.53069 5.64818 6.19938 6.47091 6.60435 6.63335 7.01333 7.13956 7.27128 8.82692 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.002176 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.541599 B =12867.393379 C =13350.196263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 H 0.110 0.890 4 O -0.343 6.343 5 C 0.464 3.536 6 O -0.525 6.525 7 C -0.082 4.082 8 H 0.112 0.888 9 C -0.104 4.104 10 C -0.102 4.102 11 C -0.080 4.080 12 H 0.135 0.865 13 C 0.489 3.511 14 O -0.553 6.553 15 O -0.511 6.511 16 C -0.099 4.099 17 C -0.094 4.094 18 C 0.500 3.500 19 O -0.572 6.572 20 N -0.599 5.599 21 C 0.068 3.932 22 C 0.224 3.776 23 C -0.540 4.540 24 H 0.022 0.978 25 C 0.007 3.993 26 N -0.947 5.947 27 Si 0.952 3.048 28 H -0.276 1.276 29 H -0.276 1.276 30 H -0.231 1.231 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.426 0.574 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.023 0.977 47 H 0.062 0.938 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 1.656 -23.919 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.127 0.873 4 O -0.258 6.258 5 C 0.308 3.692 6 O -0.414 6.414 7 C -0.101 4.101 8 H 0.130 0.870 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.098 4.098 12 H 0.152 0.848 13 C 0.333 3.667 14 O -0.444 6.444 15 O -0.324 6.324 16 C -0.136 4.136 17 C -0.131 4.131 18 C 0.287 3.713 19 O -0.451 6.451 20 N -0.331 5.331 21 C -0.073 4.073 22 C 0.103 3.897 23 C -0.578 4.578 24 H 0.041 0.959 25 C -0.190 4.190 26 N -0.587 5.587 27 Si 0.774 3.226 28 H -0.201 1.201 29 H -0.201 1.201 30 H -0.154 1.154 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.288 0.712 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.041 0.959 47 H 0.080 0.920 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.836 1.663 -23.565 28.440 hybrid contribution 1.111 -0.486 0.305 1.250 sum -14.725 1.177 -23.260 27.554 Atomic orbital electron populations 1.22184 0.88793 1.04641 1.05629 1.22569 0.98127 0.96581 0.80998 0.87261 1.86640 1.76816 1.42381 1.19999 1.24469 0.73367 0.85738 0.85597 1.90623 1.48984 1.17234 1.84572 1.21332 1.02280 0.98589 0.87855 0.86978 1.21521 0.97960 0.96804 0.97883 1.21495 1.03305 0.96829 0.92330 1.21198 1.02626 0.96852 0.89159 0.84759 1.23733 0.81051 0.76352 0.85604 1.90730 1.25361 1.62623 1.65675 1.84503 1.53622 1.50080 1.44198 1.21394 0.98080 0.97440 0.96710 1.21393 1.03512 0.96022 0.92221 1.20707 0.78878 0.86555 0.85128 1.90667 1.46611 1.21772 1.86020 1.47846 1.64628 1.14270 1.06356 1.22174 1.00208 0.79650 1.05312 1.19472 0.93988 0.92801 0.83477 1.21545 0.94270 1.31892 1.10097 0.95947 1.25939 0.96236 0.97236 0.99634 1.70066 1.12554 1.45864 1.30224 0.85652 0.80450 0.78905 0.77546 1.20127 1.20115 1.15396 0.87912 0.88983 0.90782 0.90112 0.89304 0.88195 0.91265 0.71236 0.90082 0.91519 0.89675 0.91153 0.93280 0.88095 0.88760 0.95905 0.92021 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.20 71.98 0.66 -2.63 16 2 C 0.08 2.32 2.14 29.85 0.06 2.38 16 3 H 0.11 3.22 6.34 -2.38 -0.02 3.20 16 4 O -0.34 -10.75 9.37 -45.18 -0.42 -11.17 16 5 C 0.46 12.07 7.23 71.24 0.51 12.58 16 6 O -0.53 -15.05 15.20 21.95 0.33 -14.71 16 7 C -0.08 -1.49 2.63 -11.54 -0.03 -1.52 16 8 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 9 C -0.10 -1.40 5.14 30.60 0.16 -1.24 16 10 C -0.10 -1.08 5.14 30.60 0.16 -0.93 16 11 C -0.08 -0.86 2.63 -11.54 -0.03 -0.89 16 12 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 13 C 0.49 6.81 7.63 71.24 0.54 7.35 16 14 O -0.55 -11.84 16.74 21.97 0.37 -11.48 16 15 O -0.51 -4.58 13.33 -51.40 -0.68 -5.27 16 16 C -0.10 -1.34 4.49 30.59 0.14 -1.20 16 17 C -0.09 -1.44 4.49 30.60 0.14 -1.30 16 18 C 0.50 20.76 6.95 87.66 0.61 21.37 16 19 O -0.57 -29.56 16.21 15.28 0.25 -29.32 16 20 N -0.60 -24.09 2.86 -851.13 -2.43 -26.52 16 21 C 0.07 1.91 9.84 127.77 1.26 3.17 16 22 C 0.22 10.72 4.23 85.63 0.36 11.09 16 23 C -0.54 -32.01 9.94 25.60 0.25 -31.75 16 24 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 25 C 0.01 0.43 5.47 84.65 0.46 0.90 16 26 N -0.95 -60.46 13.96 21.44 0.30 -60.16 16 27 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 28 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 29 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 30 H -0.23 -9.28 6.54 99.48 0.65 -8.63 16 31 H 0.10 1.78 6.24 -2.39 -0.01 1.77 16 32 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 35 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 36 H 0.10 0.82 8.11 -2.39 -0.02 0.80 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.43 0.70 9.10 -74.06 -0.67 0.02 16 39 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 2.00 4.86 -2.39 -0.01 1.98 16 45 H 0.09 2.31 7.83 -2.39 -0.02 2.29 16 46 H 0.02 1.16 6.93 -2.39 -0.02 1.14 16 47 H 0.06 2.61 6.92 -2.39 -0.02 2.59 16 48 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -87.38 393.22 5.10 -82.27 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.25 Total: 13.25 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.26 Total: 17.37 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.13 Total: -86.68 kcal Atomic # 8 Polarization: -71.79 SS G_CDS: -0.16 Total: -71.95 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -87.38 5.10 -82.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593548508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.573 kcal (2) G-P(sol) polarization free energy of solvation -87.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds